mRNA_L-elsbetiae_contig206.6210.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig206.6210.1
Unique NamemRNA_L-elsbetiae_contig206.6210.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: D7FI51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI51_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 3.220e-146
Identity = 243/328 (74.09%), Postives = 256/328 (78.05%), Query Frame = 2 
Query:   23 MLLRFAEILALLACPLGIQGFAPSLPHLAAR------------TSALPT------HDGR---GPRSSMSMPVLAG-VSPSAASPSSPAEYFMALFGGNKGKVA-RTNGGAAWEAELLSAIEAVQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPPPAP 937
            ML      L LL  PLGIQGF PSL + AA             T+A  T      H+ R   G  S  + P  A   +P  ASP+S  EYFMALFGGNKG  A R +     EA+LLSAI+ VQGRGRDVT EQRELVDKAVEALE DGG  + ASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDID+FSE PPTVTNVVDFG RVGQLRVTALASTPSRPMEGFVPR+GDGRFFGLNILGVSQTTPPEDPS RIDFQFDEAGFD +ALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPP P P
Sbjct:    1 MLAHCTTALVLLGLPLGIQGFVPSLANNAAGANNGAATTPTPGTTAAATGCRRWQHEHRIASGSSSCRAPPAHAHRAAPRPASPASLPEYFMALFGGNKGSSATRASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPP 328
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A835Z824_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z824_9STRA)

HSP 1 Score: 267 bits (683), Expect = 3.440e-81
Identity = 132/208 (63.46%), Postives = 157/208 (75.48%), Query Frame = 2 
Query:  320 VQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIF-SEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTP---PEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSER----LRIARGNKGTLFVLQR 919
            + GRG+ V   Q+E VD  +  LE  GGV D A +  +DG WRL++T+TPGTASP+QRSFV VD F+IYQ+I ++ ++AP TV NVVDFG RVG+L V ALAST  RP++GFVPRRGDGR  GLN+ GVSQT     P  P  RIDF+FD+AGFDLK LPF IPYPVPFR+ GDEVKGWID+TYLS +    LRIARGNKGT FVL R
Sbjct:    1 MSGRGKGVEGAQKERVDSLIAELEASGGVPDGACADSIDGVWRLLYTSTPGTASPIQRSFVSVDAFSIYQNIALYGADAPATVANVVDFGARVGRLEVAALASTARRPLDGFVPRRGDGRILGLNVFGVSQTAEEGAPRRPGARIDFKFDDAGFDLKLLPFRIPYPVPFRILGDEVKGWIDITYLSRQPEGGLRIARGNKGTTFVLVR 208
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A6V1SXP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SXP2_HETAK)

HSP 1 Score: 248 bits (632), Expect = 9.030e-73
Identity = 134/259 (51.74%), Postives = 162/259 (62.55%), Query Frame = 2 
Query:  143 RGPRSSMSMPVLAGVSPSAASPSSPAEYFMALFGGNKGKVARTNGGAAWEAELLSAIEAVQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 919
            +GP++S  +  L G   S  SP+S       L+G  K               LL  + A+  RG        E V + V  LE   G+ D A  P ++G WRL+ TTTPGTASP+QRSFVG   F+++QDID+     PTV NVV+FG  +G L V ALAST +RP+ GFVPRRGDG+  GLNI GVS T PP +P  RIDF+FD A FD   LPF IPYPVPFR  GDEV GWID+TYLSE LRIARGNKGT F+LQ+
Sbjct:   23 KGPKASAGLKRLGG---SVCSPNS----LHMLWGNTKKATKXXXXXXXXXXXLLETLAALTRRGAGADAAAAERVAEQVAVLERTQGIPDPADYPGLNGRWRLLHTTTPGTASPIQRSFVGAAAFSVFQDIDLARPDRPTVANVVEFGS-LGVLTVEALASTAARPLPGFVPRRGDGKILGLNIFGVSSTEPPANPKQRIDFKFDYAAFDFNFLPFAIPYPVPFRYLGDEVTGWIDITYLSESLRIARGNKGTTFILQK 273
