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Homology
BLAST of mRNA_L-elsbetiae_contig207.6238.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI) HSP 1 Score: 120 bits (302), Expect = 2.770e-27 Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 2
Query: 8 VIPGDSLMLSAIKDATVSTSTVNPARITSAVQKMRPEWCVNKRRVKRLLRTINNDAWKAAINPTVTAGNPGRDGSTAVA 244
++P DS + AIKDATVSTSTVNPARITSAVQKMRP+WCVNKRRVKRLLR++NNDAWKAA+N TV AGNP GS+ A
Sbjct: 33 MLPDDSTLTIAIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTTA 111
BLAST of mRNA_L-elsbetiae_contig207.6238.1 vs. uniprot
Match: A0A6H5K3S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S6_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 2.140e-11 Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 107 MRPEWCVNKRRVKRLLRTINNDAWKAAINPTVTAGNPGRDGS--TAVATS 250
MRP+WCVNKRRVKRLLR++NNDAWKAA+N TV AGNP GS T +AT+
Sbjct: 1 MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSGRGSSTTTIATA 50
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-07_006590.1 |
| Exons | 3 |
| Model size | 1592 |
| Cds size | 936 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815850.7143853-UTR-L-elsbetiae_contig207:26417..26956 | 1622815850.7143853-UTR-L-elsbetiae_contig207:26417..26956 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 26418..26956 - |
| 1691683145.5137708-UTR-L-elsbetiae_contig207:26417..26956 | 1691683145.5137708-UTR-L-elsbetiae_contig207:26417..26956 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 26418..26956 - |
| 1622815850.7453692-UTR-L-elsbetiae_contig207:27902..27904 | 1622815850.7453692-UTR-L-elsbetiae_contig207:27902..27904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 27903..27904 - |
| 1691683145.5409362-UTR-L-elsbetiae_contig207:27902..27904 | 1691683145.5409362-UTR-L-elsbetiae_contig207:27902..27904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 27903..27904 - |
| 1622815850.7554636-UTR-L-elsbetiae_contig207:29052..29167 | 1622815850.7554636-UTR-L-elsbetiae_contig207:29052..29167 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 29053..29167 - |
| 1691683145.5507524-UTR-L-elsbetiae_contig207:29052..29167 | 1691683145.5507524-UTR-L-elsbetiae_contig207:29052..29167 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig207 29053..29167 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815850.7246594-CDS-L-elsbetiae_contig207:26956..27776 | 1622815850.7246594-CDS-L-elsbetiae_contig207:26956..27776 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig207 26957..27776 - |
