mRNA_L-elsbetiae_contig20742.6257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20742.6257.1
Unique NamemRNA_L-elsbetiae_contig20742.6257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20742.6257.1 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 7.110e-12
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 LCLLLIMRDEEENLKKHLPVWRDVADCFVVGVDDRTTDST 120
            LCLL+I+RDEE +L ++LP+W DVADCFV+GVDDRT+D+T
Sbjct:   84 LCLLMIVRDEEFSLSENLPLWLDVADCFVIGVDDRTSDAT 123
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BLAST of mRNA_L-elsbetiae_contig20742.6257.1 vs. uniprot
Match: A0A7S3JQU4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQU4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LCLLLIMRDEEENLKKHLPVWRDVADCFVVGVDDRTTDSTA 123
            LC+LL+MRDEEE +++HL  W DVA C V  +D+RT D +A
Sbjct:   13 LCVLLLMRDEEELIREHLSSWLDVAWCTVGAIDERTRDHSA 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20742.6257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G857_ECTSI7.110e-1270.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JQU4_9STRA1.040e-656.10Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20742contigL-elsbetiae_contig20742:1071..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.4768295-CDS-L-elsbetiae_contig20742:1070..11751622815852.4768295-CDS-L-elsbetiae_contig20742:1070..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20742 1071..1175 -
1691683146.6273265-CDS-L-elsbetiae_contig20742:1070..11751691683146.6273265-CDS-L-elsbetiae_contig20742:1070..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20742 1071..1175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.4885573-UTR-L-elsbetiae_contig20742:1175..11931622815852.4885573-UTR-L-elsbetiae_contig20742:1175..1193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20742 1176..1193 -
1691683146.636737-UTR-L-elsbetiae_contig20742:1175..11931691683146.636737-UTR-L-elsbetiae_contig20742:1175..1193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20742 1176..1193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20742.6257.1prot_L-elsbetiae_contig20742.6257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20742 1071..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20742.6257.1

>prot_L-elsbetiae_contig20742.6257.1 ID=prot_L-elsbetiae_contig20742.6257.1|Name=mRNA_L-elsbetiae_contig20742.6257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
MRDEEENLKKHLPVWRDVADCFVVGVDDRTTDSTA
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mRNA from alignment at L-elsbetiae_contig20742:1071..1193-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20742.6257.1 ID=mRNA_L-elsbetiae_contig20742.6257.1|Name=mRNA_L-elsbetiae_contig20742.6257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=123bp|location=Sequence derived from alignment at L-elsbetiae_contig20742:1071..1193- (Laminarionema elsbetiae ELsaHSoW15)
CTGTGCCTCTTACTTATAATGCGCGACGAAGAGGAAAACCTCAAAAAGCA
CCTGCCCGTGTGGAGGGATGTGGCCGATTGCTTCGTAGTCGGCGTAGATG
ATCGCACCACGGACAGTACGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20742:1071..1193-

>mRNA_L-elsbetiae_contig20742.6257.1 ID=mRNA_L-elsbetiae_contig20742.6257.1|Name=mRNA_L-elsbetiae_contig20742.6257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig20742:1071..1193- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGACGAAGAGGAAAACCTCAAAAAGCACCTGCCCGTGTGGAGGGA
TGTGGCCGATTGCTTCGTAGTCGGCGTAGATGATCGCACCACGGACAGTA
CGGCAATGCGCGACGAAGAGGAAAACCTCAAAAAGCACCTGCCCGTGTGG
AGGGATGTGGCCGATTGCTTCGTAGTCGGCGTAGATGATCGCACCACGGA
CAGTACGGCA
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