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A4D9CNY0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNY0_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.220e-70
Identity = 119/216 (55.09%), Postives = 152/216 (70.37%), Query Frame = 2 
Query:  290 EAELLSAIEAVQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIF----SEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPED--PSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 919
            E  LL AI+ +  R    + + +  V   ++ LE   G+    ++  ++G WRL++T++  TASP+Q +FVG   FA+YQDIDI     S AP TVTN+VDFG  +G L V ALASTP+RP+  F PR GDGRFFGLNILG+S+T  P D  P  RIDF+FD AGFDL  LPF IPYPVPFRL  DEVKGW++VTYLS RLR++RGNKGT+FVL++
Sbjct:   63 ENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQDIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPARPIPNFAPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEK 278
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A5B8MHL9_9CHLO (Plastid lipid-associated fibrillin n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHL9_9CHLO)

HSP 1 Score: 240 bits (613), Expect = 2.230e-68
Identity = 122/220 (55.45%), Postives = 152/220 (69.09%), Query Frame = 2 
Query:  263 ARTNGGAAWEAELLSAI-EAVQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 919
            A T+G    E  L  A+ E    R   + PE + ++D+ V  LEE+GGV D  +S L++G W+L+FTT PGT+SP+QR+F G++ F+IYQDID+     P V NVV FGD VG L+V A A T  RP  GFVPRRG G    L  LG S +TPP  P+ RIDFQF +A FDLKALPFNIPYPVPF+L  DE KGW+D TYLS  LR++RGNKGTLF+L+R
Sbjct:   10 ASTSGKPVAEKRLREALFEGSTRRDDSIGPELKRVIDECVAKLEEEGGVRDPTASDLINGRWKLLFTTRPGTSSPIQRAFTGIETFSIYQDIDL-EGLQPKVDNVVVFGDSVGVLKVEAEAVTDKRPRAGFVPRRGQG----LPFLGKSDSTPPSGPNKRIDFQFSKAAFDLKALPFNIPYPVPFKLLQDESKGWLDTTYLSNDLRLSRGNKGTLFILER 224
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A5J4YBD5_9CHLO (Putative plastid-lipid-associated chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBD5_9CHLO)

HSP 1 Score: 241 bits (615), Expect = 3.260e-68
Identity = 122/214 (57.01%), Postives = 152/214 (71.03%), Query Frame = 2 
Query:  299 LLSAIEAVQGRGRD-VTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQRPPPP 931
            LL AI  V+GRG+  ++PEQ   ++ AVE+LE D GVSD   SPL++G WRL+FTT PG+ASP+Q++FVGVD F +YQD+ + S     V N+VDFG +VG L+V A AST S    GFVPR+  G    L + G S  TPP  P+ R+DFQFD+A F   ALPF IPYPVPF+L GDE KGWIDVTYLS+  +LR+ RGNKGTLFVL + P P
Sbjct:   67 LLGAITDVKGRGKSGMSPEQLSKLEAAVESLEADRGVSDPTKSPLLEGRWRLLFTTRPGSASPIQKTFVGVDAFTVYQDVLLSSAEKVRVNNIVDFGAKVGTLKVEAEASTDSNTRPGFVPRQKPG----LAVFGKSSNTPPVHPNMRVDFQFDKAAFAFSALPFKIPYPVPFKLLGDETKGWIDVTYLSQDGKLRLTRGNKGTLFVLLKDPSP 276
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A2P6VFQ7_9CHLO (Putative plastid-lipid-associated chloroplastic isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ7_9CHLO)

HSP 1 Score: 240 bits (613), Expect = 8.920e-68
