mRNA_L-elsbetiae_contig207.6241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig207.6241.1
Unique NamemRNA_L-elsbetiae_contig207.6241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig207.6241.1 vs. uniprot
Match: D7FHS6_ECTSI (Heat shock protein 40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 5.300e-23
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   13 GASNKRGSLIVEFEVKFPPRLREAHLAALRVVLTENEIAVLEDVLKLMSARKGKHHWPEMGPEEYRFTHFCSTEGDGYDGYGDTSHPQCI 282
            G    RGSL+++FEV FP RLREAHLAALRVVLTE EIA+LEDVLKLMS RK K   P M P EY +T  CS++ D  D   + S+P+C+
Sbjct:  422 GGDGDRGSLVIDFEVDFPSRLREAHLAALRVVLTEEEIALLEDVLKLMSTRKSKAR-PPMEPLEYLYTRICSSD-DEDDFINNGSNPRCV 509
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig207.6241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHS6_ECTSI5.300e-2360.00Heat shock protein 40 n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig207contigL-elsbetiae_contig207:46304..47020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.4085538-CDS-L-elsbetiae_contig207:46303..464711622815851.4085538-CDS-L-elsbetiae_contig207:46303..46471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 46304..46471 +
1691683145.9998667-CDS-L-elsbetiae_contig207:46303..464711691683145.9998667-CDS-L-elsbetiae_contig207:46303..46471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 46304..46471 +
1622815851.4194818-CDS-L-elsbetiae_contig207:46902..470191622815851.4194818-CDS-L-elsbetiae_contig207:46902..47019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 46903..47019 +
1691683146.009005-CDS-L-elsbetiae_contig207:46902..470191691683146.009005-CDS-L-elsbetiae_contig207:46902..47019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 46903..47019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig207.6241.1prot_L-elsbetiae_contig207.6241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig207 46304..47019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig207.6241.1

>prot_L-elsbetiae_contig207.6241.1 ID=prot_L-elsbetiae_contig207.6241.1|Name=mRNA_L-elsbetiae_contig207.6241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
AEGDGASNKRGSLIVEFEVKFPPRLREAHLAALRVVLTENEIAVLEDVLK
LMSARKGKHHWPEMGPEEYRFTHFCSTEGDGYDGYGDTSHPQCIP
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mRNA from alignment at L-elsbetiae_contig207:46304..47020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig207.6241.1 ID=mRNA_L-elsbetiae_contig207.6241.1|Name=mRNA_L-elsbetiae_contig207.6241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=717bp|location=Sequence derived from alignment at L-elsbetiae_contig207:46304..47020+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGAGGGGGACGGGGCGAGCAACAAGCGAGGGTCCCTCATTGTCGAGTT
TGAGGTGAAATTCCCTCCGAGGCTTCGAGAGGCCCATCTTGCCGCGCTGC
GAGTCGTGCTGACGGAGAACGAGATCGCCGTTTTGGAGGACGTTTTGAAG
CTCATGTCGGCGAGGAAGGTGCGCATCTCTACGTTACCTCCCTAGCAATG
ATAAGAACATGTGTTGTAAACCACGACAACAAGCGTTTGGATAATTCTTC
GAATCTACGCTGTTGTTTTTTTACCTCCGCGTTTGGTCTGACCACTGCCT
CCTTGTTGTGAACCGTCCGTATTCATCGCTTGAACGGCATGCTCACACAC
CAACAGTGTTCCTACCGTCAGGATGTTTTGAGGCTCGCCGGCATGCTATT
GAATTGGGCACAGAGTAAGTTTTCGTTTGCTTTGAGCTGATGGGACTATG
TAAGAGAAGGCGAGCAGATATCTATCTAGATACACATACATGCATGCTGT
TTTACTTCCTTCTTCGCTGTGTGGATTATGTAGTCTATATCCCACTTGCT
CATTTTCCGTCTCGATCGCTATTTTGTCAAACTTTCCCTGGGGCAGCAGG
GCAAACACCACTGGCCCGAGATGGGCCCTGAGGAGTACCGCTTCACCCAT
TTCTGCAGCACTGAGGGCGATGGCTACGATGGCTATGGCGACACAAGCCA
TCCTCAATGTATCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig207:46304..47020+

>mRNA_L-elsbetiae_contig207.6241.1 ID=mRNA_L-elsbetiae_contig207.6241.1|Name=mRNA_L-elsbetiae_contig207.6241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig207:46304..47020+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGAGGGGGACGGGGCGAGCAACAAGCGAGGGTCCCTCATTGTCGAGTT
TGAGGTGAAATTCCCTCCGAGGCTTCGAGAGGCCCATCTTGCCGCGCTGC
GAGTCGTGCTGACGGAGAACGAGATCGCCGTTTTGGAGGACGTTTTGAAG
CTCATGTCGGCGAGGAAGGCAGAGGGGGACGGGGCGAGCAACAAGCGAGG
GTCCCTCATTGTCGAGTTTGAGGTGAAATTCCCTCCGAGGCTTCGAGAGG
CCCATCTTGCCGCGCTGCGAGTCGTGCTGACGGAGAACGAGATCGCCGTT
TTGGAGGACGTTTTGAAGCTCATGTCGGCGAGGAAGGGCAAACACCACTG
GCCCGAGATGGGCCCTGAGGAGTACCGCTTCACCCATTTCTGCAGCACTG
AGGGCGATGGCTACGATGGCTATGGCGACACAAGCCATCCTCAATGTATC
CCGGGCAAACACCACTGGCCCGAGATGGGCCCTGAGGAGTACCGCTTCAC
CCATTTCTGCAGCACTGAGGGCGATGGCTACGATGGCTATGGCGACACAA
GCCATCCTCAATGTATCCCG
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