mRNA_L-elsbetiae_contig20752.6263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20752.6263.1
Unique NamemRNA_L-elsbetiae_contig20752.6263.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20752.6263.1 vs. uniprot
Match: D7G2T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.110e-23
Identity = 88/226 (38.94%), Postives = 110/226 (48.67%), Query Frame = 1 
Query:    1 QASRLERLVADAAALVKHTGRFYDRYSETHRSNPSGE---GVEISRIVPGNIPGKGGG----GFCRDCGAAA-AGTLNTSRSPDPRVSARAGFSRGGVGVGVXXCXXXXXXXXXXXXXXXXXXXXTTFAGSQQPWGGRGQEEASGSFLGRTVDHGAAAASVXXXXXXXXXXXXXXXRYW---GGALRELDHHCYSLLESNARLCLKLQGLGLEYSGLARVLLAAGG 645
            QAS+LER+VA+A+ L++ TG FYDRYSETH+ N  GE     E S  +PG+  G  G     G  ++ GAA  AG  +         SA A   R                                  G  QPW GR   E S +FL RT++H                      R+W   G ALRELD  CYSLLESNA+LCL++QGLGLEY+GL R L+A+GG
Sbjct:  495 QASKLERIVAEASDLIRRTGHFYDRYSETHK-NAGGEKNGDDEASEKLPGSNSGLPGNDATAGRYQNRGAATGAGQSDRYEGRHRAASAEAAIERS---------FGANGRSPGDPPPGVFSPQQPPAGGGHQPWRGR---EDSWNFLDRTLEH----------------------RHWVETGPALRELDRACYSLLESNAQLCLRIQGLGLEYAGLTRELMASGG 685
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BLAST of mRNA_L-elsbetiae_contig20752.6263.1 vs. uniprot
Match: A0A6H5K601_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K601_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.910e-23
Identity = 84/221 (38.01%), Postives = 108/221 (48.87%), Query Frame = 1 
Query:    1 QASRLERLVADAAALVKHTGRFYDRYSETHRS---NPSGEGVEISRIVPGNIPGKGG---GGFCRDCGAA-AAGTLNTSRSPDPRVSARAGFSRGGVGVGVXXCXXXXXXXXXXXXXXXXXXXXTTFAGSQQPWGGRGQEEASGSFLGRTVDHGAAAASVXXXXXXXXXXXXXXXRYWGGALRELDHHCYSLLESNARLCLKLQGLGLEYSGLARVLLAAG 642
            QAS+LER+VA+A+ L++ TG FYDRYSETH++   + +G+     +I  GN    G     G  ++ G A AAG  +         SA A   R                                 AG  QPW GR   E SG+ L RT++H     +                   G ALRELD  CYSLLESNA+LCL+LQGLGLEY+GL+R LLA+G
Sbjct:    7 QASKLERIVAEASDLIRQTGHFYDRYSETHKNAGGDKNGDDKASEKIPGGNSSLLGNDATAGRHQNRGVATAAGQSDRCEGRHRAASAGAAMERS----------FGANGSSPGNPPPGVFSPQQLSAGGHQPWRGR---EDSGNCLDRTLEHRHGVGA-------------------GPALRELDRACYSLLESNAQLCLRLQGLGLEYAGLSRQLLASG 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20752.6263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2T2_ECTSI1.110e-2338.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K601_9PHAE2.910e-2338.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20752contigL-elsbetiae_contig20752:1572..2318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.8996027-CDS-L-elsbetiae_contig20752:1571..18341622815852.8996027-CDS-L-elsbetiae_contig20752:1571..1834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20752 1572..1834 +
1691683146.8909633-CDS-L-elsbetiae_contig20752:1571..18341691683146.8909633-CDS-L-elsbetiae_contig20752:1571..1834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20752 1572..1834 +
1622815852.9123633-CDS-L-elsbetiae_contig20752:1936..23181622815852.9123633-CDS-L-elsbetiae_contig20752:1936..2318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20752 1937..2318 +
1691683146.9006083-CDS-L-elsbetiae_contig20752:1936..23181691683146.9006083-CDS-L-elsbetiae_contig20752:1936..2318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20752 1937..2318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20752.6263.1prot_L-elsbetiae_contig20752.6263.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20752 1572..2318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20752.6263.1