Identity = 125/211 (59.24%), Postives = 149/211 (70.62%), Query Frame = 2 
Query:  299 LLSAIEAVQGRGRD-VTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPT-VTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 919
            LL  I  V+GRG+  +TPEQ+   D+AV  LE DGGV    +SPL+DG W L+FT+ PGTASP+QR+F  VD  ++YQDI++  E     V+ VVDFG  VG LRV A A+T SRP+ GF PR G G  FG  I+G S T PP  P  R+ FQFD A F LKALPF IPYPVPF+L GDE KGWIDVTYLS   RLR++RGNKGTLFVLQ+
Sbjct:   79 LLGVIAGVEGRGKGGLTPEQQAAFDEAVAILEADGGVEAPTTSPLLDGRWALLFTSRPGTASPIQRTFTAVDSVSVYQDIEVGDECEQARVSQVVDFGSAVGFLRVEAEANTDSRPLPGFTPRVGQGLPFG--IMGKSSTGPPARPDMRVGFQFDRAAFTLKALPFKIPYPVPFKLLGDERKGWIDVTYLSPDGRLRLSRGNKGTLFVLQK 287
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A2P6TS10_CHLSO (Putative plastid-lipid-associated chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS10_CHLSO)

HSP 1 Score: 249 bits (636), Expect = 3.500e-66
Identity = 128/210 (60.95%), Postives = 149/210 (70.95%), Query Frame = 2 
Query:  299 LLSAIEAVQGRGRD-VTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 919
            +L AI  VQGRG+  +TPEQ+   D AV  LE DGG++    SPL+DG WRL+FTT PGT+SP+QR+F  VD F IYQDID+  E P  V  VVDFG  VG LRV A AST SRP+ GF PRRG+G  FG  I+G S + PP  P  R+DFQFD A F   ALPF +PYPVPFRL GDE KGWIDVTYLS   +LR+ RGNKGTLFVL +
Sbjct:  853 VLDAIADVQGRGKGGMTPEQQAAFDAAVAVLEADGGMAAPTDSPLLDGRWRLLFTTRPGTSSPIQRTFTAVDSFKIYQDIDLAGEQP-RVCQVVDFGKNVGYLRVEAEASTDSRPLAGFTPRRGEGLPFG--IMGRSSSEPPARPGLRVDFQFDRAAFTFNALPFKVPYPVPFRLLGDEAKGWIDVTYLSPDGKLRLTRGNKGTLFVLAK 1059
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BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A0D2MM87_9CHLO (Putative plastid-lipid-associated protein 12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM87_9CHLO)

HSP 1 Score: 231 bits (590), Expect = 9.220e-65
Identity = 120/231 (51.95%), Postives = 159/231 (68.83%), Query Frame = 2 
Query:  266 RTNGG--AAWEAELLSAIEAVQGRGRD-VTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVK------GWIDVTYLSE--RLRIARGNKGTLFVLQRPP 925
            RT  G  A  E  +L A+ + +GRG++ ++ E  + +  A+  LE+DGGV+D  +   +DG WRL++T+ PG+ASP+QR+F GV+ F IYQ++D+ S+ P  V NVVDFG+ +G L V A AST SRP+EGF PR G+G  FG  ILG S  TPP  P+ RIDFQFD+A F  K LPF+IPYPVPFR+ GDE K      GWID TY+++    R+ARGNKGTLFVL + P
Sbjct:   15 RTKAGSRATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDLSSDLP-RVNNVVDFGEEIGYLIVQAKASTESRPLEGFTPRVGEGLPFG--ILGKSFNTPPARPNSRIDFQFDQAAFHFKFLPFSIPYPVPFRILGDERKARPPSPGWIDTTYMNQDGTFRLARGNKGTLFVLVKAP 242
[Close]
BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Match: A0A7S1WYS5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYS5_9CHLO)

HSP 1 Score: 230 bits (587), Expect = 3.660e-64
Identity = 112/211 (53.08%), Postives = 150/211 (71.09%), Query Frame = 2 
Query:  290 EAELLSAIEAVQGRGRD-VTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVTALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEAGFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVL 913
