prot_L-elsbetiae_contig10652.620.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10652.620.1
Unique Nameprot_L-elsbetiae_contig10652.620.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length614
Homology
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BLAST of mRNA_L-elsbetiae_contig10652.620.1 vs. uniprot
Match: D8LQV0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.010e-30
Identity = 115/282 (40.78%), Postives = 142/282 (50.35%), Query Frame = 0 
Query:   41 RAFSAASKAKEKNSRRFWPAEVFSS-----------PSSTADRRLGNNSXXXXXXXXXXXXXXXXXXXXXXDGTLEAAGGGKGPGVATRHTPRRPPA--ARTLLAQRAAGEGPRAWHGRQGDARPTEVSIASNRSNHGRTVIAGREAATYPGG-------RKTAGQMAALLRALEATNRTATGXXXXXXXXXXXMGAAPGA--ANARMFDRTLRGYEDAGKWKQALGLLSRLTKSDDPSLGAPPHRVRPDASAYGIVVSTCARAGRWREAADLVLREMPARG 300
            R+FS ASKA+EKNSRRFWPAE FS            PSST++RR  N                                       +T   PRR  A  A+ LL +RA      A   R+ D R   +  AS R N   +++    A  Y G        +KTAGQMAALLR L ATN+               +GA+  A   N RMFD+TLRGYE+AGKW+ ALGLLSR+  SDD S       VRPD+S +G+VVS C +AGRWREA+++VLREM   G
Sbjct:   24 RSFSMASKAREKNSRRFWPAERFSERRHDIRRPEVLPSSTSNRRTENIR-------------------------------------STLVLPRRKAAVAAKFLLLRRAGDGDGGANDARRRDRRDKLLREASRRGNG--SLVPASPAIEYAGREERSTERKKTAGQMAALLRVLAATNQAVPA-----------VGASSPARVTNMRMFDKTLRGYEEAGKWRHALGLLSRMM-SDDSS------GVRPDSSTFGMVVSACVKAGRWREASNVVLREMSTHG 248
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BLAST of mRNA_L-elsbetiae_contig10652.620.1 vs. uniprot
Match: A0A813JFK4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JFK4_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 4.300e-5
Identity = 24/76 (31.58%), Postives = 44/76 (57.89%), Query Frame = 0 
Query:  325 LALMEGMAHAGLTPTVAMYNNAITLCGGGWRARVAMELLERMTEAPGVAPNLASINSVMSACQQAGEWQQTLGLLR 400
            L+++  M   G+ PT   Y   +++C  G R ++A  LLE + ++P + PN+ + N+ +SAC+   EW   + +LR
Sbjct:  250 LSILPEMRGEGVEPTTVTYARLMSVCRAGKRCKIAFSLLEELLQSPTLQPNVIAFNAAISACESCAEWALAIQILR 325
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10652.620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQV0_ECTSI2.010e-3040.78PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A813JFK4_POLGL4.300e-531.58Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 487..518
e-value: 0.0021
score: 16.1
coord: 271..301
e-value: 0.0014
score: 16.7
coord: 522..554
e-value: 1.5E-4
score: 19.7
coord: 307..339
e-value: 2.7E-5
score: 22.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 292..352
e-value: 1.4E-4
score: 21.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 460..481
e-value: 0.73
score: 10.2
coord: 491..516
e-value: 0.034
score: 14.4
coord: 557..581
e-value: 0.8
score: 10.1
coord: 522..550
e-value: 0.094
score: 13.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 519..553
score: 9.273
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..369
score: 5.744
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 449..483
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 268..303
score: 10.194
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 7.048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 554..588
score: 7.388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 589..614
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..338
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 484..518
score: 8.736
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 6.851
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 291..425
e-value: 1.1E-24
score: 89.6
coord: 189..290
e-value: 7.0E-7
score: 31.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 456..614
e-value: 1.5E-34
score: 121.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 434..612
coord: 222..402
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..614
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10652contigL-elsbetiae_contig10652:3282..5597 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10652.620.1mRNA_L-elsbetiae_contig10652.620.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10652 1069..5597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10652.620.1 ID=prot_L-elsbetiae_contig10652.620.1|Name=mRNA_L-elsbetiae_contig10652.620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=614bp
MSFLKAASSAATATAAARAHARPAMAEAATTTAAAAAAPGRAFSAASKAK
EKNSRRFWPAEVFSSPSSTADRRLGNNSSGAGPGNSSSSSSSSSMHRKSS
DGTLEAAGGGKGPGVATRHTPRRPPAARTLLAQRAAGEGPRAWHGRQGDA
RPTEVSIASNRSNHGRTVIAGREAATYPGGRKTAGQMAALLRALEATNRT
ATGGGGTAAAAAAAMGAAPGAANARMFDRTLRGYEDAGKWKQALGLLSRL
TKSDDPSLGAPPHRVRPDASAYGIVVSTCARAGRWREAADLVLREMPARG
AAADAATYGAAMDACGRRGRWEEVLALMEGMAHAGLTPTVAMYNNAITLC
GGGWRARVAMELLERMTEAPGVAPNLASINSVMSACQQAGEWQQTLGLLR
RLQAAAAAAAAAAAAAPSSPSSSPVGTQQERQPALSLLKDMSGMEIPETA
GSFSLAITKSGHKGNWEEAVELLRAMASVGIPPSRKCYHGAIAACGGSKR
HEEALELLREMPGAGFPLTDKSYRCAISACGNAGRFGECVSLLREARAAG
LPPSAGSYSLVIMACGDAGVLRQALSLLEEAEALDIVSDGACYNAAVKAC
KDCGKPEEAAAVLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf