mRNA_L-elsbetiae_contig2075.6261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2075.6261.1
Unique NamemRNA_L-elsbetiae_contig2075.6261.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.360e-43
Identity = 102/193 (52.85%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:  271 GYGGWMLRDLKETFREG-HLASRRTAAFFLRVVSTKQ---GRVDVEEEKVLDRANPP--ARPRGSGSSSRGGVIMGG----------------------ALGLKEFMHRTRVLDLYRGILKRARSIGDQDVAAETRRQFKASRDETDPLKIQMLVADATNHLEAMQGSTRGAGSSGDGG--SWLDIHDPEDKR 759
            G GG MLRD  E FREG H  + R      R  ST Q        E    +     P   RPR   SSS                              ALGLKEFMHR RVL+LYRGILKRAR++ D+DVA E RRQFK+   ETDPLK+QM+VADATNHLEAMQGSTRGAGS G GG  SWLDIHDPEDKR
Sbjct:   11 GCGGRMLRDSTEAFREGSHTKNARPRVAPFRSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKR 203
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BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.140e-36
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:  505 MHRTRVLDLYRGILKRARSIGDQDVAAETRRQFKASRDETDPLKIQMLVADATNHLEAMQGSTRGAGSSGDGG--SWLDIHDPEDKR 759
            MHR RVL+LYRGILKRAR++ D+DVA E R+QFK+   ETDPLK+QM+VADATNHLEAMQGSTRGAGS G GG  SWLDIHDPEDKR
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKR 87
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BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.820e-13
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:  493 LKEFMHRTRVLDLYRGILKRARSIGD----QDVAAETRRQFKASRDETDPLKIQMLVADATNHLEAMQGSTRGAGSSGD----GGSWLDIHDPEDKR 759
            LK+F+ + +VL  YR +LK AR++ D    Q+VAA+ R +++A   ETD LK++ML+A+A  H++ +QG+   A +S D     GSWLD+ DPED+R
Sbjct:   31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTV--ARTSPDMPPPPGSWLDVDDPEDRR 125
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BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Match: A0A8C3AAP9_CYCLU (LYR motif-containing protein 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AAP9_CYCLU)

HSP 1 Score: 55.5 bits (132), Expect = 2.480e-6
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  484 ALGLKEFMHRTRVLDLYRGILKRARSIGDQD----VAAETRRQFKASRDETDPLKIQMLVADATNHLEAMQGSTRGAGS 708
            AL LK+F+ R RVL +YR +++  R + D+     ++   R +FK ++  TD   I+M++  A NHLE +QGS   AGS
Sbjct:   41 ALSLKQFLQRQRVLGIYRNMIRTIRKVPDEADRKYLSDWARDEFKRNKSATDQDAIRMMITQANNHLEELQGSLALAGS 119
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BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Match: UPI001C03B48E (LYR motif-containing protein 2 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03B48E)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  484 ALGLKEFMHRTRVLDLYRGILKRARSIGDQD----VAAETRRQFKASRDETDPLKIQMLVADATNHLEAMQ 684
            AL LK+F+HR RVL +YR +L+  R + D+     +    R +F+ ++D T+   I+M++  A NHLE +Q
Sbjct:   10 ALSLKQFLHRQRVLGIYRTMLRTIRQVPDEADRKYLKDWAREEFRRNKDATNQDAIRMMITQARNHLETLQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2075.6261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE5.360e-4352.85Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI2.140e-3678.16Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A835YQF9_9STRA6.820e-1344.33Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A8C3AAP9_CYCLU2.480e-639.24LYR motif-containing protein 2 n=2 Tax=Cyclopterus... [more]