            EAE+L  +++ +GRG+D ++ EQ+E +  A+  LEEDGG+    +SPL+DG W+L++T+ PG++SP+QR+F  VD F ++Q++ +       + N VDFG++VG LRV A A+T +RP+ GFVPRRG G    L  LG S T PP  P+ RIDFQFD A F+   LPF IPYPVPFRL GDE KGWIDVTY+S+    RI+RGNKGT FVL
Sbjct:   67 EAEVLDILQSARGRGKDGLSSEQQEALAAAIYVLEEDGGLKAPTASPLIDGQWKLLYTSRPGSSSPIQRTFTAVDAFTVFQEVYLRQSDKARINNCVDFGEQVGILRVEAEANTDTRPIPGFVPRRGAG----LPFLGKSSTYPPSRPNQRIDFQFDRAAFNFYRLPFQIPYPVPFRLVGDEGKGWIDVTYMSKDGEFRISRGNKGTTFVL 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig206.6210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI51_ECTSI3.220e-14674.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z824_9STRA3.440e-8163.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1SXP2_HETAK9.030e-7351.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CNY0_9STRA2.220e-7055.09Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5B8MHL9_9CHLO2.230e-6855.45Plastid lipid-associated fibrillin n=1 Tax=Chlorop... [more]
A0A5J4YBD5_9CHLO3.260e-6857.01Putative plastid-lipid-associated chloroplastic-li... [more]
A0A2P6VFQ7_9CHLO8.920e-6859.24Putative plastid-lipid-associated chloroplastic is... [more]
A0A2P6TS10_CHLSO3.500e-6660.95Putative plastid-lipid-associated chloroplastic n=... [more]
A0A0D2MM87_9CHLO9.220e-6551.95Putative plastid-lipid-associated protein 12 n=1 T... [more]
A0A7S1WYS5_9CHLO3.660e-6453.08Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig206contigL-elsbetiae_contig206:31120..37371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue3.1e-122
Seed eggNOG ortholog2880.D7FI51
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CN7K@1,2QUCQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-10_003560.1
Exons6
Model size2312
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig206.6210.1prot_L-elsbetiae_contig206.6210.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig206 31133..36014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.726241-UTR-L-elsbetiae_contig206:31119..311321622815848.726241-UTR-L-elsbetiae_contig206:31119..31132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig206 31120..31132 +
1691683144.1086566-UTR-L-elsbetiae_contig206:31119..311321691683144.1086566-UTR-L-elsbetiae_contig206:31119..31132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig206 31120..31132 +
1622815848.8037004-UTR-L-elsbetiae_contig206:36014..373711622815848.8037004-UTR-L-elsbetiae_contig206:36014..37371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig206 36015..37371 +
1691683144.185618-UTR-L-elsbetiae_contig206:36014..373711691683144.185618-UTR-L-elsbetiae_contig206:36014..37371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig206 36015..37371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.7385998-CDS-L-elsbetiae_contig206:31132..311981622815848.7385998-CDS-L-elsbetiae_contig206:31132..31198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 31133..31198 +
