mRNA_L-elsbetiae_contig205.6178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig205.6178.1
Unique NamemRNA_L-elsbetiae_contig205.6178.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig205.6178.1 vs. uniprot
Match: D7G251_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 8.440e-81
Identity = 142/172 (82.56%), Postives = 143/172 (83.14%), Query Frame = 2 
Query:    2 SAPETRRSATARAPSLMRNSMGPGRVDSVMESRAASPTTPEVSPPVEDQVTAAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 517
            S P TRR  TA        S    R  S  ES AA  + P  SP VEDQ T AQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA
Sbjct:   13 STPVTRRLVTAEVSPPEATSTERERAGSPTESPAARESAP--SPVVEDQATIAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 182
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BLAST of mRNA_L-elsbetiae_contig205.6178.1 vs. uniprot
Match: A0A6H5JPJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.900e-42
Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 2 
Query:  170 KQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDY--GGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 517
            +++ H+D +VA FN VMLADGLKVLK   RS K A SRVIRFVPDY  GG+LVW KP+   GAK SRVPLD  TQVELEA IVWISA DERVG ETSK EDA++MY+AICILVDRC+A
Sbjct:  227 REKVHDDHVVAVFNRVMLADGLKVLKQ-LRSCKAACSRVIRFVPDYLFGGSLVWHKPVNPQGAKNSRVPLDVTTQVELEACIVWISASDERVGCETSKLEDAEIMYEAICILVDRCNA 343
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig205.6178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G251_ECTSI8.440e-8182.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPJ4_9PHAE2.900e-4271.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig205contigL-elsbetiae_contig205:43169..47369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1945
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig205.6178.1prot_L-elsbetiae_contig205.6178.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig205 43218..45944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.7076867-UTR-L-elsbetiae_contig205:43168..432171622815845.7076867-UTR-L-elsbetiae_contig205:43168..43217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 43169..43217 +
1691683142.0468807-UTR-L-elsbetiae_contig205:43168..432171691683142.0468807-UTR-L-elsbetiae_contig205:43168..43217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 43169..43217 +
1622815845.7596674-UTR-L-elsbetiae_contig205:45944..473691622815845.7596674-UTR-L-elsbetiae_contig205:45944..47369Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 45945..47369 +
1691683142.1084437-UTR-L-elsbetiae_contig205:45944..473691691683142.1084437-UTR-L-elsbetiae_contig205:45944..47369Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 45945..47369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.7197652-CDS-L-elsbetiae_contig205:43217..432761622815845.7197652-CDS-L-elsbetiae_contig205:43217..43276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 43218..43276 +
1691683142.0644362-CDS-L-elsbetiae_contig205:43217..432761691683142.0644362-CDS-L-elsbetiae_contig205:43217..43276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 43218..43276 +
1622815845.730218-CDS-L-elsbetiae_contig205:44300..444061622815845.730218-CDS-L-elsbetiae_contig205:44300..44406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 44301..44406 +
