mRNA_L-elsbetiae_contig2064.6221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2064.6221.1 vs. uniprot
Match: D8LPQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ5_ECTSI) HSP 1 Score: 2184 bits (5660), Expect = 0.000e+0 Identity = 1560/2790 (55.91%), Postives = 1756/2790 (62.94%), Query Frame = 1
Query: 1 LSAMEATMLTVDRLVDGINGGDPGGARLYMSQLRENETLTMLECFEDMLSGKLPVAPPSLSSSGEAAPLSGSRGGSMAYRVPPNEFLKVLVEGNTTRLGGLHAVLQAIGRGDLQGRAASLCISEVRMCLSACAERSGAGDDDRTSALVAYRRMPLAQLRELAGICLSFSMD------SGRPAAGVYAGGRRGAEDANNRRVLMLEALPAVLGACCXXXXXXXXXXXXXXXXXGTDEDNDGRIDRSSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVNNDGRRWSNNSGRADGDIRNEARHKPR-GKVSASSXXXXXXXWSSGGLPERGEVVLRDVTDALLDRPWPLRLVLPLLVVFEEIYGLIELLD---CRPRQPAIESAGGRRAGEDSVWARVRSRLMETVWMGGLDGADFTGV---VCVLCDTDGRQNYEREAQNSLARLPQELPKGNGAVRAATVHQVQESEL--SGGKQVEEGRDAGKSLGAKHSAQAGGSPSWSGSWLSCLRQLYAAVPPEWVSTVELVLEQTLHQMPGVAESLLDAIQDASRCSXXXXXXXXXXXXXXXXXXXXXGRGTVPSREERSRCNTGPPSWSSAGGLVRSTPTSVGNDLALLILLLREASPLRACSLPLLPVGVDRGRRAEDGVRHLLLEASRWGLEGAKASVG---GKDRAPECRRRAGAVSGTRALLREVLCSEPRFTG-GDGNGVREYSGRGGXXXXXXXXXXXXXXXSSGVVSERASQLLELALRWLEEGDGGEGVGGDGGAVFGNDDDG-GAGLSIRDVASEIVSAVFDAVVEARPRLLRALLSGVFDMNQSGTACAWSCMRAWEALMAQEAELECRRLAPHSQGVSDTLGRLTLLPRGRARRVVESVLPLADVCSTQASALMSLCRKCSVQGESKGRLLTLHAVTCILAWNAHRAKSGRNGGCLDQEGMQEDLVGMFRRAFESGLQTAARADALHLLATKLATPSPEDVGQSAAFAGGETAAAPVTQYS-VDRLRAAPSSASSRPPPRAALGREPSPPAVDLSALSDLREFLTARLFRFLVHKDEVLDADSSAAGGNDGGGNPRGVDRYXXXXXXXXXXXXXXXXXXHRRRGGRFQLVPLRLLEESVAPGMGHGFGGENNSGGRGHGVVRNVRGRGVVARDPIGHLLKCCWALVPALGAPVETAVPGGDAHERVMSARGKRAEVEAIARAVLGTG-RRRSGGGGRLAKSG------LEVCTREGEALVAVVDFLQGGGGMETLRVAAPSNQRAASPLDANSDVAEPPAPPPPTCHPGVVSPLTALGVVVTLSEALVDCLLSGSSCPPATPVLPASPXXXXXXXXXXXXPHPHH-----RKAPSSGPKARNRAPLVLWAVADAFTLLAAATRAADGIAGPAGGFSKQSNARTPESLSEIIVSLPAETLVLSRGPELNSMATAGGADAEDDDEGGEAAGRRSGKSRGRGGREGGGGDPMVQCSLLSPASALVFVKEFLGWAASETSRSPAALVAEGWDGGIGVWLGLIHSVQTLARALRNARGEGVDRHREGTGGASSKGKVAADDDPPAEAIALAIFQLRTAVGTPSAALDVLDPSAAAAAAKAPVFHDERSTNVSSSSLADSGSAAGNDASGARADDRSDVRRASRRPQPGTMITGFLKRMSERWKAALPWGLPSAAPLRRASPRLGRRSGXXXXXXXXXXGDA-PGSLKAEAEDLFFALRGGLLRAERLVLSILLVGPTATLASRAWTMRAALASARRRLGEENAEVIELGEVR-PTPFPAVETAAPRGCT---------NEEPPESGSGPARAA------------------------------RKDTGSKEGPVA-----------GAVAVREDDEEGD-WGGLGSLCRLAATEMREGLEDGLSVKLSQAYLDLIELLGSAALEHQHQARRTLATSSDGLAVLDVATLPRLCAEKESRRASAGACSTQNDGAIANGDRPEEDAGGTLLSIVTCHTVAQLKLFKRLISGAVRFDGVGVGYRLQASR-TGAVILAGLQARDRKLSRTVVGYGSRKMANLVELCPGSTSXXXXXXXXXXXKASKSLRAMPPSPPPPLERSSRLVVHCVQWIRARHGSRRGRAAMRLFEEDGCESSEEMEVGASGNGSDNGAGSCTDGYGDRDRDTGLPE-RESDGLQSRYSFRPEEVKFASSRECFVAMRTALVECETALSSAGSTAASSGFDVCSGGGGGGRSSTDGDLADVLATVSFGLREFFSPAVVTAVPTTKRTAAKRNEKKAAPDSAPVDATVTGPPSASAPAEQRGEQKNGGCEGKGTFGGASPLAALDIFPDTVKLLLMRVLERLYLVGRGVTLTASSVLAKPSSTATATVGKAQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATADAGKPGDQAGGAPAKAPAKXXXXXXXXXXXXXXXXAAVPAITPVLGTASRSTRSKSASSFSARQCKGAL----QGGLDKKAKRFSEPSSSGPEIYYEPKTPESAVNPLLAPLLPAAALASGDGLHLMLAARIWAEALRSRTQRGGDDPCRKRASTMLFKIERCELEIGTAAQKARQFLEQFEEGTKRSGAVGAGARDGRV-GSTKKRARGCCVGNGGGRAGAXXXXQAKAKHAAAAPPIGKCDEAVEDALRLLLSGADTLAAWRRDSAAKEKSRAARLNHDGRRARARQXXXXXXXXXXXXXXXXADDEGQEGGAERRGXXXXXXXXXXXXXXXXXXRARVRSRNAVIDGWLEEGGEEGGSREDAFVDLEDFIEA 8091
+ AM+ATML VDRLVDG++G DPGGARLYMSQ+RE+ETL+MLECFEDMLSGKLPVAPPS SS PL+ + GGSMAYRVPP+EFLKVLVEGNTTR+G LHAV+QAIGRGDLQGRAASLCISEVRMCLSACA +G + DR S +RRMPLAQLRELAG+CLSFSMD SGRPA GVYAGGRRGAEDANNRRVLML+A PAVLGAC XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G N D RR S+ + R + R GKV ++ WS GGLP+RGE +L DVTDALLDRPWPLRL LPLLV+FEEI+GL+ELL+ C R A ES GG G++SVW RVRSRLME VWMGGLDGADFTGV VCVLCDTD R+NYE + ++S L +E+ + A AAT H+ QE L +G + E RD + + S G W+SCLRQLYAAVPPEWVSTVELVLEQTLHQMPGVAESLLDAIQD S S G G S+ E STPTS+ +DLALLILLLREASPLRACSLPLLPVGVDRGRRAE+GVR LLL A+R G +G A + G ++ E R R GA+ TRALLR VLCSEP G G XXXXX SSGVVSERASQLLELALRWLEEGDGG G GDG F D +G G L+I+D+ASE +SAVFDAVVEARPRLLRALLSG++D +Q G ACAW+ MRAWEALMAQE ECRRL PHSQ VSD LG+LTLLPRGRARRVVES+LPLADVC TQASA++SLCRKCSVQGESKGRLLTLHAVTCILAWNA R +GRNGGCLDQEGMQEDLVGMFRRAFE GLQT ARADALHLLATKLAT + AG T TQY+ L A P + RA + +P PPA+D +AL+ LR FL+ RLFRF HKDEVL ADS+A GG D G P Y RRRGGRFQLVPLRLLEE A G GH FGG+++ G +G G+VRN RGRGVV RD IG LLKCCWALVPA G P T VP AH +M KRAE EAIAR +LG G RRRS GGGR + G + V TREGEALVAVV+FLQGGG METLR+ PSNQ+ +A+ DV EPPAP PP CHPGVVSPLT LGVVVTL+EAL DCLL+G SCP A + S HH P+SG + APLVLWA+AD FTLLAAATR ADGIA P GG SKQ R PE LSEII SLPAETL LSRG ELN AT G + DD + G A G R G Q SLLS SALVFV+EFLGWA E +SPAALVAEGWDGGIGVWLGL+HSVQTL+RAL+ RG + R+G GG S G + DP AEAIALA+FQLRT VGTPSAA+ V+DPSA A+ K V DERS +S S+ A G D + + SRRP PG MITGFL +MS RWK ALPWGLPS AP RR S XXXXXXX G A G +KAEAEDLFFAL+ LLR+ERLVLSILLVGP A+LA R WTMRAALASA R EN E E R P P + ++A C EEPPESGSGPAR A ++ G K G + GA VRE E GD W GLG LCRLAA EMREGLE GLSVKLS AYLDLIELLGSAALEH+ ARRT ++ A++ S + SAGAC Q D A+ GD +EDAGG LLSIVTCHTV+Q KLF RL+ GAVR DG+G+ + Q R T A LA L+ARDR++S V + C G+ + LRA+ SPP LERS+RL+VHCV+WIRARHG++RGR A+ L EEDG ESSEE V G + GL + R DG QSRYS PE+VKFASSRECF AMRTALVECET+LSS G G DV GGGGG SST G+LADVLATV+F LREFF+P + +LLLMRVLER++LVG+G +AS+ LAKPSSTATATV +AA XXXXXXXXXXXXXXX AT + GKPGDQAGGAP + PAK A G+ R +S+S SS S RQ KGA + G D A SE S G E K PE A++ +LAP+LPA ALASGD L LMLAAR WAEALR +++RGGDDPCRKRASTMLFKIERCELEIGTAA K RQFLE F++G K S AV A R G V G+T+KRARG C +GGG +AK + I CDE +E ALRLLL+GADT+AAWRRDSAAKEKSRAAR H G+R +AR+ +EG E A R RARVRSRN VIDGWLEEGGEEGG+R+DAFVDLEDFIEA
Sbjct: 4 MDAMDATMLKVDRLVDGMHGEDPGGARLYMSQIRESETLSMLECFEDMLSGKLPVAPPS--SSRCPTPLNIASGGSMAYRVPPSEFLKVLVEGNTTRVGALHAVMQAIGRGDLQGRAASLCISEVRMCLSACANMTGVANGDRGSTNPVHRRMPLAQLRELAGVCLSFSMDIHSATASGRPAPGVYAGGRRGAEDANNRRVLMLQAFPAVLGACXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKMRKGKGKSVGTNEDERRRSSVGDHVGDGLSTGVRGRSRSGKVISNGRGASGGGWSEGGLPQRGEAILWDVTDALLDRPWPLRLALPLLVMFEEIFGLVELLERRGCEARHQAQESGGGAVPGKESVWTRVRSRLMELVWMGGLDGADFTGVIRQVCVLCDTDDRRNYEHDTRHSSPPLREEVSGCDVAPGAATSHEPQERLLPKNGHSERTEMRDGVDGVRKARRGEQTRVSSRGGGWISCLRQLYAAVPPEWVSTVELVLEQTLHQMPGVAESLLDAIQDTSSSSVNTGEADYGVMT---------GAGLGSSQAEXXXXXXXXXXXXXXXXXXXSTPTSISHDLALLILLLREASPLRACSLPLLPVGVDRGRRAEEGVRSLLLHAARSGFDGRAAVISRSSGNNQMNEYRGREGALDSTRALLRAVLCSEPGCKGSGXXXXXXXXXXXXXXXXXXSGGVFRNGGESSGVVSERASQLLELALRWLEEGDGGSG--GDGSVAF--DTEGVGTELNIQDIASETISAVFDAVVEARPRLLRALLSGIYDQSQGGAACAWNYMRAWEALMAQETGRECRRLVPHSQCVSDALGQLTLLPRGRARRVVESMLPLADVCPTQASAMISLCRKCSVQGESKGRLLTLHAVTCILAWNARRGHTGRNGGCLDQEGMQEDLVGMFRRAFEGGLQTVARADALHLLATKLAT----------SVAGAITQG---TQYNRAQLLSAMPCQMPQQSHARATIHVDP-PPAIDRTALNGLRAFLSMRLFRFFAHKDEVLSADSNADGGGDNSGGPAPSGGYDADSLSRRKGKHKA----RRRRGGRFQLVPLRLLEERGASGGGHSFGGKSSRG-KGPGIVRNGRGRGVVPRDAIGQLLKCCWALVPA-GGPTGTDVPDDGAHGTIMPVPEKRAEAEAIARMLLGAGSRRRSEGGGR-ERGGRPSVGRVSVDTREGEALVAVVEFLQGGGTMETLRMVTPSNQQTPDQQEADDDVIEPPAPAPPACHPGVVSPLTTLGVVVTLAEALADCLLTGISCPRA---IHFSRKASRCEVSRVEPADGHHVGDGGDGGPTSG---KPEAPLVLWAIADVFTLLAAATRVADGIAAPLGGLSKQPQTRAPEGLSEIISSLPAETLGLSRGSELN--ATVVGVEEGDDSDSGGAMGER-GXXXXXXXXXXXXXXASGQSSLLSATSALVFVREFLGWAEKEKGKSPAALVAEGWDGGIGVWLGLVHSVQTLSRALKTTRG---NCSRDGAGGVSVGGAATQNSDPCAEAIALAVFQLRTVVGTPSAAVSVVDPSAEAS--KTTVSSDERSAGAASPSVGHG------TARGTHETDSPIMHQTSRRPPPGKMITGFLTKMSMRWKTALPWGLPSVAPPRRTSXXXXXXXXXXXXXXXGCGGHAVAGGVKAEAEDLFFALQAELLRSERLVLSILLVGPNASLAQRGWTMRAALASACPRQLAENVE-----EWRSPPPGTSAASSAATKCAPDRPRAFSRREEPPESGSGPARGAASSNGRVVRATLRKSATLAGGRNGSDAAATEQEFGGKLGRASNMGVGGRRGLVGAKGVREGGEGGDKWNGLGGLCRLAAAEMREGLETGLSVKLSHAYLDLIELLGSAALEHRSCARRTPKPNAAA------GPAETSAADRSSEQGSAGACWGQADDAMNTGDGNKEDAGGVLLSIVTCHTVSQSKLFNRLVRGAVRLDGIGISHHPQPPRRTAAASLAELRARDREIS-CVANHPDGGQGGGGAGCNGANRV-------------EGLRAVAVSPPS-LERSTRLLVHCVRWIRARHGNKRGRTAILLSEEDGSESSEEEGVXXXXXXXXXXLPDAEHASG---KGKGLSDLRARDGRQSRYSLCPEKVKFASSRECFAAMRTALVECETSLSSVG------GVDV---GGGGGASST-GNLADVLATVAFCLREFFTPG----------------------------------------------------------------------STSTRLLLMRVLERVFLVGKGALASASATLAKPSSTATATVVAVRAAPXXXXXXXXXXXXXXXKRRRQQH-----AATVENGKPGDQAGGAPCRTPAKCGGTNSTERSGGSRA-----AKDGDSGSGRRPPQSRSVSSSSGRQGKGAXXXXXRAGSDAAAAAHSELSRLGQESGMT-KAPEGALDAVLAPVLPAVALASGDCLRLMLAARTWAEALRLKSRRGGDDPCRKRASTMLFKIERCELEIGTAAHKTRQFLEHFQDGEKNS-AVKAETRSGGVRGATRKRARGGCDKDGGG----GDPAKAKKLEPGGSTTIS-CDENLESALRLLLAGADTVAAWRRDSAAKEKSRAARPTHGGKRGQARRERQQGLGPGAEH------EEGDEEEAGGRSNSVRHRFTGASGKRRRSRRARVRSRNVVIDGWLEEGGEEGGNRDDAFVDLEDFIEA 2597
BLAST of mRNA_L-elsbetiae_contig2064.6221.1 vs. uniprot
Match: A0A835YTT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT1_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.040e-30 Identity = 265/883 (30.01%), Postives = 346/883 (39.18%), Query Frame = 1
Query: 1522 WLSCLRQLYAAVPPEWVSTVELVLEQTLHQ-MPGVAESLLDAIQDASRCSXXXXXXXXXXXXXXXXXXXXXGRGTVPSREERSRCNTGP--PSWSSAGGLVRSTPTSVGNDLALLILLLREASPLRACSLPLLPVGVDRGRRAEDGVRHLLLEASRWGLEGAKASVGGKDRAPECRRRAGAVSGTRALLREVLCSEPRFTGGDGNGVREYSGRGGXXXXXXXXXXXXXXXSSGVVSERASQLLELALRWLEEGDGGEGVGGDGGAVFGNDDDGGAGLSIRDVASEIVSAVFDAVVEARPRLLRALLSGVFDMNQSGTACAWSCMRAWEALMAQEAELECRRLAPHSQGVSDTLGRLTLLPRGR----------------ARRVVESVLPLADVCSTQASALMSLCRKCSVQGESKGRLLTLHAVTCILAWNAHRAKSGRNGGC---------------------------------------------LDQEGMQEDLVGMFRRAFESGLQTAARADALHLLATKLATPSPEDVGQSAAFAGGETAAAPVTQYSVDRLRAAPSSASSRPPPRAALGREPSPPAVDLSALSDLREFLTARLFRFLVHKDEVLDADSSAAGGNDGGGNPRGVDRYXXXXXXXXXXXXXXXXXXHRRRGGRFQLVPLRLLEESVAPGMGHGFGGENNSGGRGHGVVRNVRGRGVVARDPIGHLLKCCWALVPALG--APVETAVPGGDAHERVMSARGKRAEVEAIARAVLG---TGRRRSGGGG---RLAKSGLEVCTREGEALVAVVDFLQGG------------GGMETLRVAAPSNQRAASPLDANSDVAE---PPAPPPPTCHPGVVSPLTALGVVVTLSEALVDCLLSGS 3909
