mRNA_L-elsbetiae_contig2072.6248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2072.6248.1
Unique NamemRNA_L-elsbetiae_contig2072.6248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2072.6248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2072contigL-elsbetiae_contig2072:13398..14946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size440
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2072.6248.1prot_L-elsbetiae_contig2072.6248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2072 13469..14946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.6369271-UTR-L-elsbetiae_contig2072:13397..134681622815851.6369271-UTR-L-elsbetiae_contig2072:13397..13468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2072 13398..13468 -
1691683146.1323195-UTR-L-elsbetiae_contig2072:13397..134681691683146.1323195-UTR-L-elsbetiae_contig2072:13397..13468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2072 13398..13468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.649291-CDS-L-elsbetiae_contig2072:13468..136251622815851.649291-CDS-L-elsbetiae_contig2072:13468..13625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2072 13469..13625 -
1691683146.141578-CDS-L-elsbetiae_contig2072:13468..136251691683146.141578-CDS-L-elsbetiae_contig2072:13468..13625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2072 13469..13625 -
1622815851.661036-CDS-L-elsbetiae_contig2072:14734..149461622815851.661036-CDS-L-elsbetiae_contig2072:14734..14946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2072 14735..14946 -
1691683146.1499903-CDS-L-elsbetiae_contig2072:14734..149461691683146.1499903-CDS-L-elsbetiae_contig2072:14734..14946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2072 14735..14946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2072.6248.1

>prot_L-elsbetiae_contig2072.6248.1 ID=prot_L-elsbetiae_contig2072.6248.1|Name=mRNA_L-elsbetiae_contig2072.6248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
VLLPPARVLAWLDLSHSIDSKFFHVVQRLTPTSFADFQLQLKLASTPRLW
GSDPEQRSVCPVTGQAAGARRARMATENDPAPLPLRAQSPGSPLESPLAA
PEPPSAAKTTRAARTATPPLPG*
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mRNA from alignment at L-elsbetiae_contig2072:13398..14946-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2072.6248.1 ID=mRNA_L-elsbetiae_contig2072.6248.1|Name=mRNA_L-elsbetiae_contig2072.6248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1549bp|location=Sequence derived from alignment at L-elsbetiae_contig2072:13398..14946- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTTCTACCCCCCGCGCGTGTGCTTGCCTGGCTGGATCTATCCCATAG
TATTGATTCGAAGTTTTTTCATGTGGTGCAGAGGCTAACACCAACAAGTT
TTGCTGACTTTCAGCTGCAGCTGAAGCTGGCATCGACACCGCGCCTGTGG
GGCAGCGATCCGGAGCAGCGGTCAGTATGTCCGGTGACCGGGCAAGCAGC
GGGGGCAAGAAGGTGCGACTCAATAATGTAATATGTTGTTGTGGGGTATC
CGCTAAGAGGTGTGTGAAATTCGAAACTTCGCTTTGAAGTTGCCCATAAG
CTGTTGTACGAGAGTGCCTTCCTCTCCACTACTACAAGTACTACAACCTA
TGGTAACAAACTACTGCGGTAGTACAACTGCTGGTGTTGGGTTCATCAAG
TTGCTTGATTATCACGTTTATTATTGTACATCAAGTGATATGATGTCCTG
TGATACTACGTAGTTGTTCTCCCCTCGGGCATTCAGTCAGGGTGTGATCC
TGCGCACAGCGATGGTGCTACACTACATGTAGGCCCCCTTACTCGTGTGT
ATAACAGACAGGGTGCCCAACTCTGTGTGCGGGCTGCGGGCTGCCGTACT
CTCTCTTTTTTCTAGAGGTGAACGGCACGGGTTCAATGTCATTGTGTTTA
TGCGGGGCTGCGAATCAACATACTCGTCTCATGATGTTATCCTAGTCTAA
GCAGCCAAAACAACAGATTCATCCTTGAAGAATACCCAACCTAAATCAAC
ATAAAATCAGAAATGCGTCTTGAAGGACGACCGGCAACGCCGGGAAAGTG
CCAGCAATACACTTGTACATAGTTCCACAAATGAACCCGGTACTTCATCT
TCTTGACACAGCAGTGGAAGGTGTGCGGAAAGCAAGCAGGCCCCAACCAC
CGCCACAACATGTCAAAACCATAACCATTCTCCAAATATAAAATGTAGAA
ATCCACAACAGCAAAGCGGGCGGATACATGACTAAATGCCAGGGTTAACT
CTCACGACCTTGGTACTGATGCTGTTGCTCACGAATAAGACACAGGACAT
GTGTTCAAAAATATAGGAGTACTTGTTGCCTGCTGAATAGACTACACTTG
CTAGACTAACTTATTCATCGTATCTGTCTCAACGATGAAGTGCAGTTGAG
CTTACGTTGCGTTGACCAAGCGTTGATTTCCTTCCAGCGAGTGAGTGCAC
CAACGATCAAACGGGGGTGCTTCTGCCGTTCATGTACCGCGCACACGCGA
GACAACATCCTCTCCCTCCGACCCCCACCCCTGACGCCTTTCTTTCTCGT
GTGCGTACACACCGGGTGCAGGGCCCGCATGGCAACCGAAAACGATCCCG
CACCCCTTCCTCTACGGGCTCAGAGTCCCGGATCGCCCCTAGAAAGCCCT
TTGGCCGCACCCGAGCCACCGAGCGCAGCAAAAACAACAAGAGCAGCACG
CACAGCGACGCCACCCCTCCCGGGGTAGCTTCGCGGCGATCGTCCCTAGG
TGCTCACGACGAGTTCCTGGACGACGTGCGCTTCGACGTGGCCCCCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2072:13398..14946-

>mRNA_L-elsbetiae_contig2072.6248.1 ID=mRNA_L-elsbetiae_contig2072.6248.1|Name=mRNA_L-elsbetiae_contig2072.6248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig2072:13398..14946- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTTCTACCCCCCGCGCGTGTGCTTGCCTGGCTGGATCTATCCCATAG
TATTGATTCGAAGTTTTTTCATGTGGTGCAGAGGCTAACACCAACAAGTT
TTGCTGACTTTCAGCTGCAGCTGAAGCTGGCATCGACACCGCGCCTGTGG
GGCAGCGATCCGGAGCAGCGGTCAGTATGTCCGGTGACCGGGCAAGCAGC
GGGGGCAAGAAGGTGCTTCTACCCCCCGCGCGTGTGCTTGCCTGGCTGGA
TCTATCCCATAGTATTGATTCGAAGTTTTTTCATGTGGTGCAGAGGCTAA
CACCAACAAGTTTTGCTGACTTTCAGCTGCAGCTGAAGCTGGCATCGACA
CCGCGCCTGTGGGGCAGCGATCCGGAGCAGCGGTCAGTATGTCCGGTGAC
CGGGCAAGCAGCGGGGGCAAGAAGGGCCCGCATGGCAACCGAAAACGATC
CCGCACCCCTTCCTCTACGGGCTCAGAGTCCCGGATCGCCCCTAGAAAGC
CCTTTGGCCGCACCCGAGCCACCGAGCGCAGCAAAAACAACAAGAGCAGC
ACGCACAGCGACGCCACCCCTCCCGGGGTAGGGCCCGCATGGCAACCGAA
AACGATCCCGCACCCCTTCCTCTACGGGCTCAGAGTCCCGGATCGCCCCT
AGAAAGCCCTTTGGCCGCACCCGAGCCACCGAGCGCAGCAAAAACAACAA
GAGCAGCACGCACAGCGACGCCACCCCTCCCGGGGTAG
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