mRNA_L-elsbetiae_contig206.6211.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig206.6211.1
Unique NamemRNA_L-elsbetiae_contig206.6211.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 1.030e-101
Identity = 215/307 (70.03%), Postives = 232/307 (75.57%), Query Frame = 1 
Query:   10 RQVPTWIYFGFLFLTRKEECLGFVASPPAQHRXXXXXXXXXXXXXXXXXXXXXXRRNAPTAAAPXXXXAAKISSAAARAPARAIAAPSSSRTALHATGFGPPPPKRPRRPRASPDPSAYHPNDXXXXXXXXXXXD-----EPFPGARDAKKVREPRGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKEEASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGE 915
            R++P  + FGFL LTRKE C+GFVA+  AQ     XXXXXXXXXXXXXXXXXXX           XXX     +A   A  RAIA    SRTAL+ATGFGP                      XXXXXXXXXXX      EPFP   DAKKV EPRGIGTLFESEDE+IRELSSEEY +LLRDWAPIASFASVEAID +VKEEA+CILTVLRGMA+W+PKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSED+GVVVEWICGNPVTLGIPGNAV WL +G+ ALCGKRLDLPVTIS +ARGE
Sbjct:    5 RRIPVRLVFGFLLLTRKEGCVGFVANLAAQQHPQQXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXTATRTAAHRAIA----SRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDAGEPFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 299
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BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.800e-53
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:  634 MAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGEG 918
            MA+W+PKRN+DYTK+GSKWSFGAPIGAIKGGQVDALACL+VSED+GVVVEWICGNPVTLGIPGNAV WL +G+ ALCGKRLDLPVTIS +ARGEG
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 95
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BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 143 bits (361), Expect = 2.840e-37
Identity = 68/145 (46.90%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:  460 RGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKEEASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTI 894
            + +GTLF+SEDE IREL S+E+LD +R WAP+++F   E  +   +EE +    VL+ MA+W+P R+  Y      W FGAP+GA KGGQ+DA+ACL++SE +GVVV +I  NP+ +G+ GNA  WL +G+  +C +RL + + I
Sbjct:   67 QALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEG-NASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDI 210
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BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.750e-29
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  634 MAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGEGGDDFE 933
            M +W P R  D+ + GS W+F AP+ A K G +DA+ACL+V+E++G+ + W+C NP  LG+PGN++AWL +G++ L GKRLD+ V     ARGE  DD E
Sbjct:    1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARGELADDDE 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMS2_9PHAE1.030e-10170.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI60_ECTSI2.800e-5386.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4F895_VITBC2.840e-3746.90Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835Z8Z3_9STRA8.750e-2949.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig206contigL-elsbetiae_contig206:37324..39883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Exons3
Model size1074
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig206.6211.1prot_L-elsbetiae_contig206.6211.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig206 37324..39883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.835314-CDS-L-elsbetiae_contig206:37323..376681622815848.835314-CDS-L-elsbetiae_contig206:37323..37668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 37324..37668 -
1691683144.1942818-CDS-L-elsbetiae_contig206:37323..376681691683144.1942818-CDS-L-elsbetiae_contig206:37323..37668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 37324..37668 -
1622815848.8523595-CDS-L-elsbetiae_contig206:38340..384301622815848.8523595-CDS-L-elsbetiae_contig206:38340..38430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 38341..38430 -
