mRNA_L-elsbetiae_contig206.6209.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig206.6209.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI) HSP 1 Score: 642 bits (1657), Expect = 1.320e-215 Identity = 515/759 (67.85%), Postives = 547/759 (72.07%), Query Frame = 1 Query: 304 GDERRDRWRRFGAELNVELEITTEAVASAGTPFVSEEPSLWRDYEGRENARDRGVLARSNRTVSLGPDAKEPMPTG-ELVYALDVEVQVPVEFLGQTVALEALVSPAAGRERET----GAAKSPSSGNAXXXXXXXXXXXXXXXXX-----------RGVGGDFANRLDSLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSSXXXXXXXXXXXXXXXXXXXXXXXXPVGAGGGSNFAGAIGRCLVALEVRNDHPIASVTVHDVEIHVDATARCGERASSQGFSAPGKAGGXXXXXXXXXXXXXXXXRGVGRRKMSGGVP-------KGGVSAPLEGLDGSIEQPLLAGGGXXXXXXXXXXXXXXAPATGSFSRVFCASWMAKPALPLLLAPGEVQGFVLSVSPAGEPLPPRRAGGKFESPVTFVWTLDADGGGTAPGGKNSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGFPRLPPSRLPXXXXXXXXXXXXXSVHLAQWQSEQRARDEVLVRVKGQPRVKLNCVFEVFLRVRNLSDSARDLVIMFTEDPLGGRXXXXXXXXXXRQDLSLEGITDRSXXXXXXXXXXXXXXXXXXXXXXXXXGGAVKDISPSPSPAHDGPGPSFTGSSGDPAYARAGGPGSSRXXXXXXXXXXXXXXXXXXXALAAAPTSLLGDLLPVDAAVPLGRLERGAEHSATVRLTAARAGLARLSSLCLRDALTGSVYAPACPYEVFVE 2511 G++RR RWR+FG+ELNVELEITTEAVASAGT F+SEEPSLWRDYEGRENARDRGVLARSNRTVSL P+A P+ +G ELVYALD+EVQVPV+ LGQ V LEALVSP +GR E G A +PS + XXXXXXXXX RG+GG+FA RLD LFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPS+ XXXXXXXXXXXX G FAGAIGRCLVALEVRNDHP A++TVHDVE+HVDATARCG+R+SS+GFSAPGKAGGXXXXXXXXXXXX GRRKMSGGVP GLDGSIEQP LAG G APATGSFSRVF ASW+AKP LPL LAPGEVQGFV+S+SPAGEPLPPRRAGG FESPVTFVWTL A GG A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G PRL P+ SVHLAQWQSEQRARDEVLVRVKGQPRVKLN VFEV L+VRNLSDSARDLV+MFTEDP G Q LSL+G XXXXXXXXXXXXXXXXXXXX GGAVKDISPS SP H G F+ + XXXXXXXXXXXXXXXXXXX PT LLGDLLPVDAAVPLGRLERGAEH ATVRLTAARAGLARLSSLCLRDALTGSVY P+CPYEVFVE Sbjct: 20 GEDRRSRWRQFGSELNVELEITTEAVASAGTAFLSEEPSLWRDYEGRENARDRGVLARSNRTVSLSPEAPPPLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTPGVAAAPSKDTSGASCGAGGXXXXXXXXXXXXXXXXXXRRRGIGGNFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSTSSXXXXXXXXXXXX----------------GGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAGGXXXXXXXXXXXXS------GRRKMSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGG--------APATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTL-AKGG--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTPMTSASPSAGLRLPRLRPAAA----------TPTTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSE---HQYLSLDG--------GXXXXXXXXXXXXXXXXXXXXDGGAVKDISPSASPGHHVRGAGFSRTRSPXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVE 718
BLAST of mRNA_L-elsbetiae_contig206.6209.1 vs. uniprot
Match: A0A6H5JVH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH6_9PHAE) HSP 1 Score: 364 bits (934), Expect = 8.040e-113 Identity = 245/406 (60.34%), Postives = 268/406 (66.01%), Query Frame = 1 Query: 1 MDLKSAWALGEFRDAPLELRLLEHSRNTGPAAVAHGGAARDDSGIPHPQQQQHSRPMGTDAYAAAXXXG------------GRRRSLSIRSAYQGERLSGLLVVKFDAGDGERGDERRDRWRRFGAELNVELEITTEAVASAGTPFVSEEPSLWRDYEGRENARDRGVLARSNRTVSLGPDAKEPMPTGELVYALDVEVQVPVEFLGQTVALEALVSPAAGRERET----GAAKSPSSGNAXXXXXXXXXXXXXXXXX-----------RGVGGDFANRLDSLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSSXXXXXXXXXXXXXXXXXXXXXXXXPVGAGGGSNFAGAIGRCLVALEVRNDHPIASVTVHDVEIHVDATARCGERASSQGFSAPGKAG 1137 MD KS WALGEFRD P+ELR+LEH R G XXX G R L +AYQGERL+GLLVVKFD + G++RR RWR+FG ELNVELEITTEAVASAGT F+SEEPSLWRDYEGREN