1691683144.1220002-CDS-L-elsbetiae_contig206:31132..311981691683144.1220002-CDS-L-elsbetiae_contig206:31132..31198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 31133..31198 +
1622815848.7489219-CDS-L-elsbetiae_contig206:31401..316581622815848.7489219-CDS-L-elsbetiae_contig206:31401..31658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 31402..31658 +
1691683144.1366158-CDS-L-elsbetiae_contig206:31401..316581691683144.1366158-CDS-L-elsbetiae_contig206:31401..31658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 31402..31658 +
1622815848.7603943-CDS-L-elsbetiae_contig206:33890..341041622815848.7603943-CDS-L-elsbetiae_contig206:33890..34104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 33891..34104 +
1691683144.1474652-CDS-L-elsbetiae_contig206:33890..341041691683144.1474652-CDS-L-elsbetiae_contig206:33890..34104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 33891..34104 +
1622815848.7712288-CDS-L-elsbetiae_contig206:34519..346931622815848.7712288-CDS-L-elsbetiae_contig206:34519..34693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 34520..34693 +
1691683144.1576197-CDS-L-elsbetiae_contig206:34519..346931691683144.1576197-CDS-L-elsbetiae_contig206:34519..34693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 34520..34693 +
1622815848.7804792-CDS-L-elsbetiae_contig206:35181..352891622815848.7804792-CDS-L-elsbetiae_contig206:35181..35289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 35182..35289 +
1691683144.1693647-CDS-L-elsbetiae_contig206:35181..352891691683144.1693647-CDS-L-elsbetiae_contig206:35181..35289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 35182..35289 +
1622815848.7915745-CDS-L-elsbetiae_contig206:35891..360141622815848.7915745-CDS-L-elsbetiae_contig206:35891..36014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 35892..36014 +
1691683144.1777024-CDS-L-elsbetiae_contig206:35891..360141691683144.1777024-CDS-L-elsbetiae_contig206:35891..36014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig206 35892..36014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig206.6210.1

>prot_L-elsbetiae_contig206.6210.1 ID=prot_L-elsbetiae_contig206.6210.1|Name=mRNA_L-elsbetiae_contig206.6210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MPSMLLRFAEILALLACPLGIQGFAPSLPHLAARTSALPTHDGRGPRSSM
SMPVLAGVSPSAASPSSPAEYFMALFGGNKGKVARTNGGAAWEAELLSAI
EAVQGRGRDVTPEQRELVDKAVEALEEDGGVSDRASSPLVDGSWRLIFTT
TPGTASPVQRSFVGVDGFAIYQDIDIFSEAPPTVTNVVDFGDRVGQLRVT
ALASTPSRPMEGFVPRRGDGRFFGLNILGVSQTTPPEDPSGRIDFQFDEA
GFDLKALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVL
QRPPPPAPASSSP*
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mRNA from alignment at L-elsbetiae_contig206:31120..37371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig206.6210.1 ID=mRNA_L-elsbetiae_contig206.6210.1|Name=mRNA_L-elsbetiae_contig206.6210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6252bp|location=Sequence derived from alignment at L-elsbetiae_contig206:31120..37371+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGTACCGTCATGCCATCAATGTTGCTGCGCTTTGCGGAAATCCTGG
