mRNA_L-elsbetiae_contig2058.6203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 624 bits (1610), Expect = 7.050e-218 Identity = 361/454 (79.52%), Postives = 389/454 (85.68%), Query Frame = 1 Query: 313 LNLNVFGWGAXXXXXXXXXXXXXXXAKQDMEDAEAREEMRKAREERLERELEESGAAEEGEVKVEVLEGGPDKTGGGILVAMAKAGEPLRQVFSDGDKRLWLDVLEGFCGGVSLAIASLYPLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQIELETYVANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNAGVVGEYLCKPFIAFLGLLNAGLNRFQATTISYFS 1674 +NL+VFGWG AKQ+ EDAEAR+ +RKAREERLERELEESGAAEE E G DKT GGILV+MAK EP+RQV DKRLWLDV+E F VSLAI+SLYPLWHTLRGMFGLSLLF+GEDFATLAFHIVVFR+SGWKKAAKSK+ELVAYYKKAR+ M KAAKDVRASAAIIARKDRXXXXXXXXXXXXXXX SAEEA AFIDKYR +IE IAREQEVLAETSSSILAIK GALS KKLA+SVNSLYAAVITSITASTFKRAGQLTLA+TCGGL+KR LFDLLGP+IDPIGYQIELETYVANIMRGPANLYITLAGY+ SA VFFHF+VDPQQAL ITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMP+SA+IY+ L+SLGF FHGNAG+VG++ CKPFIAFLGLLN GLN FQATTI+YFS Sbjct: 1 MNLSVFGWGGDNEAKRK--------AKQEAEDAEARDALRKAREERLERELEESGAAEEAENV------GDDKTAGGILVSMAKPAEPVRQVALLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXHAIGRVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIK-----GALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPISAVIYLLLASLGFIFHGNAGLVGDFACKPFIAFLGLLNKGLNHFQATTITYFS 435
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: A0A835YUQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ5_9STRA) HSP 1 Score: 242 bits (617), Expect = 1.590e-69 Identity = 141/377 (37.40%), Postives = 229/377 (60.74%), Query Frame = 1 Query: 544 ILVAMAKAGEPLRQVFSDGDKRLWLDVLEGFCGGVSLAIASLYPLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQIELETYVANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNAGVVGEYLCKPFIAFLGLLNAGLNRFQATTISYFS 1674 + +A++ + L +G + LWLD E + +AI++L P+W ++ +FG+S+LF+G +F T+AFHI++FR+SG+K K +LV++YKKAR+A AA+ + +A++ +AEEA FI ++RQEI IA +Q+ LA SSSI+A++ A+ K L++++ LYAA++TS+TASTFK AG+ T+A+ CG ++KR + LLGP IDP+ Y+ EL T + +IM GPA T AG +A + FY DP+ AL ++ LG+ VV Y+ L+P+ RF + ++L P+SA++++ L+++G+ +H +AG E++C P I L NA LN+F + + YF+ Sbjct: 25 LQLALSARMKELTFARDNGSRLLWLDWAEVL---LPVAISALTPVWRLVKLLFGISILFYGSNFQTIAFHIIIFRISGYKSVIKHCRDLVSHYKKARKATALAARHTLSLNESLAQQKLRREEREHMLRDRQEMLRDGRITAEEARQFITRHRQEIRAIAAQQDQLAAASSSIMALRT-----AIPWKALSTTLRDLYAALVTSVTASTFKAAGRFTMALYCGDVLKRDVIALLGPCIDPLSYEAELCTDLESIMMGPAAARATFAGVAATAALLTMFYRDPEWALQLSLCFLGSSVVIGYLEMVLDPLARRFKV-RQLSRSPLSAILHLLLTAVGWRYHCHAGATKEFVCLPLIKVLEWGNAFLNKFNMSAVQYFN 392
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: A0A835Z8D7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D7_9STRA) HSP 1 Score: 175 bits (444), Expect = 5.840e-45 Identity = 124/367 (33.79%), Postives = 190/367 (51.77%), Query Frame = 1 Query: 673 PLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQI-ELETYVANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNAGVVGEYLCKPFIAFLGLLNAGLNRFQATTISYFS*RCETRPLHV**GTSTYQALVDWCASAVWLTH 1770 PLW + +FGLS+LF+G +F TLA HI++FR+SG+K + EL ++Y K R A AAK+ ++ +A+K + +AEEA AFI K+R+E+E +A +QE L T SS++A+++ A+ K + ++ LY A I SITASTF+ AG+ T+AM CG ++ + LLGP IDP+ YQ+ E++ V +IM GP+ G +A++ FY +P AL ++ LG+ VV Y+ + + P R G+ + + ++ + +G+ FH + LC PFI L N LN F + Y E V G QA A+A L H Sbjct: 44 PLWRVTKLLFGLSILFYGLNFKTLALHIIIFRISGYKDVMQHMGELQSHYTKVRAATEAAAKNTKSLNESLAQKAKRREAREKMLVDRQQMLKDGRITAEEAQAFIAKHREELEIMAAQQEQLQATGSSLVALRS-----AIRWKAVGKTLRKLYEATIASITASTFEAAGRFTMAMYCGDALRDDMRTLLGPSIDPLAYQVAEVKGNVESIMMGPSAARAAFFGLAATAVLLVMFYEEPNWALKVSLCYLGSGVVVGYLKSVVCPFAERAGVRLRPRYW---VLAHLLIMGVGWRFHLANCPLLRALCLPFIHALEAGNTLLNSFSMSAAHYLHREQELVAHAVADGAHAIQA-----AAAARLHH 397
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 168 bits (425), Expect = 9.840e-41 Identity = 125/366 (34.15%), Postives = 186/366 (50.82%), Query Frame = 1 Query: 538 GGILVAMAKAGEPLRQVFSDGDKRLWLDVLEGFCGGVSLAIASL-YPLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRT-----LFDLLGPIIDPIGYQIELETYV----------ANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNAGVVGE 1587 GGI A+A A + + + RL +D +E + + ++ P++H R FGLSLLF+G F T AFH++VFR++G K+ ++ ELV Y AR ++ +AAK + + D S E F+ KYR E+ I EQE+ SS+L++++S + ++ SS N +Y A+I S TAST + AGQ TL + G L+K + + DL GPIIDPIGY+++L Y AN M GP N+ + + Y ++VF F V P AL ++ V GARVVTDY+V P R + G + + P SA+I+ L+ LG+ H N E Sbjct: 182 GGIRPAIAAAVQSVDAGGTPRKNRLMIDYVEDALVTMWSHMVNVGVPVFHLGRFGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGNYANARRSIREAAKAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSKRETIYFMKKYRAELLRIKEEQELFQSARSSVLSLRSS-----VGPRQARSSFNGVYNALIASFTASTIQTAGQFTLGLHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCY---SVVFIVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMT-IVHTPWSAVIHAGLTILGYCCHRNVLYTAE 538
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.170e-39 Identity = 111/315 (35.24%), Postives = 163/315 (51.75%), Query Frame = 1 Query: 673 PLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQIELETYV----------ANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNAGVVGE 1587 P+ H R FGLSLLF+G F T AFH++VFR++G K+ ++ ELV Y AR ++ +AA+ + + D S + F+ KYR E+ I EQE+ SS+L++++S + ++ SS N +Y A+I TAST + AGQ TL + G L+K + DL GPIIDPIGY+++L Y AN M GP N+ + + Y ++VF F V P AL ++ V G RVVTDY+V P R + G + + P SA+I+ L+ LG+ H +A E Sbjct: 26 PVLHLGRLGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSIREAAEAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSS-----VGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCY---SVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEPARRKLGQMT-IVHTPWSAVIHAGLTILGYYCHRSALYTAE 331
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 160 bits (404), Expect = 1.430e-39 Identity = 136/390 (34.87%), Postives = 201/390 (51.54%), Query Frame = 1 Query: 607 RLWLDVLEGFCGGVSLAIASL-YPLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAK-----DVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIENIAREQEVLAETSSSILAIKASCSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQIELETYV----------ANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNA----------------GVVGEYLCKPFIAFLGLLNAGLNRFQATTISYFS*R 1680 R++LD +E G + + + P H R FGLSLLF+G F T AFH++VFR+SG+K+ S +L A Y+KAR+++ +AA XXXXXXXXXXX + E+ F+ KY +E+ I +EQ + +SS++++K+S + SS+ LY+ +ITS TAST++ AGQ+ L + G L+K L DL GP++DPIGY+++L TY N M GP NL + + Y ALVF P AL V GARVVTDY+V P+R + G+ + P S MI L+ LGF +H + GVVG L +P + ++ L+R + T+++ + R Sbjct: 5 RIFLDNVEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSSGKLAAKYRKARQSIREAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRLLAHGRKLTKEDTRKFMKKYHKELTTIKQEQAAINSINSSMISVKSS-----VDPDNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCY---ALVFAVIRAHPPLALKTAMVYFGARVVTDYLVMTAEPIRRKLGLMTAVHT-PWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVG--LVEPLVRVAVWVSEVLHRIEFFTVNFVASR 383
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.330e-23 Identity = 74/212 (34.91%), Postives = 112/212 (52.83%), Query Frame = 1 Query: 1117 SSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQIELETYV----------ANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGN----AGVVGEY----------LCKPFIAFLGLLNAGLNRFQATTISYFS*R 1680 SS+ LY +ITS TAST++ AGQ+ L + G L+K L DL GP++DPIGY+++L TY AN M GP NL + + Y ALVF P +L + + GARVVTDY+V P+R + G+ + P S +I L+ LGF++H + A V G + L +P + ++ L+R + T+++ + R Sbjct: 41 SSLRGLYNGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCY---ALVFVVIRAHPPLSLKMAMIYFGARVVTDYLVMVAEPIRRKLGLMTAVHT-PWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLVRVAVWVSEVLHRIEFFTVNFVASR 248
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Match: A0A835Z464_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z464_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.550e-13 Identity = 102/438 (23.29%), Postives = 170/438 (38.81%), Query Frame = 1 Query: 607 RLWLDVLEGFCGGVSLAIASLYPLWHTLRGMFGLSLLFHGEDFATLAFHIVVFRLSGWKKAAKSKNELVAYYKKAREAMGKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXXXXXXXSAEEAXAFIDKYRQEIEN-------------------------------IAREQEVLAETSSSILAIKAS----------------------------------------------------------------CSCGALSMKKLASSVNSLYAAVITSITASTFKRAGQLTLAMTCGGLVKRTLFDLLGPIIDPIGYQI------ELETYVANIMRGPANLYITLAGYLGSALVFFHFYVDPQQALVITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPVSAMIYITLSSLGFAFHGNA-------GVVGEYLC 1596 +L+L+ +EG V +A P++ +L+ +FGLS+LF G F +LA HI++F++ G+KK + LVA+Y++ R A AA+ R + +EA AF+ K+ +A + T SSI A+ + C C + + + + S YAAV TS+ ++ FK A ++ LA+ CG +V+ + LL P IDP ++ ELE + IM GPA L G S + F+ +P+ AL++ VLLG+R+V ++I + + R G + L + A++++ L +LG+ +H +A G GE C Sbjct: 64 KLFLEHVEGAVNAVVPVVA---PVFFSLKALFGLSILFFGMTFKSLALHIILFQIVGFKKVVMHWHHLVAHYRRVRAATLHAARSARRTLKEREDTGARVREQEAMLRDRKAMLADGRLDVDEARAFMAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAEKDAAQGATKSSIAALYYAIPWHEIWVSFCDLYAVLATSVASTAFKSAARVQLAIYCGXXXXXXXXXXXXXXVGWHRAIDLQLCICPYFNCEVGRNGLPSTYAAVATSVASTAFKSAARVQLAIYCGKVVREDVLALLAPYIDPRVSEVLEDEDDELEEQLQVIMNGPAAAKAALVGAAASVGLTALFFKEPEWALMLALVLLGSRIVAEFISRMVVWLVVRNGKAHWLRKSQL-ALLHMFLGTLGWFYHEDAVQRIYSTGWYGEVCC 497 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2058.6203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2058.6203.1 >prot_L-elsbetiae_contig2058.6203.1 ID=prot_L-elsbetiae_contig2058.6203.1|Name=mRNA_L-elsbetiae_contig2058.6203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=426bp MEDAEAREEMRKAREERLERELEESGAAEEGEVKVEVLEGGPDKTGGGILback to top mRNA from alignment at L-elsbetiae_contig2058:56..7700- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2058.6203.1 ID=mRNA_L-elsbetiae_contig2058.6203.1|Name=mRNA_L-elsbetiae_contig2058.6203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7645bp|location=Sequence derived from alignment at L-elsbetiae_contig2058:56..7700- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2058:56..7700- >mRNA_L-elsbetiae_contig2058.6203.1 ID=mRNA_L-elsbetiae_contig2058.6203.1|Name=mRNA_L-elsbetiae_contig2058.6203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2556bp|location=Sequence derived from alignment at L-elsbetiae_contig2058:56..7700- (Laminarionema elsbetiae ELsaHSoW15)back to top |