mRNA_L-elsbetiae_contig2076.6268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2076.6268.1
Unique NamemRNA_L-elsbetiae_contig2076.6268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2076.6268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2076contigL-elsbetiae_contig2076:14675..15492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.1273818-CDS-L-elsbetiae_contig2076:14674..149451622815853.1273818-CDS-L-elsbetiae_contig2076:14674..14945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 14675..14945 -
1691683146.9996748-CDS-L-elsbetiae_contig2076:14674..149451691683146.9996748-CDS-L-elsbetiae_contig2076:14674..14945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 14675..14945 -
1622815853.1427658-CDS-L-elsbetiae_contig2076:15433..154921622815853.1427658-CDS-L-elsbetiae_contig2076:15433..15492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 15434..15492 -
1691683147.0088804-CDS-L-elsbetiae_contig2076:15433..154921691683147.0088804-CDS-L-elsbetiae_contig2076:15433..15492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2076 15434..15492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2076.6268.1prot_L-elsbetiae_contig2076.6268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2076 14675..15492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2076.6268.1

>prot_L-elsbetiae_contig2076.6268.1 ID=prot_L-elsbetiae_contig2076.6268.1|Name=mRNA_L-elsbetiae_contig2076.6268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MSDVADRAKAIVAKSHDKDSLSKAPEALQAADSALREESPPTKAANPGYF
AGGGGGGSGAGSISSSEAEATAVPEPASSVNAFRLGEHVDRGPENGPEAP
PQSNILEELE
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mRNA from alignment at L-elsbetiae_contig2076:14675..15492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2076.6268.1 ID=mRNA_L-elsbetiae_contig2076.6268.1|Name=mRNA_L-elsbetiae_contig2076.6268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=818bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:14675..15492- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGACGTCGCCGACCGAGCGAAGGCGATAGTGGCGAAATCGCACGA
CAAAGACAGGTACGTGATATCGAAAAAACGAGTGCATGGGTTAGCTATTT
CAAGCGGCCGAGTGCGGGGTATTTAGTAAGGCCGTGATCTGGTTTCATTC
GTGAGTTCGTTATCTCTCGCGATTCTCTCCTTCTACTGCTGAAAACCGGG
GTTTCGATAGAACAGCCCCCCCGTCCAGACGCTCACGCGATATCCAGAGC
TCTGTTCGCCCAAAACAGACAGGCTCTGAGGAGGCGGGCTGGCGTGTCGT
GTTTCAGATGAGCTCAGCCGGTCGTGCTGTATTAGAAAATGTTTTTTTCA
AGCCATAAACAGGAACAGACTAGACCCAAATGCATCAGCATGCCTAAAAG
TGATGCAGCGGAGCTCTCCCACGCGAAAACGGCTGCAATATCAACAAACT
AAATCATCAATGAGAGCAGTGGCAGGGGCAACCGCGATGAAAAAACTGCA
GCAACACCTTCTCCTCGGCCTCTTGAAAATCCGCGAACGTATCACAGTCT
CTCAAAAGCCCCGGAGGCGCTTCAAGCGGCAGATTCTGCGCTGCGGGAAG
AATCACCCCCTACGAAGGCAGCAAACCCTGGATATTTTGCCGGCGGCGGC
GGCGGTGGCTCTGGGGCGGGTTCTATTTCCTCTTCGGAGGCCGAGGCGAC
CGCTGTCCCTGAACCGGCGTCGTCCGTGAATGCTTTCCGGTTGGGGGAGC
ACGTGGACAGGGGGCCCGAAAACGGGCCTGAGGCGCCTCCTCAATCGAAC
ATATTGGAGGAGCTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2076:14675..15492-

>mRNA_L-elsbetiae_contig2076.6268.1 ID=mRNA_L-elsbetiae_contig2076.6268.1|Name=mRNA_L-elsbetiae_contig2076.6268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig2076:14675..15492- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGACGTCGCCGACCGAGCGAAGGCGATAGTGGCGAAATCGCACGA
CAAAGACAGATGAGTGACGTCGCCGACCGAGCGAAGGCGATAGTGGCGAA
ATCGCACGACAAAGACAGTCTCTCAAAAGCCCCGGAGGCGCTTCAAGCGG
CAGATTCTGCGCTGCGGGAAGAATCACCCCCTACGAAGGCAGCAAACCCT
GGATATTTTGCCGGCGGCGGCGGCGGTGGCTCTGGGGCGGGTTCTATTTC
CTCTTCGGAGGCCGAGGCGACCGCTGTCCCTGAACCGGCGTCGTCCGTGA
ATGCTTTCCGGTTGGGGGAGCACGTGGACAGGGGGCCCGAAAACGGGCCT
GAGGCGCCTCCTCAATCGAACATATTGGAGGAGCTCGAGTCTCTCAAAAG
CCCCGGAGGCGCTTCAAGCGGCAGATTCTGCGCTGCGGGAAGAATCACCC
CCTACGAAGGCAGCAAACCCTGGATATTTTGCCGGCGGCGGCGGCGGTGG
CTCTGGGGCGGGTTCTATTTCCTCTTCGGAGGCCGAGGCGACCGCTGTCC
CTGAACCGGCGTCGTCCGTGAATGCTTTCCGGTTGGGGGAGCACGTGGAC
AGGGGGCCCGAAAACGGGCCTGAGGCGCCTCCTCAATCGAACATATTGGA
GGAGCTCGAG
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