CATTGCTAGCATGCCCACTAGGAATACAGGTATTTCCTACGCACGATATC
TAGCGTACATACGTACATACCTACGCTTTGCAACGCACCGCCGGCCCAGG
AGACTACTTACTACTGTAGTGCCACCGCCTAGACACCCAGCAGTACACAG
CAGTAGTCTATGTAGTCAACTTCGCCAACAGCAGTGCTCCTCTCGTAATC
ATTATGTGTGTGTGTGTGTGTGTGTGCCCTAGGGGTTCGCACCCTCCCTC
CCGCATCTCGCGGCGCGGACAAGCGCTCTGCCAACACATGATGGAAGAGG
ACCACGTTCTTCGATGTCGATGCCGGTGCTGGCCGGGGTATCGCCATCGG
CGGCATCACCATCCTCTCCCGCTGAGTACTTTATGGCTCTGTTCGGCGGT
AACAAGGGGAAAGTGGCGAGAACGAACGGCGGAGCAGCGTGGGAGGCGGA
GCTGTTGTCGGCGATCGAAGCGGTTCAGGGGAGGGGAAGGTGTGTGTGTG
GGAGGACCTGCTTGTGTTGTCAGATAGATGACCGAATACATACGTTGCCA
CCAATATGTACGTATGTAGGTATACACTGGAAGTTTAGGTGGGACCATAC
ACAAGCAACTTCGTGCGCACGGTCCTGAGTTAACGCGACAAAATGCCGAA
ACAACAATGATCAGCAAGAGGCCGGCGCGGTTGTAGGTACAGAACGCGCC
ACCACTTGAGGCTCGTTGGGCGAGGCTCGTTGGGCGAGGCTCGTTGCTTA
ACCCTTTTAGTACTGGAAGCGCGTTTGGCGACGATTTGGCTACACCCTTT
GGTCACTGTTTTATGACTTTGGGGTGCACGGGCGGTCTTGGTATCCCGTA
CAAAGGCCTGGGAGTACCCTGCCGAGTTGTACACTTTACCTACCATATCT
GGCCTCCTCACAGCTCCACAGCCGTGCTGTGGACACAACGGAGTTGTCGT
AGATATCTTAAAATCAGGAAAAAATCAACGTGTCCGCGATTCCAAACTCT
GTTACTTTCCGCGGCGCCCTCAGCGATTTGAGCCAAGGGGGCTCACGGAG
GGCACACAGGGATGCACTGCCCCAAACCTGGAATTGGTAAAATTGAGATG
GAGGGGGGGTGGTATATGACGTATATTGCTGCTATTATATAGGTTTTAGT
ACAGGCAGCGCGTAGACGGGCAAGAAAGCGGCAGAATCCACCCAGGGAAG
CACACACTTAGCAGAGTAACCCACAATTGGAGCCATAAGCTATCAGCGTG
AGCTCCCCTAGGCATGGAGAATGGCCAGGGTTTGCGTCGTGTAGCTGCAC
CTCTTGAACCAAGGAATTCGTGCTAATTGATTGCGACTCTAGGTTTGGCA
CTCTGCTGCCGTTCGCTCCCACCGAAATGATATACATGTAGTCTAGAGTA
ATTACATGTGACATATTTGATGATCTTTTTGTATGTATGCAGCAGAGGCA
CTGCGGCAGCATTTGTTTTCGCGGGAGAAAAAAACTTACTTGCTGGTTTA
TTTGACAATGTTCTAATACTTAGGTATATATCTATGATAGCATATGCCAA
CACCATCAATGCCAACACCATCAACACTGACATTTTTGTTTCTAGATAGT
GTCTAGTCTTCTTCTTAAAAACTCGTCGCTCCCGCTTATTTGTTTTTCCT
GCTGCTCCGTCGGAGTAGGTAATTGCGTGTGCGGCGATCAGCTTCACATG
GTTGCACCTTGTCCAGCAAATATAACACAATAATAACCTGTAACAGGCAG
AGAGTCTTTTTCGATGGCCTCGTCGGTCGCAAGTTGTTCCTAGAACCCGT
CTCAGCACATAACGGGCCCTACTGACCAAAGCTGGAAACTGGCAAAAAAT
GAGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGAACGCCACCCGGGCTGGC
CCACCGGGGGGGTAGCAGTGCATCCCTGTGTGCCCTCCGTGAGCCCTCTT
GTTTGAGCCTTCGAGCTGACAGCACGCACACATAGCTTCGCTCTAACTCT
CGAGAACCACCGCATGCTGAGCCTAGAGCGGGTTGCTTCGCTCGCCACGC
TGCATTACGCGTTGTGAGGGCTGCTGCGCGTGCACAGCCCAGGGTTCATC
TTATGTCTCTGAGACAAACACATCTGTATTGTCTGGTACGCCAAGACAAA
TACATCTGTATTGTCTGGTACGCCAAAAAAGTTCGACTTGGATTGAGCAT
TGAAAGTGTCGCTAAACGTCTAACAGAGTTTGACTGCTATTTAGTATAGG
AAGTGTCGCCAAATTGGTGTGGGGCCCTGCAGCTGGTCTTTGCAGGTGTC
TTGCGCAGGGACTGTCCTTCTCGACCAATCAGCGGGCATCTAGAACAGTT
CGATAATTTTGGTCCGATAACTTTGGTTCTCAGGGACCTCCCGTACTAAA
AGGGTTAATGATCATTCTTTTTAATCACCAAAACCCGCTTGAAGTCCCAG
AAGGGTTAAGGGTTAAGTGCCAAGTTCTTTAGCGGTGGCGCGTTCTGTAG
AAAAGAGTGCTTCCGAGATGTCGGCTTTTTCATTTGCGCCGTACATGATG
GATGCCCCCAAGAAGAGGCCAAACCGTCCAGCTGTTACGGTATAACTCAC
TCTCCGTTTAACACTCACCGCGCTTGCACGAGGCCAAACCGTCCACCGGT
CTGGCAGCTGCTACGGCATGGCTCACTCTCCGTTTAACACTCACGCCGCC
GCGCTTGCACGAACACGCCAGGGACGTTACCCCGGAGCAGCGGGAGCTAG