UPI001C03B48E2.210e-538.03LYR motif-containing protein 2 n=1 Tax=Melanotaeni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2075contigL-elsbetiae_contig2075:13753..15796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Exons3
Model size761
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2075.6261.1prot_L-elsbetiae_contig2075.6261.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2075 14980..15796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.8282084-UTR-L-elsbetiae_contig2075:13752..140231622815852.8282084-UTR-L-elsbetiae_contig2075:13752..14023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 13753..14023 +
1691683146.8514223-UTR-L-elsbetiae_contig2075:13752..140231691683146.8514223-UTR-L-elsbetiae_contig2075:13752..14023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 13753..14023 +
1622815852.8426254-UTR-L-elsbetiae_contig2075:14965..149791622815852.8426254-UTR-L-elsbetiae_contig2075:14965..14979Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 14966..14979 +
1691683146.8610873-UTR-L-elsbetiae_contig2075:14965..149791691683146.8610873-UTR-L-elsbetiae_contig2075:14965..14979Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 14966..14979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.8543472-CDS-L-elsbetiae_contig2075:14979..152431622815852.8543472-CDS-L-elsbetiae_contig2075:14979..15243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 14980..15243 +
1691683146.870647-CDS-L-elsbetiae_contig2075:14979..152431691683146.870647-CDS-L-elsbetiae_contig2075:14979..15243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 14980..15243 +
1622815852.8656447-CDS-L-elsbetiae_contig2075:15586..157961622815852.8656447-CDS-L-elsbetiae_contig2075:15586..15796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 15587..15796 +
1691683146.8815618-CDS-L-elsbetiae_contig2075:15586..157961691683146.8815618-CDS-L-elsbetiae_contig2075:15586..15796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 15587..15796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2075.6261.1

>prot_L-elsbetiae_contig2075.6261.1 ID=prot_L-elsbetiae_contig2075.6261.1|Name=mRNA_L-elsbetiae_contig2075.6261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MLRDLKETFREGHLASRRTAAFFLRVVSTKQGRVDVEEEKVLDRANPPAR
PRGSGSSSRGGVIMGGALGLKEFMHRTRVLDLYRGILKRARSIGDQDVAA
ETRRQFKASRDETDPLKIQMLVADATNHLEAMQGSTRGAGSSGDGGSWLD
IHDPEDKR
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mRNA from alignment at L-elsbetiae_contig2075:13753..15796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2075.6261.1 ID=mRNA_L-elsbetiae_contig2075.6261.1|Name=mRNA_L-elsbetiae_contig2075.6261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2044bp|location=Sequence derived from alignment at L-elsbetiae_contig2075:13753..15796+ (Laminarionema elsbetiae ELsaHSoW15)
CGACCACGTTGCAAGCAGACAAAGCGATCGATCCCCCATCGCAGTGTCAT
GTTCTTCGCTTCTGCGCTCCACCATCACAGCATTACATCCGTCTGCGGCG
GAATTCATCTCGTACGCGGAGGTATTTTCTCTTTTTGCACTCTCAGATTT
CCCTTCCCCTCCGCTTTTCCCGGCTAATCTCAGTGGTAGGCAAACATGCC
ATTGTTGTGAGCTCGAAGGGCATGCGCTCCGCACATCCCGTTCCGCTAGT