1691683144.2037292-CDS-L-elsbetiae_contig206:38340..384301691683144.2037292-CDS-L-elsbetiae_contig206:38340..38430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 38341..38430 -
1622815848.86368-CDS-L-elsbetiae_contig206:39244..398831622815848.86368-CDS-L-elsbetiae_contig206:39244..39883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 39245..39883 -
1691683144.2171307-CDS-L-elsbetiae_contig206:39244..398831691683144.2171307-CDS-L-elsbetiae_contig206:39244..39883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 39245..39883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig206.6211.1

>prot_L-elsbetiae_contig206.6211.1 ID=prot_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
MVGRQVPTWIYFGFLFLTRKEECLGFVASPPAQHRYYYCNNHHAQPSSSS
SSPLIVHRRNAPTAAAPAAAPAAKISSAAARAPARAIAAPSSSRTALHAT
GFGPPPPKRPRRPRASPDPSAYHPNDGDADDGDGGGGDEPFPGARDAKKV
REPRGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKE
EASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACL
QVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISA
RARGEGGDDFEAGGGGGGGGGRVGGGGGGKNGRKADSRRNSGSSSGGRRK
GGSKKRR*
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mRNA from alignment at L-elsbetiae_contig206:37324..39883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig206.6211.1 ID=mRNA_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2560bp|location=Sequence derived from alignment at L-elsbetiae_contig206:37324..39883- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCCGACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCT
CACGAGAAAGGAGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAAC
ACCGCTACTACTACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCG
TCCTCGCCGTTGATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACC
AGCAGCAGCACCAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGG
CGAGAGCAATAGCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACG
GGTTTCGGGCCGCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCC
CGATCCCAGCGCCTACCACCCGAACGACGGGGACGCCGACGACGGCGACG
GTGGCGGCGGCGACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTG
CGAGAGCCGCGCGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGAT
CCGCGAGCTCTCGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGC
CGATCGCGTCGTTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAG
GAGGCGTCCTGCATCCTGACAGTCCTGAGAGGCATGGCGGTAAGAAACAG
AAAAAATCGATTACATGCATGATACATATGTACTTCCACTTCGGAAAGTA
TGTTGTCGTCTCGACTATGATGTGCCTAAGTTCTACCGTTGTCCCCCGGT
GGTGGAAACCCACCTCATCTCTGGTCTCAGGATGTGTGATATTTATCTAG
ATATCATTTCGGAGTCCGAGGGTATGTATGTAGGATCCCTCGACCCCCGG
TGCTTCTCGCAGACGACAACGCTCGTACTTGCTCAGCAGGGCGAAGGCTC
GATCGAGCGCAAGGCTCCGCCTCGCAGTAAGAATATATATAAGCGACGGG
GTGATTCAAGGAACGGCTATACACCGCAGCATTGTCGTGGCGGAGAGAAG
AGACGGGATCTGACCAAAACATAACATGCTTCTTGTTCCTGTCTTTGGAT
TGGATCGACCGCCTCGTCGTGGAGTGAGTGTAAAGCGGTGTGGCATCTGA
GTCGGCATTTCTGGCGAAGCCGCAACAGAGCAGAACAGCAGCAGTACACA
GCAGCCGCCAAAAAAGATCGCCTCCCTCGCTGGTTTGTGGACGGCAAGAT
GAGGGGAGGAAGGCGGCGGCCCGCAAAGCCAGCCAGTCGCTCGTGCCATA
TCTGAAACCCTCGTTGAACCCTGGGGGGCGAAGGTGGCGCTGTGTATGCA
TCCCTCGCCTGCAGCGTTTATTCAGCAAAGCGCGGCAAGCTGCTCTACTG
CTGTGTGCCTGTGCTGTGTGTGCACAGCAGGCTGGCTCTTCACGGCATGC
GGGCGCGCCTGTTGCCTTGTCCTCGTGCGCGTTCTGTCTCGCTTTTCTGA
CAGCAATGGGAGCCCAAGCGCAACGCCGACTACACCAAGCTGGGGTCGAA
GTGGTCCTTCGGGGCGCCGATCGGAGCCATCAAGGGCGGCCAGGTGGGGG
CCCTTTTCTGGTTTTGTCATTCCTCGACCACCCCGTGTGCGCCCCCTTAA
AATCTTGTGATGCGGCGTTAGCTGTTTGCACAGGACTGTCTGAAGCGGAG
GTCTGAATCCCGTGGCTGGTGAAGAGTAATGGATATTCGAAGCACGCACC
CTCGTCTTCTTTGGCACACCCGTGGGTTATACATACAATATACGTACGTC
AAGGTGTACACCCCTGCAGTAGATGCTCGATGAATCGGGCTGCATGCCCC
ATGACCGCTGCTGGTATTGCGTTTCGATTCGCTTGTCGGGGAGGGGACTT
TGAAGCAAAAACCTCAAGCCTCCGGGCGGGCGTCTTGGGCATTTCTGACT
CTCATGCGTACAAGTTTCCCTGGGTTGCTGTGTTGTCACACCGGAAATTA
AGTTTATCTAGGAAAATAACCCAAACCCTAACCCCAGCCACCGACCCCCC
TTTTCCGGTTTCCATACTTATAATTTTATCTAACGTAATATGTTAGCTGA