TAGACAAGGCTGTAGAGGCCCTGGAGGAAGACGGAGGCGTATCGGACAGG
GCCTCGAGCCCCCTCGTGGACGGTAGCTGGAGGTTGATCTTCACGACCAC
GCCCGGAACGGCGTCGCCGGTGCAGCGATCGTTTGTCGGGGTGGACGGGT
TCGCCATCTACCAGGACATCGATATATTCTCTGAGGTGGAGGATTTTAAG
ACGCACAAGTATGATATCCGTTGGGTACATGCATAGCTCAGAACTCCGGT
TGGCGCCTGCCTAACGAACATGCTCCGGCTATTTATGTAGCAGATGCATC
TCCCGAGGGAGACAATCTTCGAAAGTGTCAGGAAGCCTCGCAACCCCCAC
AGCCCTCCCCCCCCCCCCCTCCGCCTCACTCTCTCTTCTCTACCCTCTGT
GTACTCGCTACCTGCTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTG
CCTGCCTGCCTGCCTGCCTGCTTGCCTTCTGTCTGTGTGTCCGTCTGTCT
GTCTGTCTATCCGTTTCTCTCTCTCTCTCCGTCTTGGTTTTTCTCTCTCG
CGGCCCGCCGCCCGCCGCCCGCCGCCCGCCGCCCGCCCCGCCCACTACAG
GCGCCTCCGACGGTAACCAACGTGGTGGACTTCGGCGATCGGGTGGGGCA
GCTCCGGGTGACCGCTCTCGCGAGCACCCCTTCCAGGCCCATGGAGGGCT
TCGTGCCAAGGAGGGGCGACGGGAGATTTTTCGGTCTCAATATTCTCGGG
GTTAGTCAAACCACGCCTCCAGAGGTGAGTCGTAAAATAATAGCACGCTC
TGTTGAAGCGAAGCCACCACGCCGATCGCCCCGGTCATCGACCGCCCCGA
TGTGGTACATGCTACGCACACCCGCCCTTCTTGTCCCCACGACTCCCTCT
CCGTCCGTCCAATTTCTATGTAGGACTGCAACAGACAGCTGCATAAATAA
TGTGTCGTGGGGTTTCCGTGAGGGCGCTTGGAAATGTGTTTGAAGAGCGC
GCGAGCGAGCGAGCGAGAGAGAGAGGCGGGGGGGGAGAGACGGATGACAA
GACTGGGTGTCGCTTTTGTTTCAAGTTTTCTCTCGAGGGGTGTGTCCCGT
TGTCCTTCGTCGTGTTCTTCTCATTCCTTCTTGTTTTGTGCCGGAAACCC
CTGCTTCCCGCTTTGACGGCCGTTACGGCGAAACGTTTCACGCCGCTTGT
TTCCGGGCTTGGCGACTGACGCCGGCCGGTGCCATTGCCCGGTGCCGGTG
CCCGTGCCGCAGGACCCGAGCGGGCGTATCGACTTCCAGTTCGACGAGGC
CGGCTTCGACCTCAAGGCGCTGCCCTTCAACATCCCGTACCCGGTGCCGT
TTCGACTGTTCGGGGACGAGGTGTGGCTGGCCGTCTGTTCTTGCCTCTTG
CATATAGAAGTGTTCTTCTTGTGTGTGTCGTCGACGTTTGTTTGTGGTCC
ATGAACTTTTCGCTTTTGTATCGCCACCGAGAGCGGCGTTCAGACCTGCT
GTAAGGGTAGGCCACCACCGCCCGTGGGCCGGCGAAGTCGTTTGTCATGA
GGTTGTTTCTCTCTCTATTTTTCTCTCCATTCTTTTTGCGACATGAAGAC
GTGGCCGGTCGTGTGCTGCCGGAGAGCTGATTGTGTAGCCGCTGCTCGTG
TTTGTTTTCTTGATTGGCATCGACCGCGCTAATCGGTTGACCAATGCGAA
GACGCCAGCCTTTAGCGGGCAAGTCTGCGTATGTGTGTCTGTGTGTGTGC
GAACGCTGGCAGAGCCCAGTGCTAAATACTTCTACTTTTCAGCTTGGGGC
AACGACATCTATGCGGTGTTGATGCTTGTGTGTTATTGCTGTTGAGCCGT
GGTCTCGTGTTTGTGCTGCGGGCTGCCTCCCTGCCTTACGTCTTCTCGTC
CGTGTTTTGTCCTTCTCCATATTTTTTTGTTTGTTTTTCGCGACCGTCAA
CCACCGCCGTCAAAACCGCCAGGTGAAGGGCTGGATAGACGTCACCTACC
TTTCTGAACGCCTGCGGATAGCCCGGGGCAACAAGGGCACGCTGTTCGTG
CTCCAACGACCGCCACCGCCCGCGCCAGCGTCTTCGTCGCCGTGAACAAC
GTGCTCGTCGGAACCGCGACGCTACGCGTCACACCGTCTCCGACCGCCCC
TTCTGCGCCTGGACGCTCCCATGCATGATGGGCTGTGTCTTCGGGCCTAC
CCCGTCTATTTAAGCTCACAATTTCTGATGTTGTCCGCGTACTCGGGACG
CTATTTATTCACACCGCGGTTGCTCTTCCGGTGTCCCGACTCTTGTAACG
TTGTCGTGGAGAATGAGAGGCGTGGTACAAACAAACAAACGATGGATGTA
TGTACTGGTGAGGGTAGTACGTAGATGAGCCGGGATTTTCCTTCCGTGCA
CCAGCCGCGTGTTGGAGGGCTGGGGTTTCACCTGTGCGTCTCAAAACATA
CTCACGAGGGTATCGCGGGGGAGGGGAGGAAGCGAGCGAGGGACTGGGGG
GTTCTCGGTGCCTCCACGTGGTTACGTCTGTAAATAGCTCTGATATTCTC
CAGTACGGAGATACGGTCTTGCTTGCTTGTGGCCGGGTTCACGGTCTTGC
TTGCGCGCCGGTTCATTTTGACACCGGGTTCTGCAGGAGTGTTTAGGTTT
GTCGAGTATCGGGGATTGGGTTCGCCTGGAGCACGAAAAGTAGATGGAAT
GCTTGACAAAACCAAGGCTACGGGACATAAGTACATACATATTTAAGTGT
TTTTGTTTCAAGTGGCGGTGGTGGTTGGTACTTGGTGTTCTCATGTACGC