TTTACGGGACACATCTGGCAGGTGTGCAGGTTTGCTTATTGTTAGCATTG
ACAGCGCTGATCGGCTGACCGATGAAAAGATGAATAGGCACGCAGCGAGC
TTTCTGAAAGCCGGCGGCCCAGGGCTCCTGGGGCCATGGGAAGGGCTGGC
GGAGTGATCAGGATTGAAGCAACCCACCTCATTTTGATGTCCTTTCTCTG
GTTTGTCGTGAGCCCTTGACCACGTCCACTCTTGCCATAAGTATTTTGTG
CATGTCATGCGGCGATTTGATTGCTTCTTCCATAATCTGTGGTGCTTATA
AGTTAAGCACACGCCGGTTGAAAATTACCGTAATCATGCGAGTCATCACA
CCTCCCCCGGACCGATTTTCAAAGGTCGATTACTTCGTGATGAAGAGGGT
GCAAATATCAAACGACACCTTTTCAGGAAGCTCTCGATGCGGTCGTCCCA
ATGCCACCCTCTTCGGTGCCGGCACCCTCTTTCATCAAGGCGTAATCGAG
CGTCAAAAACCGGTCCGGGGGAGGTGCGGTGACCCGCATGATCACGGTAC
TCGTGGCGCGCGAATTTGTGGCGCGATTGCTTTATTGCAAGTCTCAGCTG
TCGTAACTGCAACTTTTCCAGCACCAATGGCAGTGGACGTTTCAGTCATG
GGAGCACAGGCACGTAAAACACCAGTTCTTGTGCTGCGTTCCTATCTGAC
CTTCTTCGCTATCTCTGCCAATGCGTTGATGCAAAATAACCAAACGACCG
GTGACACCTCTTACACCCACCTGATCTTCCTCGCGACCTCAACCAATGTG
TGACGATGCAAAGGAATCACCGATCGATGACACGTCATACACCCCCCCCC
CCCCCCCCCCCCCCGCCCCCCCCCACCGGTCTCCCGGGGTCGGGGGGCGG
GGGGTGGGGGGCCTAAAAAAAGCAATCCCGGAAGGGGACCGGCGCCCCTC
AACGGTTCTCCAGGGTACGGGGGCTGGATGCTGCGAGACTTAAAAGAGAC
ATTCCGAGAAGGGCACCTCGCGAGCCGTAGAACAGCAGCGTTTTTTTTGC
GCGTAGTCTCGACGAAACAGGGCAGGGTCGATGTGGAGGAAGAAAAAGTG
TTGGATAGAGCTAACCCTCCTGCACGCCCACGGGGCAGCGGCAGCAGTTC
AAGAGGCGGCGTAATAATGGGTGGGGCCCTCGGACTGAAGGAGTTTATGC
ACCGCACCCGAGTACTGGACCTCTACCGTGGCATATTGAAGGTGGGAGGA
AGCATGACAAACCGCTCTTGAACTTACTGCGCGTAACCGCGCGCCCCTAT
GTACTGGCTTTCACAAGATGTCCCGGTGTCTTGATAGGTGTGAATTGGCG
TGGAAGCGTGCACTCGATACTGCCGTGCACGCGTATTTTGCTATTTTGCT
GGTCGTGATCGTATCGTCTCTGTGGACTCTCACCACAAAAGACTCACCCT
TCTCATTTGCTGCGTCGCGCTTGCCTGCTGCACGCGCGTGAATACCACTT
GCGCCAATGCGTTTGGTTTTTCATCGTGCGTGCTCGACACGGCGCGGGCG
AACAAACTACCACGACGACCACGCCAAACGACAGCGGGCCCGATCCATAG
GAGACCAGGACGTCGCCGCGGAGACCAGAAGACAATTTAAGGCTTCCCGC
GACGAGACAGACCCTCTAAAGATCCAGATGCTCGTTGCCGATGCCACGAA
CCACCTCGAGGCGATGCAGGGTTCCACGCGGGGAGCGGGATCTTCCGGCG
ACGGGGGGTCGTGGCTAGATATTCACGACCCGGAGGACAAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2075:13753..15796+

>mRNA_L-elsbetiae_contig2075.6261.1 ID=mRNA_L-elsbetiae_contig2075.6261.1|Name=mRNA_L-elsbetiae_contig2075.6261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig2075:13753..15796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCGAGACTTAAAAGAGACATTCCGAGAAGGGCACCTCGCGAGCCG
TAGAACAGCAGCGTTTTTTTTGCGCGTAGTCTCGACGAAACAGGGCAGGG
TCGATGTGGAGGAAGAAAAAGTGTTGGATAGAGCTAACCCTCCTGCACGC
CCACGGGGCAGCGGCAGCAGTTCAAGAGGCGGCGTAATAATGGGTGGGGC
CCTCGGACTGAAGGAGTTTATGCACCGCACCCGAGTACTGGACCTCTACC
GTGGCATATTGAAGATGCTGCGAGACTTAAAAGAGACATTCCGAGAAGGG
CACCTCGCGAGCCGTAGAACAGCAGCGTTTTTTTTGCGCGTAGTCTCGAC
GAAACAGGGCAGGGTCGATGTGGAGGAAGAAAAAGTGTTGGATAGAGCTA
ACCCTCCTGCACGCCCACGGGGCAGCGGCAGCAGTTCAAGAGGCGGCGTA
ATAATGGGTGGGGCCCTCGGACTGAAGGAGTTTATGCACCGCACCCGAGT
ACTGGACCTCTACCGTGGCATATTGAAGCGGGCCCGATCCATAGGAGACC
AGGACGTCGCCGCGGAGACCAGAAGACAATTTAAGGCTTCCCGCGACGAG
ACAGACCCTCTAAAGATCCAGATGCTCGTTGCCGATGCCACGAACCACCT
CGAGGCGATGCAGGGTTCCACGCGGGGAGCGGGATCTTCCGGCGACGGGG
GGTCGTGGCTAGATATTCACGACCCGGAGGACAAGAGGCGGGCCCGATCC
ATAGGAGACCAGGACGTCGCCGCGGAGACCAGAAGACAATTTAAGGCTTC
CCGCGACGAGACAGACCCTCTAAAGATCCAGATGCTCGTTGCCGATGCCA
CGAACCACCTCGAGGCGATGCAGGGTTCCACGCGGGGAGCGGGATCTTCC
GGCGACGGGGGGTCGTGGCTAGATATTCACGACCCGGAGGACAAGAGG
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