mRNA_L-elsbetiae_contig20742.6256.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20742.6256.1
Unique NamemRNA_L-elsbetiae_contig20742.6256.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20742.6256.1 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.150e-25
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 FPGCSHIIIADADWRPKLETVDKSELDFVHGSFPFLVWDHSGHTSRLVGWLLR 159
            FP  SHII+ADADWRP L TVDKSELDFVHGSFPFLVWDHSGHTSRL+GWL R
Sbjct:  162 FPDTSHIIVADADWRPDLATVDKSELDFVHGSFPFLVWDHSGHTSRLMGWLHR 214
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BLAST of mRNA_L-elsbetiae_contig20742.6256.1 vs. uniprot
Match: A0A482RZ88_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ88_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 4.770e-10
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 FPGCSHIIIADADWRPKLETVDKSELDFVHGSFPFLVWDHSGHTSRLVGWLL 156
            F   SH++IAD DW+P +ET+DK+ELD     F F+V+D SG T R + W L
Sbjct:  100 FSKASHVMIADPDWKPSVETIDKAELDDSALVFRFMVFDRSGETRRYIDWCL 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20742.6256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G857_ECTSI1.150e-2586.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RZ88_9ARCH4.770e-1050.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20742contigL-elsbetiae_contig20742:299..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2e-21
Seed eggNOG ortholog2880.D7G857
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2F0SW@1,2T1WJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.4400432-CDS-L-elsbetiae_contig20742:298..4571622815852.4400432-CDS-L-elsbetiae_contig20742:298..457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20742 299..457 +
1691683146.6164572-CDS-L-elsbetiae_contig20742:298..4571691683146.6164572-CDS-L-elsbetiae_contig20742:298..457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20742 299..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20742.6256.1prot_L-elsbetiae_contig20742.6256.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20742 299..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20742.6256.1

>prot_L-elsbetiae_contig20742.6256.1 ID=prot_L-elsbetiae_contig20742.6256.1|Name=mRNA_L-elsbetiae_contig20742.6256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
FPGCSHIIIADADWRPKLETVDKSELDFVHGSFPFLVWDHSGHTSRLVGW
LLR
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mRNA from alignment at L-elsbetiae_contig20742:299..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20742.6256.1 ID=mRNA_L-elsbetiae_contig20742.6256.1|Name=mRNA_L-elsbetiae_contig20742.6256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig20742:299..457+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCCTGGCTGCAGTCATATCATCATCGCGGATGCAGATTGGAGACCGAA
GCTGGAGACGGTGGACAAATCCGAGCTTGACTTCGTTCATGGCTCCTTCC
CGTTTCTTGTTTGGGATCACAGTGGGCACACCTCCCGGCTGGTGGGATGG
CTTCTGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20742:299..457+

>mRNA_L-elsbetiae_contig20742.6256.1 ID=mRNA_L-elsbetiae_contig20742.6256.1|Name=mRNA_L-elsbetiae_contig20742.6256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig20742:299..457+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCCTGGCTGCAGTCATATCATCATCGCGGATGCAGATTGGAGACCGAA
GCTGGAGACGGTGGACAAATCCGAGCTTGACTTCGTTCATGGCTCCTTCC
CGTTTCTTGTTTGGGATCACAGTGGGCACACCTCCCGGCTGGTGGGATGG
CTTCTGCGATTCCCTGGCTGCAGTCATATCATCATCGCGGATGCAGATTG
GAGACCGAAGCTGGAGACGGTGGACAAATCCGAGCTTGACTTCGTTCATG
GCTCCTTCCCGTTTCTTGTTTGGGATCACAGTGGGCACACCTCCCGGCTG
GTGGGATGGCTTCTGCGA
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