mRNA_L-elsbetiae_contig2070.6242.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2070.6242.1
Unique NamemRNA_L-elsbetiae_contig2070.6242.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2070.6242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2070contigL-elsbetiae_contig2070:19950..20930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size981
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2070.6242.1prot_L-elsbetiae_contig2070.6242.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2070 20409..20900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.4479702-UTR-L-elsbetiae_contig2070:19949..204081622815851.4479702-UTR-L-elsbetiae_contig2070:19949..20408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2070 19950..20408 +
1691683146.0174875-UTR-L-elsbetiae_contig2070:19949..204081691683146.0174875-UTR-L-elsbetiae_contig2070:19949..20408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2070 19950..20408 +
1622815851.4704254-UTR-L-elsbetiae_contig2070:20900..209301622815851.4704254-UTR-L-elsbetiae_contig2070:20900..20930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2070 20901..20930 +
1691683146.0425105-UTR-L-elsbetiae_contig2070:20900..209301691683146.0425105-UTR-L-elsbetiae_contig2070:20900..20930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2070 20901..20930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.460962-CDS-L-elsbetiae_contig2070:20408..209001622815851.460962-CDS-L-elsbetiae_contig2070:20408..20900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2070 20409..20900 +
1691683146.0261037-CDS-L-elsbetiae_contig2070:20408..209001691683146.0261037-CDS-L-elsbetiae_contig2070:20408..20900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2070 20409..20900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2070.6242.1

>prot_L-elsbetiae_contig2070.6242.1 ID=prot_L-elsbetiae_contig2070.6242.1|Name=mRNA_L-elsbetiae_contig2070.6242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MLSLERVASLATLNHIIFPFLGLIPTPTLHPVHTAKTAYIFYVKRTPVTR
TPVQHHVAASYPHLHDDQIKTATFLFSSDRTKEHLFHFERERPCRQIAKI
HHISATIAGKNENKQPGNDKCRIPHRLQAQRQAQRRFTTHHRRCRYLCPS
HHRQHSCSCDAAD*
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mRNA from alignment at L-elsbetiae_contig2070:19950..20930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2070.6242.1 ID=mRNA_L-elsbetiae_contig2070.6242.1|Name=mRNA_L-elsbetiae_contig2070.6242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=981bp|location=Sequence derived from alignment at L-elsbetiae_contig2070:19950..20930+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAAATTTGGATCAGAGAAAGAAACCGAAAGCGAAATAGACTAAAGCC
AGACGCCGAAAAAAATAAATGAAAAACAACATAAAATTTCCAACCTTATC
CCTTAGATATATCTATATAGTCTAGTACTGGAAGCGTGTTTGGCGACGAT
TTGGCGACACCTAACTTTGGTCACTGTTTTATGACTTTGGGGTGAACGGG
CGGTCTTGGTATATCCCGTACAAAGGTCTGGGAGTACCCTGCCGAGTTGT
ATAGACACTATACCTACCGTATATGGCCTCCTCACAGCTCCACAGCAGCG
CTGTGGACACAACGAGTTGTCGTCGATATCTCAAAATCACGAAAAAATCA
ACGTCTCTGCGGTTCCAAACTGATTGCTTTCCGCGGCGCCCCAGTGATTT
GAGCCTTTGAGCTGACAGCACGCACACACAGCTTCGCTGTAACTCTCGAG
AACCACCGCATGCTGAGCCTAGAGCGTGTTGCTTCGCTCGCTACACTGAA
CCACATAATTTTTCCCTTTTTGGGCTTAATCCCAACACCAACCCTCCACC
CGGTGCATACAGCAAAAACGGCATATATATTTTACGTCAAACGAACGCCA
GTCACCCGAACGCCAGTCCAGCACCACGTTGCTGCCTCATACCCTCATTT
GCACGACGATCAAATCAAGACAGCCACCTTCTTATTCTCGTCCGATCGAA
CAAAAGAGCACCTCTTTCATTTCGAAAGAGAACGCCCATGTCGGCAGATA
GCAAAAATACACCATATTTCTGCCACCATTGCCGGAAAAAATGAAAACAA
ACAGCCGGGAAACGATAAATGCCGAATACCGCACCGTCTCCAGGCACAAC
GCCAAGCACAGCGGAGATTTACAACACACCACCGACGCTGCCGCTATCTG
TGCCCCAGCCATCACCGTCAGCACTCGTGTTCATGCGATGCTGCGGATTG
ATGCCGGCAACAATGCCCGTGACTCCCAATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2070:19950..20930+

>mRNA_L-elsbetiae_contig2070.6242.1 ID=mRNA_L-elsbetiae_contig2070.6242.1|Name=mRNA_L-elsbetiae_contig2070.6242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig2070:19950..20930+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGAGCCTAGAGCGTGTTGCTTCGCTCGCTACACTGAACCACATAAT
TTTTCCCTTTTTGGGCTTAATCCCAACACCAACCCTCCACCCGGTGCATA
CAGCAAAAACGGCATATATATTTTACGTCAAACGAACGCCAGTCACCCGA
ACGCCAGTCCAGCACCACGTTGCTGCCTCATACCCTCATTTGCACGACGA
TCAAATCAAGACAGCCACCTTCTTATTCTCGTCCGATCGAACAAAAGAGC
ACCTCTTTCATTTCGAAAGAGAACGCCCATGTCGGCAGATAGCAAAAATA
CACCATATTTCTGCCACCATTGCCGGAAAAAATGAAAACAAACAGCCGGG
AAACGATAAATGCCGAATACCGCACCGTCTCCAGGCACAACGCCAAGCAC
AGCGGAGATTTACAACACACCACCGACGCTGCCGCTATCTGTGCCCCAGC
CATCACCGTCAGCACTCGTGTTCATGCGATGCTGCGGATTGAATGCTGAG
CCTAGAGCGTGTTGCTTCGCTCGCTACACTGAACCACATAATTTTTCCCT
TTTTGGGCTTAATCCCAACACCAACCCTCCACCCGGTGCATACAGCAAAA
ACGGCATATATATTTTACGTCAAACGAACGCCAGTCACCCGAACGCCAGT
CCAGCACCACGTTGCTGCCTCATACCCTCATTTGCACGACGATCAAATCA
AGACAGCCACCTTCTTATTCTCGTCCGATCGAACAAAAGAGCACCTCTTT
CATTTCGAAAGAGAACGCCCATGTCGGCAGATAGCAAAAATACACCATAT
TTCTGCCACCATTGCCGGAAAAAATGAAAACAAACAGCCGGGAAACGATA
AATGCCGAATACCGCACCGTCTCCAGGCACAACGCCAAGCACAGCGGAGA
TTTACAACACACCACCGACGCTGCCGCTATCTGTGCCCCAGCCATCACCG
TCAGCACTCGTGTTCATGCGATGCTGCGGATTGA
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