>prot_L-elsbetiae_contig20752.6263.1 ID=prot_L-elsbetiae_contig20752.6263.1|Name=mRNA_L-elsbetiae_contig20752.6263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
QASRLERLVADAAALVKHTGRFYDRYSETHRSNPSGEGVEISRIVPGNIP
GKGGGGFCRDCGAAAAGTLNTSRSPDPRVSARAGFSRGGVGVGVGGCVAG
GGGGGGNFAPTATTATATTFAGSQQPWGGRGQEEASGSFLGRTVDHGAAA
ASVAAGVAAGAGGGAHGGRYWGGALRELDHHCYSLLESNARLCLKLQGLG
LEYSGLARVLLAAGG
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mRNA from alignment at L-elsbetiae_contig20752:1572..2318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20752.6263.1 ID=mRNA_L-elsbetiae_contig20752.6263.1|Name=mRNA_L-elsbetiae_contig20752.6263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig20752:1572..2318+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTCAAGGCTGGAACGGCTGGTGGCCGATGCAGCTGCCCTCGTGAA
GCACACCGGCCGCTTCTACGACCGGTACTCGGAGACGCACAGATCGAACC
CTTCCGGCGAGGGAGTGGAAATTTCCCGAATCGTTCCTGGGAACATTCCT
GGAAAAGGCGGGGGTGGTTTCTGCCGGGACTGCGGGGCGGCGGCGGCCGG
GACTCTAAACACCTCGAGGAGCCCCGACCCCAGGGTTTCCGCCAGGGCGG
GGTTTTCGCGAGGGTATTATCAGCAGCAGTCGCTCGGCGGTGGCAGCAGT
CCGAACTACTACTGTTACGCCGCCGGCGGCGGCGCCGGCGCCGGCGCCAG
CGGTTGCAACGGCAGCGGTGTTGGTGTTGGTGTTGGCGGGTGTGTCGCGG
GCGGCGGCGGCGGCGGCGGCAACTTCGCCCCGACCGCTACTACCGCTACG
GCCACCACTTTTGCGGGGAGCCAGCAGCCCTGGGGGGGGCGCGGGCAGGA
GGAGGCTTCCGGCAGCTTTCTCGGCCGGACCGTGGATCACGGGGCGGCGG
CGGCCTCGGTGGCGGCGGGAGTAGCGGCGGGGGCGGGGGGGGGGGCGCAC
GGTGGCCGCTACTGGGGGGGTGCCTTGAGAGAGCTGGACCACCATTGCTA
CTCGCTGCTGGAGTCCAACGCGCGGCTCTGCCTGAAGCTGCAAGGGCTCG
GCCTGGAGTACTCGGGGCTCGCGAGGGTGCTGCTGGCCGCGGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20752:1572..2318+

>mRNA_L-elsbetiae_contig20752.6263.1 ID=mRNA_L-elsbetiae_contig20752.6263.1|Name=mRNA_L-elsbetiae_contig20752.6263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig20752:1572..2318+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTCAAGGCTGGAACGGCTGGTGGCCGATGCAGCTGCCCTCGTGAA
GCACACCGGCCGCTTCTACGACCGGTACTCGGAGACGCACAGATCGAACC
CTTCCGGCGAGGGAGTGGAAATTTCCCGAATCGTTCCTGGGAACATTCCT
GGAAAAGGCGGGGGTGGTTTCTGCCGGGACTGCGGGGCGGCGGCGGCCGG
GACTCTAAACACCTCGAGGAGCCCCGACCCCAGGGTTTCCGCCAGGGCGG
GGTTTTCGCGAGGCAGGCGTCAAGGCTGGAACGGCTGGTGGCCGATGCAG
CTGCCCTCGTGAAGCACACCGGCCGCTTCTACGACCGGTACTCGGAGACG
CACAGATCGAACCCTTCCGGCGAGGGAGTGGAAATTTCCCGAATCGTTCC
TGGGAACATTCCTGGAAAAGGCGGGGGTGGTTTCTGCCGGGACTGCGGGG
CGGCGGCGGCCGGGACTCTAAACACCTCGAGGAGCCCCGACCCCAGGGTT
TCCGCCAGGGCGGGGTTTTCGCGAGGCGGTGTTGGTGTTGGTGTTGGCGG
GTGTGTCGCGGGCGGCGGCGGCGGCGGCGGCAACTTCGCCCCGACCGCTA
CTACCGCTACGGCCACCACTTTTGCGGGGAGCCAGCAGCCCTGGGGGGGG
CGCGGGCAGGAGGAGGCTTCCGGCAGCTTTCTCGGCCGGACCGTGGATCA
CGGGGCGGCGGCGGCCTCGGTGGCGGCGGGAGTAGCGGCGGGGGCGGGGG
GGGGGGCGCACGGTGGCCGCTACTGGGGGGGTGCCTTGAGAGAGCTGGAC
CACCATTGCTACTCGCTGCTGGAGTCCAACGCGCGGCTCTGCCTGAAGCT
GCAAGGGCTCGGCCTGGAGTACTCGGGGCTCGCGAGGGTGCTGCTGGCCG
CGGGAGGGCGGTGTTGGTGTTGGTGTTGGCGGGTGTGTCGCGGGCGGCGG
CGGCGGCGGCGGCAACTTCGCCCCGACCGCTACTACCGCTACGGCCACCA
CTTTTGCGGGGAGCCAGCAGCCCTGGGGGGGGCGCGGGCAGGAGGAGGCT
TCCGGCAGCTTTCTCGGCCGGACCGTGGATCACGGGGCGGCGGCGGCCTC
GGTGGCGGCGGGAGTAGCGGCGGGGGCGGGGGGGGGGGCGCACGGTGGCC
GCTACTGGGGGGGTGCCTTGAGAGAGCTGGACCACCATTGCTACTCGCTG
CTGGAGTCCAACGCGCGGCTCTGCCTGAAGCTGCAAGGGCTCGGCCTGGA
GTACTCGGGGCTCGCGAGGGTGCTGCTGGCCGCGGGAGGG
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