RDRGVLARSNRTVSL P+ + ELVYALD+EVQVPV+ LGQ V LEALVSP +GR E G A PS + XXXXXXXXXXX RG+GGDFA RLD LFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCP + XXXXXXXXX GA FAGAIGRCLVALEVRNDHP A++TVHDVE+HVDATARCG+R+SS+GFSAPGKAG Sbjct: 1 MDPKSEWALGEFRDPPIELRILEH-RVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGRVLPAWTAYQGERLTGLLVVKFDVASAD-GEDRRSRWRQFGTELNVELEITTEAVASAGTAFLSEEPSLWRDYEGRENTRDRGVLARSNRTVSLSPEGSQLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTRGVAAGPSRDTSGASSGAXXXXXXXXXXXXXXXXXXXGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPFTSSPAAXXXXXXXXX------------GA-----FAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 387
BLAST of mRNA_L-elsbetiae_contig206.6209.1 vs. uniprot
Match: A0A6H5JW59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE) HSP 1 Score: 319 bits (817), Expect = 6.380e-96 Identity = 296/434 (68.20%), Postives = 307/434 (70.74%), Query Frame = 1 Query: 1210 MSGGVPKGGVSAPLEGLDGSIEQPLLAGGGXXXXXXXXXXXXXXAPATGSFSRVFCASWMAKPALPLLLAPGEVQGFVLSVSPAGEPLPPRRAGGKFESPVTFVWTLDADGGGTAPGGKNSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGFPRLPPSRLPXXXXXXXXXXXXXSVHLAQWQSEQRARDEVLVRVKGQPRVKLNCVFEVFLRVRNLSDSARDLVIMFTEDPLGGRXXXXXXXXXXRQDLSLEGITDRSXXXXXXXXXXXXXXXXXXXXXXXXXGGAVKDISPSPSPAHDGPGPSFTGSSGDPAYARAGGPGSSRXXXXXXXXXXXXXXXXXXXALAAAPTSLLGDLLPVDAAVPLGRLERGAEHSATVRLTAARAGLARLSSLCLRDALTGSVYAPACPYEVFVE 2511 MSGGVP GG APLEGLDGSIEQP L G APATGSF RVF ASW+AKP LPL LAPGEVQGFV+S+SPAGEPLPPRRAGG ESPVTFVWTL GK GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S L P+ SV+LAQWQSEQRARDEVLVRVKGQP+VKLN VFEV L+VRNLSDSARDLV+MFTEDP Q LSL+G XXXXXXXXXXXXXXXXXXX GAVKDISPS SP H G F + XXXXXXXXXXXXXXXXXXX APT LLGDLLPVDAAVPLGRLERGAEH ATVRLTAARAGLARLSSLCLRDALTGSVYAP+CPYEVFVE Sbjct: 1 MSGGVPVGGAFAPLEGLDGSIEQPPLVGASSLGGGG--------APATGSFLRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHLESPVTFVWTL----------GKG-GAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTSASPSAGLRPT--------VSAATPTTSVYLAQWQSEQRARDEVLVRVKGQPKVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPA---QDSRRRRDSEHQTLSLDGXXXXXXXXXXXXXXXXXXXXXXXX-------GAVKDISPSASPGHHNRGAGFGRTRXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXAPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSCPYEVFVE 392 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig206.6209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig206.6209.1 >prot_L-elsbetiae_contig206.6209.1 ID=prot_L-elsbetiae_contig206.6209.1|Name=mRNA_L-elsbetiae_contig206.6209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=839bp MDLKSAWALGEFRDAPLELRLLEHSRNTGPAAVAHGGAARDDSGIPHPQQback to top mRNA from alignment at L-elsbetiae_contig206:19149..30717- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig206.6209.1 ID=mRNA_L-elsbetiae_contig206.6209.1|Name=mRNA_L-elsbetiae_contig206.6209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11569bp|location=Sequence derived from alignment at L-elsbetiae_contig206:19149..30717- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig206:19149..30717- >mRNA_L-elsbetiae_contig206.6209.1 ID=mRNA_L-elsbetiae_contig206.6209.1|Name=mRNA_L-elsbetiae_contig206.6209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5034bp|location=Sequence derived from alignment at L-elsbetiae_contig206:19149..30717- (Laminarionema elsbetiae ELsaHSoW15)back to top |