WL L +Y A PP ++T+ELVLEQ LHQ G A +LL A+ D XXXXXXXXXXXXXXXXXX P +W A LL+LL R A+PLR C+LPLLP + G A D A LR++L S + G G G XXXXXXXXXXXXXXX S+RA+QL + AL+WL+ GG N G++ R V +V VF V ++RP +LR LL + D ++ A + AWEAL+A+EA+ C L PH+ V D LG LTL P ARRV+++ PLA + A+A++ L RKC Q +++GRLL LHA+T L A G G C L+ D++ + R + GL +A A L+ + A P AA V Q + RL A PPP+++ G++ RG G QLVPLRLLEE AP G GE RGH + R AR+P+GHLL C WAL G A + A GG+ R +SA+G A+ +ARAV+G + R+GG G +L ++G + AL A+V +L+GG G E AA Q +A L S A A P P C V ALGV +E L+ CLL G+
Sbjct: 397 WLQALIAVYCAAPPPALATLELVLEQALHQDSSGSARALLRAVTDDGSDGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPICHAWQRAN---------------LLLLLRRGATPLRECALPLLPPALAAGGAAAD-----------------------------------------AALRDLLFSAAAASLGSGGGSSGVEXXXXXXXXXXXXXXXXXXXXXXXXSDRAAQLFDAALKWLDVSGGGXXXXXXXXXXXXN------GVA-RTVVESVVLQVFALVPDSRPHVLRRLLGALLDRTRAA-AVREGYLGAWEALLAREAQQRCAALQPHAALVGDALGALTLQPPQATRSLPMTPPSTSILHVARRVLDACAPLAHASAPLAAAVVGLARKCLAQADARGRLLALHALTAALG-TPPEAWGGGGGPCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACVTALNNPERLHDIIELLRWGLDGGLPCGMKAAAYQRLSVRRAAPH------------AAAAALDVIQRRLLRLFAR------APPPQSSKGKK-------------------------------------------------RGA-----------------------MERGALQLVPLRLLEE-WAPREG----GERQ---RGHVLAR------CCAREPLGHLLGCAWALEVQAGGYAAGDAAAAGGN---RGVSAQGGLADALLLARAVVGGSASAAERAGGAGDELQLGEAGRQRAAHVRAAL-ALVRYLRGGALPHRVDDEDPDGSAEDAAEAAV--QGSAELLGGGSFGARGGGAAALPLPQCDARAVGTQQALGVAAMAAEGLLSCLLLGA 1104 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2064.6221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2064.6221.1 >prot_L-elsbetiae_contig2064.6221.1 ID=prot_L-elsbetiae_contig2064.6221.1|Name=mRNA_L-elsbetiae_contig2064.6221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2695bp MEATMLTVDRLVDGINGGDPGGARLYMSQLRENETLTMLECFEDMLSGKLback to top mRNA from alignment at L-elsbetiae_contig2064:8964..21295- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2064.6221.1 ID=mRNA_L-elsbetiae_contig2064.6221.1|Name=mRNA_L-elsbetiae_contig2064.6221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12332bp|location=Sequence derived from alignment at L-elsbetiae_contig2064:8964..21295- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2064:8964..21295- >mRNA_L-elsbetiae_contig2064.6221.1 ID=mRNA_L-elsbetiae_contig2064.6221.1|Name=mRNA_L-elsbetiae_contig2064.6221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=16170bp|location=Sequence derived from alignment at L-elsbetiae_contig2064:8964..21295- (Laminarionema elsbetiae ELsaHSoW15)back to top |