1691683142.0752053-CDS-L-elsbetiae_contig205:44300..444061691683142.0752053-CDS-L-elsbetiae_contig205:44300..44406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 44301..44406 +
1622815845.739699-CDS-L-elsbetiae_contig205:44901..450871622815845.739699-CDS-L-elsbetiae_contig205:44901..45087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 44902..45087 +
1691683142.084208-CDS-L-elsbetiae_contig205:44901..450871691683142.084208-CDS-L-elsbetiae_contig205:44901..45087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 44902..45087 +
1622815845.7498758-CDS-L-elsbetiae_contig205:45824..459441622815845.7498758-CDS-L-elsbetiae_contig205:45824..45944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 45825..45944 +
1691683142.0975301-CDS-L-elsbetiae_contig205:45824..459441691683142.0975301-CDS-L-elsbetiae_contig205:45824..45944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 45825..45944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig205.6178.1

>prot_L-elsbetiae_contig205.6178.1 ID=prot_L-elsbetiae_contig205.6178.1|Name=mRNA_L-elsbetiae_contig205.6178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MRNSMGPGRVDSVMESRAASPTTPEVSPPVEDQVTAAQRAKQEAHNDRIV
ATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPG
AKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICIL
VDRCHA*
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mRNA from alignment at L-elsbetiae_contig205:43169..47369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig205.6178.1 ID=mRNA_L-elsbetiae_contig205.6178.1|Name=mRNA_L-elsbetiae_contig205.6178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4201bp|location=Sequence derived from alignment at L-elsbetiae_contig205:43169..47369+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCCCCGGAGACGAGACGCTCGGCGACAGCGAGAGCGCCGTCTCTCA
TGAGGAATTCGATGGGACCGGGGAGAGTGGATTCGGTGATGGAAAGCCGG
GCAGCGAGGTGAGGGAGGGAGGGAGGGCTGTTGTGAACCCTTGTTGGTGC
TAGCTGCCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAGTTGCGGTCTT
GTCCCGTTATTTTGGTCACCACTGCAACCAACACTTCTAAGTATTTGTTG
TGTACGGGGGCATACATACATACCTACGCAGTACTAGATCTGTCACCACA
CCCTGCCTTTCTGCTGACCAGCAATAGTTCGTAGCGCCCAAAAGCTTTTT
TTCTATTTCATGCCGTGCGGGCTATACGCATGACGAAAAACATCTAGGTT
TTGCGGCTCGAACTCGTGGTGGTGGTATCGGTGTTGCCGGCTTCGAATTT
TAACTCATGACCCCCCCTTCCCTTCCCGCTCGTCGCGTGGGCGATTGCCT
GTCGCTGCTGACGCACTGACAATATCTCCCTTGCGTTCGGTTTGTGCGGC
GATCCCCCCTCTCCTTCTTCTCCCGGGCCATCTCCGTTGCTCGAACGCGT
GGCGCCTTTTCAGAGGTGAGTTGGTTTCCACGGCACACTGACCAGCGCGC
GCGCGCGAACACGCACACATTCGAAACCCTGTGAGTCGATATTTACATAC
GGAGTAGTTAATCGGTAGGTTCATAGCGGAGTGAGGAATAAGAGTGGGGA
TATATCCGCCGTGCCCCCGTGTGTACTTTCCAGGGGCATTGCCTTCGATA
TAGACTGGGCACGGACATGAATGATGTGAGCAGCTTTTCGCATCGTGATG
TGTGTCGTGCTCGTTCTCGGAAACGCTGTTATCTTGTTGTAGTTTTAGAA
CATCTCGCCCCGGAGCCCCCCCCAACACACACACACACACACGCGCGCGC
GCACTGGCTTAGCTGAAATAACTCAGCAAGACTGTTGTCACGTTGCATAG
TTTTTGAAAACCTTTTTCGTCTTTCCCCCTCCCCTCGCTTTCGCCTCCTT
GCTTTCTCCCACGTGTCTTTTGGTTTTTCCTCTTGTATCTTTGATGTGCA
TACTCTCTCTCTCTTTTCTTCTTTTTTATAAGCCCGACGACCCCTGAGGT
CTCGCCGCCGGTGGAAGACCAAGTGACGGCCGCTCAACGCGCCAAGCAGG
AAGCGCACAATGACCGCATCGTGGCCACGTTCAACAGCGTAAGTTTTTTT
TTTTAATGTTTGTTTACTTTTTATTAATTCTTGACACCGGCCAGTCCTCT
CCACCCCACCCGCGTTTCTGGCGAATTAACGCTTCAAGAAGCTGCTGTTT
GATTGGTGTTTTTATCGATACTTCTTATGCAGCGGAATCTCACGGCGTGA
TGGCGCGCAGCAGCTTGCGGCTCGTTTTATCTCCGAAAGTAATCGGCGTC
