mRNA_L-elsbetiae_contig20621.6217.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig20621.6217.1
Unique Name	mRNA_L-elsbetiae_contig20621.6217.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5JLY7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 9.950e-49
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRL 313
            SC QL GVCLTVHE + A+ KK LHMLN MKFDRFAFMVVLINE ENEAINRKT+A LV+RVLGH+SD  KVCM EVWFCGRCFC  PL+R FDQ GRV L+ L
Sbjct:  101 SCKQLSGVCLTVHEHNHAEKKKFLHMLNAMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMVEVWFCGRCFCKNPLMRSFDQVGRVILTFL 204

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.930e-43
Identity = 78/104 (75.00%), Postives = 85/104 (81.73%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRL 313
            SC QL GVCLTVHE + AK KK LHMLNVMKFDRFAFMV LINE EN  INRKT+ + VKRVLGH+S+  KVCM EVWFCGRCFC  PL+R FDQFGRVFL+ L
Sbjct:  798 SCRQLSGVCLTVHEHNHAKKKKFLHMLNVMKFDRFAFMVGLINETENGVINRKTVGNEVKRVLGHSSERLKVCMAEVWFCGRCFCEKPLMRSFDQFGRVFLTFL 901

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.920e-40
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLS 307
            SC QL GV L  HEQ+ AK KK LHMLNVMKFDRFAFMV LINE ENEAINRK++A++VKRV GH S+  ++C  +VWFCGRCFC   L+R FDQFGRV L+
Sbjct:  370 SCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRVRLT 471

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.990e-39
Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRLST 319
            +C QL GV L  HEQ+ AK KK LHMLNVMKFDRF FMV LINE ENEA+ R+++A++VKRV GH  +  ++C  EVWFCGRCFC   L+R FDQFGRV L+ + +
Sbjct:  121 TCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFTFMVTLINETENEAMKRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFIQS 226

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.180e-38
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRLST 319
            +C QL GV L  HEQ+ AK KK LHMLNVMKFDRFAFMV LINE ENEAINR+++A++VKRV GH  +  ++C  EVWFCGRCFC   L+R FDQFGRV L+ + +
Sbjct:  461 TCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTSIQS 566

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 9.010e-38
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRLST 319
            +C QL GV L  HEQ+ AK KK LHMLNVMKFDRFAFMV LINE ENEAINR+++A++VKRV GH  +  ++C  EVWFCGRCFC   L+R FDQFGRV L+ + +
Sbjct:  750 TCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFIQS 855

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5K8T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.110e-37
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 2

Query:   77 MLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRL 313
            MLNVMKFDRFAFMVVLINE ENEAINRKT+A LV+RVLGH+SD  KVCM EVWFCGRCFC  PL+R FDQ GRV L+ L
Sbjct:    1 MLNVMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMLEVWFCGRCFCKNPLMRSFDQVGRVILTFL 79

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5JU18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU18_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.540e-36
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRLST*ADIFWK 340
            SC QL GV L  +EQ+ AK KK L  LNVMKFDRFAFMV LINE +NEAINR+++A+ VKRV GH S+  ++C  EVWF GRCFC   L+R FDQF RV  + L   +  FW+
Sbjct:  133 SCAQLSGVNLNAYEQNHAKKKKFLRTLNVMKFDRFAFMVTLINETKNEAINRESVANTVKRVRGHGSERVEICQAEVWFWGRCFCQESLVRSFDQFSRVRPTFLFIHSHTFWR 245

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.390e-28
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 2

Query:    2 SCLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHF 280
            SC QL GV L  H+Q+ AK KK +HMLN MKFDRFAFMV LINE ENEAI+RK++A++VK V GH S+  K+   +VWF GRCFC   L+R F
Sbjct:  487 SCAQLSGVNLNAHKQNHAKKKKFVHMLNDMKFDRFAFMVTLINETENEAIHRKSVANMVKLVRGHGSEQVKIFQAQVWFYGRCFCQKSLMRSF 579

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BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Match: A0A6H5JIR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.600e-23
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 2

Query:    5 CLQLKGVCLTVHEQSFAKHKKILHMLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMTEVWFCGRCFCAMPLIRHFDQFGRVFLSRL 313
            C QL GV   VHEQ+  K  K L  ++ M FD F + + LINE+EN  INRKT +  V   + H  +    C  EVW CGRCFC+ PL+R FDQFG++ ++ +
Sbjct:   73 CPQLTGVNCNVHEQNHEKKTKHLPSVSGMGFDTFTYNITLINELENVKINRKTCSVAVSSAIEHPHERLHACRKEVWTCGRCFCSKPLMRSFDQFGKLRITHM 175