CGGGGGCTGTCTGGGGCGCTTGGTGATCCCGAGTTTTGCGCGTCTTCCCC
CCCCAATACCAAACGGAAGCACAGGTAGCTTGCAACACGGGGGCACGCGA
TATGAACTTCGCTTTATTTCTCCCATCCCCACCCCCGCCCCCGTGAGGAA
TCAAAGTCAAGGCGGGGTGTTCCTTGCAGAACTACATACGATTATCATGG
AGTGAATTCTAAAGTACTCTTGAAACGCGAACTGAAGGGCGTTCACTGTC
CGACAAGCTCATATGTATCTTCTCTCCATGTGAGCGCGCGCCACCAAAAC
AAGCTTATTTCGTCCTTCCCGTCACCGCCGCCGCTGCTATTGCTGCTGCT
GCCGCCGCCACTGCCATCTCTCCAGAACAAAATTAAATCAACACTCTCGC
CGACAATAATAAAAGTAAGAACTCTTTTCCGCGGCTGAGGAGTGTCCTCT
CTGGGTGATGTTGATCGTTTGTCACCGTTCTTCTTTTCTCTCTTGACGCA
ATCCTCCTCCTTCGCCCCTTCCTTCCCCGCACCACCCTGCGCTCTATGTA
CGCTCCAAACGAGACAAACGCTTCACAAAATATTTATGTTTACGTGAACG
CAGGCTATCGGCGCTTCTTCGAGCCGCCCTTCCTCCTGCCACCGCTGCTA
CT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig206:31120..37371+

>mRNA_L-elsbetiae_contig206.6210.1 ID=mRNA_L-elsbetiae_contig206.6210.1|Name=mRNA_L-elsbetiae_contig206.6210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig206:31120..37371+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAATGTTGCTGCGCTTTGCGGAAATCCTGGCATTGCTAGCATG
CCCACTAGGAATACAGATGCCATCAATGTTGCTGCGCTTTGCGGAAATCC
TGGCATTGCTAGCATGCCCACTAGGAATACAGGGGTTCGCACCCTCCCTC
CCGCATCTCGCGGCGCGGACAAGCGCTCTGCCAACACATGATGGAAGAGG
ACCACGTTCTTCGATGTCGATGCCGGTGCTGGCCGGGGTATCGCCATCGG
CGGCATCACCATCCTCTCCCGCTGAGTACTTTATGGCTCTGTTCGGCGGT
AACAAGGGGAAAGTGGCGAGAACGAACGGCGGAGCAGCGTGGGAGGCGGA
GCTGTTGTCGGCGATCGAAGCGGTTCAGGGGAGGGGAAGGGGTTCGCACC
CTCCCTCCCGCATCTCGCGGCGCGGACAAGCGCTCTGCCAACACATGATG
GAAGAGGACCACGTTCTTCGATGTCGATGCCGGTGCTGGCCGGGGTATCG
CCATCGGCGGCATCACCATCCTCTCCCGCTGAGTACTTTATGGCTCTGTT
CGGCGGTAACAAGGGGAAAGTGGCGAGAACGAACGGCGGAGCAGCGTGGG
AGGCGGAGCTGTTGTCGGCGATCGAAGCGGTTCAGGGGAGGGGAAGGGAC
GTTACCCCGGAGCAGCGGGAGCTAGTAGACAAGGCTGTAGAGGCCCTGGA
GGAAGACGGAGGCGTATCGGACAGGGCCTCGAGCCCCCTCGTGGACGGTA
GCTGGAGGTTGATCTTCACGACCACGCCCGGAACGGCGTCGCCGGTGCAG
CGATCGTTTGTCGGGGTGGACGGGTTCGCCATCTACCAGGACATCGATAT
ATTCTCTGAGGGACGTTACCCCGGAGCAGCGGGAGCTAGTAGACAAGGCT
GTAGAGGCCCTGGAGGAAGACGGAGGCGTATCGGACAGGGCCTCGAGCCC
CCTCGTGGACGGTAGCTGGAGGTTGATCTTCACGACCACGCCCGGAACGG
CGTCGCCGGTGCAGCGATCGTTTGTCGGGGTGGACGGGTTCGCCATCTAC
CAGGACATCGATATATTCTCTGAGGCGCCTCCGACGGTAACCAACGTGGT
GGACTTCGGCGATCGGGTGGGGCAGCTCCGGGTGACCGCTCTCGCGAGCA
CCCCTTCCAGGCCCATGGAGGGCTTCGTGCCAAGGAGGGGCGACGGGAGA
TTTTTCGGTCTCAATATTCTCGGGGTTAGTCAAACCACGCCTCCAGAGGC
GCCTCCGACGGTAACCAACGTGGTGGACTTCGGCGATCGGGTGGGGCAGC
TCCGGGTGACCGCTCTCGCGAGCACCCCTTCCAGGCCCATGGAGGGCTTC
GTGCCAAGGAGGGGCGACGGGAGATTTTTCGGTCTCAATATTCTCGGGGT
TAGTCAAACCACGCCTCCAGAGGACCCGAGCGGGCGTATCGACTTCCAGT
TCGACGAGGCCGGCTTCGACCTCAAGGCGCTGCCCTTCAACATCCCGTAC
CCGGTGCCGTTTCGACTGTTCGGGGACGAGGACCCGAGCGGGCGTATCGA
CTTCCAGTTCGACGAGGCCGGCTTCGACCTCAAGGCGCTGCCCTTCAACA
TCCCGTACCCGGTGCCGTTTCGACTGTTCGGGGACGAGGTGAAGGGCTGG
ATAGACGTCACCTACCTTTCTGAACGCCTGCGGATAGCCCGGGGCAACAA
GGGCACGCTGTTCGTGCTCCAACGACCGCCACCGCCCGCGCCAGCGTCTT
CGTCGCCGTGAGTGAAGGGCTGGATAGACGTCACCTACCTTTCTGAACGC
CTGCGGATAGCCCGGGGCAACAAGGGCACGCTGTTCGTGCTCCAACGACC
GCCACCGCCCGCGCCAGCGTCTTCGTCGCCGTGA
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