| 1691683145.522282-CDS-L-elsbetiae_contig207:26956..27776 | 1691683145.522282-CDS-L-elsbetiae_contig207:26956..27776 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig207 26957..27776 - |
| 1622815850.7349267-CDS-L-elsbetiae_contig207:27786..27902 | 1622815850.7349267-CDS-L-elsbetiae_contig207:27786..27902 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig207 27787..27902 - |
| 1691683145.5309818-CDS-L-elsbetiae_contig207:27786..27902 | 1691683145.5309818-CDS-L-elsbetiae_contig207:27786..27902 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig207 27787..27902 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig207.6238.1 >prot_L-elsbetiae_contig207.6238.1 ID=prot_L-elsbetiae_contig207.6238.1|Name=mRNA_L-elsbetiae_contig207.6238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=312bp
MVREQAPCEEVAPHHQQRRLEGRHQPDGNRRQPRPRRQHGGGNVAATAPI
ASPSPVEAEVPVETVTTRSSARAAAKAAKAAKAAEKALRLADKAAAKAAE
KAAVAAAKVTADSSGAAVAAAAAASCNTAPASPGSPAGPTYGSMAAVPVP
PTVDSLRLPPPASISPSNPAPSGPASSSTTAAAAAAATGARAAEGTAAAA
AAPWGGAGGGDEEPPLSGSLELQPDLELEPGVDLKADLGIGAEEGRGSDA
AADNGDGGDRSEPADNLGFEMIEEAEVAAAAASSSASAAEGDGGAAGKVR
KAWPWAWTKSS* back to topmRNA from alignment at L-elsbetiae_contig207:26418..29167- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig207.6238.1 ID=mRNA_L-elsbetiae_contig207.6238.1|Name=mRNA_L-elsbetiae_contig207.6238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2750bp|location=Sequence derived from alignment at L-elsbetiae_contig207:26418..29167- (Laminarionema elsbetiae ELsaHSoW15)
CGCTAGCGTAATCCCTGGCGACAGCTTGATGCTGAGCGCCATCAAGGACG
CCACCGTCAGCACCTCTACAGTCAACCCAGCGAGAATTACGTCCGCTGTT
CAGAAGATGCGACCGGTAAGTTGAAAAACACGTATCTCATCAAAATCATC
AGCAAAATTGCAAATTCGCGAGAAAAGCGTTGCGTATTTTTTTGCATCGT
AATAAACTCGCCGCATATCTGCGCTCTAAAACACAGTCATTTATCATTTA
TCTCGGACCGAAAGTTCGATCGAAGGCTTATTTTCACAAGACCCAGCTGC
CTCTCTTCTCACGCTCTTTGTCTCGTTCCTTGTTCGAGACGGTCGTCGGC
ATACTGTCTCTGTGGACTATGGTCGCCCGTTGTGTTGGGGATGGTTCGCT
TTGCTTTGTAGGCATACGCGTCCCGCCCGCAGCGGAGCTTAGATCATCCG
CGTTGAACGTCGGCCGGTTTGAAGGATCGACCAGGCATGGTCCGCACAGC
GGCGAGCACGTCACAGCGTACCCCCCCGCGCCCTTTTGGTCAGAGTCTCT
CTCTCTGTCAAGTCAAGCGCGTGCATAGGCCATCCGTGTGCGTACGCTAG
GTTACTAGACAGCTATGTATGTGTCGATATCTCGCGAACGGGAACGCAGA
TACATACTTGTCTGTGAGCTATTTATTTGCCCGACGACGCCGTCGGCAAA
AAGATGCGCGATGCAACAGCATCATGAATAGGTAATGTAAGCATATCATT
GAGTGATCATGTTGACACATAGCGCGTTTGTTTTTGCCGACTCCACCTTC
TGGGGTGGTGTGGCCAGCTTGCAAGCAAGCGTGTGACGCACATCGGAACC
AAAGTATTTTTTCTTCATGGACGTGACTTGAATTGAAGATTTGAAAAGCC
CTTTTAATTCCGTTGTCAAATGCATTCGTCATCGGTACAATAAATGAACC
TTGATGCATCCCTGTGTGCGCACATGCGCGTGCGCGTTCCACTTATCCAC
CTTTGTCAAAGGTAGGTAATACGCTGCTTTCGTGAATATCTTTTTGGTTT
TTGGTTTTTGGTTTTTGTCTATTTCGTTCCCACTTTCACTTCTCACATGC
GGGCCTATATTAGGAGGTAATTTAGGTTCATATTTCCAGGAACGGCGTCG
TCGGATCACTTTTTTTGTTGTGGTTGTTATATGTATGTCCCTCGCTTCTC
GCCTCTCGACACGCATACCAAACGGCCACGATCAACATCGTAGCGTTTTC
CCTTTGTTCGCAGGAATGGTGCGTGAACAAGCGCCGTGTGAAGAGGTTGC
TCCGCACCATCAACAACGACGCCTGGAAGGCCGCCATCAACCCGACGGTA
ACCGCCGGCAACCCCGGCCGCGACGGCAGCAGCGGCGGCAGCGGCGGTGG
CAACGTCGCCGCGACGGCGCCGATCGCTTCCCCCTCCCCGGTGGAAGCCG
AAGTGCCGGTGGAAACGGTCACCACCCGCAGCAGCGCCAGGGCGGCGGCG
AAAGCGGCCAAGGCAGCCAAGGCCGCCGAGAAGGCGCTGAGGCTGGCCGA
CAAGGCCGCGGCGAAAGCGGCAGAGAAGGCCGCCGTTGCCGCCGCCAAGG
TGACCGCGGACTCGTCGGGGGCGGCGGTGGCGGCGGCGGCGGCGGCGTCG
TGCAACACGGCCCCGGCTTCCCCGGGGTCGCCGGCGGGGCCGACGTACGG
GTCGATGGCCGCCGTGCCGGTGCCGCCGACCGTGGACTCGTTGCGGCTCC
CGCCGCCGGCGTCGATCTCTCCCTCGAACCCCGCCCCCTCGGGCCCGGCC
TCTTCGTCAACAACAGCGGCGGCGGCAGCAGCAGCAACAGGGGCAAGGGC
CGCTGAAGGCACTGCCGCCGCCGCCGCCGCTCCCTGGGGTGGGGCAGGCG
GCGGCGACGAAGAACCGCCGCTCAGCGGCAGCCTCGAGCTACAGCCCGAC
CTGGAGCTCGAGCCGGGGGTGGATCTCAAGGCCGACCTGGGGATCGGCGC
AGAGGAGGGAAGAGGAAGCGATGCCGCCGCCGACAACGGCGACGGCGGTG
ACCGGTCGGAGCCCGCCGACAACCTCGGGTTCGAGATGATCGAAGAGGCC
GAGGTCGCCGCCGCGGCCGCTTCTTCTTCGGCGTCGGCGGCCGAGGGAGA
CGGCGGCGCTGCCGGTAAGGTCCGCAAGGCGTGGCCCTGGGCTTGGACCA
AGAGCAGCTGAGGTTCGATATTTTCAGCTGGTCGGTCGATGTACATAATG
TAGAAAGCCACCCAGTAGTACCGGGGGAGGGGGGATCACATGTTTCCTGG
CCCTCTCTTATCCACGGCCTGCTGCTTGGTATGTAGCTCTTGCACCGTGG
CCGTTTTACCGGCCCATGGTAGCTCTTGGCTCTCGGCGGCGAGGGGGGGG
ATGACGGTGGTTTTAGATACAGTCCGGCACGCGTTGAGGGTAGGTGGCAA
GGATGAAACGTCGGGGTTGTCGGGCGTGAGTGCGCGAGTTGGAGGCGTTA
TGGTGTGTATCTCGCCTTGCATGCTCTACGCAAAGCCCGCTCTACAGCGT
AGGGAAGTGGCTTGCACATGATGTTATATAGATATAAATTATACATAGGA
AGAAACAAAAAAAGGTTCTAGTATGCCCGTGATAACCGCGGCGGCACTCG
GCCGCGTACATTTACATATCCTCTTCATATCTATATATTTCAAGTTTTTT
TTGTCAGACTTGTACATCTTTTTTGCCGAAGGGGGTCCGGTTGATTTGGG