AGACGAAAACCCTGCATAGACTACCGGGGACACCAACCAAACAACCAACC
AACCAACCAACCAACCCCCCCCCCATCCAACGTTGCGCTCGCTTTGATCG
CGCTTTTGGATGTGTCTTCGTGCACACGTGTAAATACGCATGTGCAAATG
CCCCTTGTGCGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGA
CGAGGGCGTCGTCGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCA
TCCCCGGCAACGCCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGC
GGGAAGCGGCTCGACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGA
GGGAGGGGACGACTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGC
GAGTTGGAGGTGGAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGA
AGAAATAGCGGGAGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAA
GCGCCGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig206:37324..39883-

>mRNA_L-elsbetiae_contig206.6211.1 ID=mRNA_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig206:37324..39883- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCCGACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCT
CACGAGAAAGGAGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAAC
ACCGCTACTACTACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCG
TCCTCGCCGTTGATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACC
AGCAGCAGCACCAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGG
CGAGAGCAATAGCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACG
GGTTTCGGGCCGCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCC
CGATCCCAGCGCCTACCACCCGAACGACGGGGACGCCGACGACGGCGACG
GTGGCGGCGGCGACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTG
CGAGAGCCGCGCGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGAT
CCGCGAGCTCTCGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGC
CGATCGCGTCGTTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAG
GAGGCGTCCTGCATCCTGACAGTCCTGAGAGGCATGGCGATGGTGGGCCG
ACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCTCACGAGAAAGG
AGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAACACCGCTACTAC
TACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCGTCCTCGCCGTT
GATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACCAGCAGCAGCAC
CAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGGCGAGAGCAATA
GCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACGGGTTTCGGGCC
GCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCCCGATCCCAGCG
CCTACCACCCGAACGACGGGGACGCCGACGACGGCGACGGTGGCGGCGGC
GACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTGCGAGAGCCGCG
CGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGATCCGCGAGCTCT
CGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGCCGATCGCGTCG
TTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAGGAGGCGTCCTG
CATCCTGACAGTCCTGAGAGGCATGGCGCAATGGGAGCCCAAGCGCAACG
CCGACTACACCAAGCTGGGGTCGAAGTGGTCCTTCGGGGCGCCGATCGGA
GCCATCAAGGGCGGCCAGCAATGGGAGCCCAAGCGCAACGCCGACTACAC
CAAGCTGGGGTCGAAGTGGTCCTTCGGGGCGCCGATCGGAGCCATCAAGG
GCGGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGACGAGGGC
GTCGTCGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCATCCCCGG
CAACGCCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGCGGGAAGC
GGCTCGACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGAGGGAGGG
GACGACTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGCGAGTTGG
AGGTGGAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGAAGAAATA
GCGGGAGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAAGCGCCGA
TAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGACGAGGGCGTCGT
CGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCATCCCCGGCAACG
CCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGCGGGAAGCGGCTC
GACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGAGGGAGGGGACGA
CTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGCGAGTTGGAGGTG
GAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGAAGAAATAGCGGG
AGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAAGCGCCGATAG
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