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig20621.6217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5JLY7_9PHAE	9.950e-49	75.96	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKU6_9PHAE	1.930e-43	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G349_ECTSI	4.920e-40	68.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JTF9_9PHAE	2.990e-39	61.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVZ9_9PHAE	1.180e-38	64.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1E3_9PHAE	9.010e-38	64.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8T0_9PHAE	7.110e-37	79.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU18_9PHAE	6.540e-36	58.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWV2_9PHAE	2.390e-28	61.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIR9_9PHAE	2.600e-23	45.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig20621	contig	L-elsbetiae_contig20621:1175..1656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	482
Cds size	246
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig20621.6217.1	prot_L-elsbetiae_contig20621.6217.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig20621 1251..1496 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815849.4381716-UTR-L-elsbetiae_contig20621:1174..1250	1622815849.4381716-UTR-L-elsbetiae_contig20621:1174..1250	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig20621 1175..1250 +
1691683144.6644151-UTR-L-elsbetiae_contig20621:1174..1250	1691683144.6644151-UTR-L-elsbetiae_contig20621:1174..1250	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig20621 1175..1250 +
1622815849.4614663-UTR-L-elsbetiae_contig20621:1496..1656	1622815849.4614663-UTR-L-elsbetiae_contig20621:1496..1656	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig20621 1497..1656 +
1691683144.6928666-UTR-L-elsbetiae_contig20621:1496..1656	1691683144.6928666-UTR-L-elsbetiae_contig20621:1496..1656	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig20621 1497..1656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815849.4486394-CDS-L-elsbetiae_contig20621:1250..1496	1622815849.4486394-CDS-L-elsbetiae_contig20621:1250..1496	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig20621 1251..1496 +
1691683144.6823711-CDS-L-elsbetiae_contig20621:1250..1496	1691683144.6823711-CDS-L-elsbetiae_contig20621:1250..1496	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig20621 1251..1496 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig20621:1175..1656+
coding sequence from alignment at L-elsbetiae_contig20621:1175..1656+

protein sequence of mRNA_L-elsbetiae_contig20621.6217.1

>prot_L-elsbetiae_contig20621.6217.1 ID=prot_L-elsbetiae_contig20621.6217.1|Name=mRNA_L-elsbetiae_contig20621.6217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MLNVMKFDRFAFMVVLINEIENEAINRKTLASLVKRVLGHNSDVPKVCMT
EVWFCGRCFCAMPLIRHFDQFGRVFLSRLST*

mRNA from alignment at L-elsbetiae_contig20621:1175..1656+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig20621.6217.1 ID=mRNA_L-elsbetiae_contig20621.6217.1|Name=mRNA_L-elsbetiae_contig20621.6217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig20621:1175..1656+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTGCCTCCAGTTGAAGGGGGTATGTCTCACCGTGCACGAGCAAAGTT
TCGCGAAGCATAAAAAAATTCTGCACATGCTAAATGTCATGAAATTCGAC
CGCTTCGCGTTCATGGTTGTTCTCATCAACGAGATCGAGAACGAGGCGAT
CAATCGCAAAACCCTGGCGAGTTTGGTCAAGCGCGTTCTGGGTCACAACA
GTGACGTGCCGAAAGTTTGCATGACAGAAGTTTGGTTTTGCGGCCGGTGC
TTCTGCGCGATGCCTTTGATCCGACATTTTGATCAATTCGGCCGCGTGTT
TTTGTCCCGTCTATCGACATGAGCGGACATTTTTTGGAAGTTTATACTCC
CGAGTATGCCATTGGGGGTGTCGTGGATGCTTCATCTTTGCCTGGTTAGA
GGAGGAAGTACGTCATGCTCTCGCTCTGCTTTGTTCAAGGGCTGCTTTCG
GCAGATTGAGATTGTTGAGATTGTTATTCGCC

Coding sequence (CDS) from alignment at L-elsbetiae_contig20621:1175..1656+

>mRNA_L-elsbetiae_contig20621.6217.1 ID=mRNA_L-elsbetiae_contig20621.6217.1|Name=mRNA_L-elsbetiae_contig20621.6217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig20621:1175..1656+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAAATGTCATGAAATTCGACCGCTTCGCGTTCATGGTTGTTCTCAT
CAACGAGATCGAGAACGAGGCGATCAATCGCAAAACCCTGGCGAGTTTGG
TCAAGCGCGTTCTGGGTCACAACAGTGACGTGCCGAAAGTTTGCATGACA
GAAGTTTGGTTTTGCGGCCGGTGCTTCTGCGCGATGCCTTTGATCCGACA
TTTTGATCAATTCGGCCGCGTGTTTTTGTCCCGTCTATCGACATGAATGC
TAAATGTCATGAAATTCGACCGCTTCGCGTTCATGGTTGTTCTCATCAAC
GAGATCGAGAACGAGGCGATCAATCGCAAAACCCTGGCGAGTTTGGTCAA
GCGCGTTCTGGGTCACAACAGTGACGTGCCGAAAGTTTGCATGACAGAAG
TTTGGTTTTGCGGCCGGTGCTTCTGCGCGATGCCTTTGATCCGACATTTT
GATCAATTCGGCCGCGTGTTTTTGTCCCGTCTATCGACATGA