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig207:26418..29167- >mRNA_L-elsbetiae_contig207.6238.1 ID=mRNA_L-elsbetiae_contig207.6238.1|Name=mRNA_L-elsbetiae_contig207.6238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1872bp|location=Sequence derived from alignment at L-elsbetiae_contig207:26418..29167- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGTGAACAAGCGCCGTGTGAAGAGGTTGCTCCGCACCATCAACA
ACGACGCCTGGAAGGCCGCCATCAACCCGACGGTAACCGCCGGCAACCCC
GGCCGCGACGGCAGCAATGGTGCGTGAACAAGCGCCGTGTGAAGAGGTTG
CTCCGCACCATCAACAACGACGCCTGGAAGGCCGCCATCAACCCGACGGT
AACCGCCGGCAACCCCGGCCGCGACGGCAGCACGGCGGTGGCAACGTCGC
CGCGACGGCGCCGATCGCTTCCCCCTCCCCGGTGGAAGCCGAAGTGCCGG
TGGAAACGGTCACCACCCGCAGCAGCGCCAGGGCGGCGGCGAAAGCGGCC
AAGGCAGCCAAGGCCGCCGAGAAGGCGCTGAGGCTGGCCGACAAGGCCGC
GGCGAAAGCGGCAGAGAAGGCCGCCGTTGCCGCCGCCAAGGTGACCGCGG
ACTCGTCGGGGGCGGCGGTGGCGGCGGCGGCGGCGGCGTCGTGCAACACG
GCCCCGGCTTCCCCGGGGTCGCCGGCGGGGCCGACGTACGGGTCGATGGC
CGCCGTGCCGGTGCCGCCGACCGTGGACTCGTTGCGGCTCCCGCCGCCGG
CGTCGATCTCTCCCTCGAACCCCGCCCCCTCGGGCCCGGCCTCTTCGTCA
ACAACAGCGGCGGCGGCAGCAGCAGCAACAGGGGCAAGGGCCGCTGAAGG
CACTGCCGCCGCCGCCGCCGCTCCCTGGGGTGGGGCAGGCGGCGGCGACG
AAGAACCGCCGCTCAGCGGCAGCCTCGAGCTACAGCCCGACCTGGAGCTC
GAGCCGGGGGTGGATCTCAAGGCCGACCTGGGGATCGGCGCAGAGGAGGG
AAGAGGAAGCGATGCCGCCGCCGACAACGGCGACGGCGGTGACCGGTCGG
AGCCCGCCGACAACCTCGGGTTCGAGATGATCGAAGAGGCCGAGGTCGCC
GCCGCGGCCGCTTCTTCTTCGGCGTCGGCGGCCGAGGGAGACGGCGGCGC
TGCCGGTAAGGTCCGCAAGGCGTGGCCCTGGGCTTGGACCAAGAGCAGCT
GACGGCGGTGGCAACGTCGCCGCGACGGCGCCGATCGCTTCCCCCTCCCC
GGTGGAAGCCGAAGTGCCGGTGGAAACGGTCACCACCCGCAGCAGCGCCA
GGGCGGCGGCGAAAGCGGCCAAGGCAGCCAAGGCCGCCGAGAAGGCGCTG
AGGCTGGCCGACAAGGCCGCGGCGAAAGCGGCAGAGAAGGCCGCCGTTGC
CGCCGCCAAGGTGACCGCGGACTCGTCGGGGGCGGCGGTGGCGGCGGCGG
CGGCGGCGTCGTGCAACACGGCCCCGGCTTCCCCGGGGTCGCCGGCGGGG
CCGACGTACGGGTCGATGGCCGCCGTGCCGGTGCCGCCGACCGTGGACTC
GTTGCGGCTCCCGCCGCCGGCGTCGATCTCTCCCTCGAACCCCGCCCCCT
CGGGCCCGGCCTCTTCGTCAACAACAGCGGCGGCGGCAGCAGCAGCAACA
GGGGCAAGGGCCGCTGAAGGCACTGCCGCCGCCGCCGCCGCTCCCTGGGG
TGGGGCAGGCGGCGGCGACGAAGAACCGCCGCTCAGCGGCAGCCTCGAGC
TACAGCCCGACCTGGAGCTCGAGCCGGGGGTGGATCTCAAGGCCGACCTG
GGGATCGGCGCAGAGGAGGGAAGAGGAAGCGATGCCGCCGCCGACAACGG
CGACGGCGGTGACCGGTCGGAGCCCGCCGACAACCTCGGGTTCGAGATGA
TCGAAGAGGCCGAGGTCGCCGCCGCGGCCGCTTCTTCTTCGGCGTCGGCG
GCCGAGGGAGACGGCGGCGCTGCCGGTAAGGTCCGCAAGGCGTGGCCCTG
GGCTTGGACCAAGAGCAGCTGA back to top
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