GACAATTACACAACTTTTTTGCCTCCTGACACCGCGTGTTGACAATGCAC
ACACAGCGAGCCAGTCGTTTCACTCTTGGTATGCAGGCCGTTCGGGTGCC
GCAGCACCGCCAACACAACGCCTGCAAACACACGCGGCAAACCATACCCT
ACACAGATTATGATCATGTGCACACGCTTGCGTCATAGATATTTTCGCCC
GCATTGCATGTAACTCTATCTCTCTATCTCTTCTCTGTTTCTCCGGTGCG
CCGACGGAAAACACACTGCCGGTGGCATCACAGGTTATGCTCGCCGACGG
CCTCAAGGTCCTGAAGCACCACCGGCGTAGCTCCAAGAAGGCGGCAAGCC
GCGTGATCCGCTTCGTGCCCGACTACGGAGGGGCTCTGGTGTGGGACAAG
CCTCTGCGCCAGCCCGGCGCCAAGGCCAGCCGGGTCCCGCTTGACGCCAT
CACCCAGGTCGAGCTGGAGGTGAGATGAGCGATTGCGCAAACGACGAACG
CACGTGCCTTAAAATTGTTCCTGTCTGATATCGCCTGCCGTGTCTCTCTC
GTTTCACCTTCATCTGTGCTGTCTCGCGCGTCCTCGCCGACTCTTGTCTT
AGGGTGGTTCCTCCCCGACCTTTGTTGAAAGTACCTCCCCAACCTTGTTG
GAAGTACGCCCGGCTTTTTTTTCTGTCCGATACCTTGCGTTTTTACAACT
CATTTCCAGCTGCTTTTTTTTTCGCGCCTTGCTTGTGTCGTCTAGCGTCT
GCCTGCCTGCCTGCCCGCTTTGTATGCGCAACGCCGTGGCATCGTCGACA
CAGCAGTTTCTTGCTTCCCTGCAAGGCCGTTGTTTTTCGTGCTGCCGTCT
TCGTGCTGCTGGTGCCCAAGCAAGCGATTTCCTTTGTATTCAGGCTTTCA
CGTGGTGTCTTTGGTGTCACCCTTCTCTTGTGTAAAAACTGTTTGTGTAC
CGTGTACCGGGTTAGGCGCCATAATGTTTTATTTGAACAACCAAGAATGT
TAATGTTGTCCATATCTGCAGCTTCTTCTCCGTACGTTGTAATACAACAA
CCCTACGTACGAGGACCAGATATACATATGTATATAGTGTTTTTTTTAAT
TAATTAATTAATTATTTGGTTTTGGGCAGGCAATATCGAATAGATAACGA
TTCCTTTGACGACTTCCCCTCCTCTCCCCGCGCCGTTTGTTGTCGTGACC
ACCCAGGCGCGCATCGTGTGGATCTCGGCGGGTGACGAGCGTGTCGGGTT
TGAGACGTCCAAGACGGAGGACGCCGACCTCATGTACCAGGCAATATGCA
TCCTCGTGGACAGATGCCACGCATGAGCTCCACCCACAAGGTGGCGGGGT
AGGGGCGCGCGTGTTCGATCTAGTCCTGCATGGTCAAGGCCACGCTTGGG
CACAGCCGTCCTACGTGCATGGGAACATACGCGACGCGGGGGGAGGGTGC
ATGAGGCATGGGCGGATGCACGAGCGGACACACGCCAAGGGAGATGCCGT
GCATAACCCCATAAACCCTGATGCCGCGTACTCCGGCGTCGATACACCGC
GTCACACCTGCGATGTCCATTCATGATAGACAGGTTTCCGCATGGCTCAT
GCTGGTATATACCATCGTGCGCTTGTAAGCATCTAGGTAGTGTACGGGGC
TTTTGCTATGTATTTCAAGCGTCGATTCTTCGTTATTTTGTCAATATCAA
AACAAGGTTGTCAAGTTTCTGCTGGCGTGGCAAGTCCGAAGCAGAAAGGA
GGGCATTCGGTGTAGTTTTTGCGATAATCTCCGGGTTTTGACGAAACGTA
CATCCGTGTACTCTCATGTGTGTCATTTGGTTGCTGTTCGGGACTGTTGT
GCTAACATGAACTGCTTATATCTGAGCCCCTTATTCAAGTAGTACATCCG
TTGCATGATTTTTCTAATTTTCCTGTGTGACGACGACACTTGTCCGCGAA
AGCTACTTTTACGTAGGCGCGATGGGTTTGGCGCTGTGCCCGAAGCATAA
TATTACAAAGTGTTGTACAGTAGTTGAAATTTATTTTTATTTTTTCCCGT
CTCTTTTCGTTTTCGTCTTCATGTCTCGTTCGCGCCCATTAAAAAATGTG
CGATCGCAAAACGCGCAATTTTTCCCTTCTTCGGCTGTCGATGAAGGGGG
CGTGATTTCGCTGCAGCGTTGGGGCTCCTTCGGCTTCAGGGTTCACTTCG
ATCATGGTTGTCTGTTTTTTCTAGTCGGTACGTGATACAGCAGTCGACGC
CAATCTGGGGCCTCGTAACCCTGCTAAAGGGTGGACAACGTACTTGAAGC
TCCGGGAAAGACTAATTGTTCTGAATTCTTCTTCGAAATCATTACATTAA
GAATATGTGTTTGACATCGCAATTTCTATGGGGGTCGGATCCGTCGGGTC
CGTTCGACTGTCTTATGCCCCATTTTCTTGAAGGAGAGCATCCTGGATAT
CTTGGCGTGTCGGCTATTTTGGCTGGTTCGCAGGGCGTCGGGGTGCCTTC
GTTTTCGTTCAGCTAAACCCGACCAAGTTGACAGAAAATCGGGCGTTTTG
AGACGGTTTGAAAACACGGAAGCTACGACGATGTTTCTCCAAGGATCTTA
CAAGAAGTGCTCAGCCGAAGACCCCCGTCTCCAAAGACCCCGAGCACTCC
ATGGCCGACCGTCGCTGCTGCCTACCCCAAGCGTGCATGCCCTCGCTTCC
GCCGACACACGAAAATCTATGTAGTTTGCTCCGTGCAGACTTGGATTCGT
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig205:43169..47369+

>mRNA_L-elsbetiae_contig205.6178.1 ID=mRNA_L-elsbetiae_contig205.6178.1|Name=mRNA_L-elsbetiae_contig205.6178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig205:43169..47369+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAATTCGATGGGACCGGGGAGAGTGGATTCGGTGATGGAAAGCCG
GGCAGCGAGATGAGGAATTCGATGGGACCGGGGAGAGTGGATTCGGTGAT
GGAAAGCCGGGCAGCGAGCCCGACGACCCCTGAGGTCTCGCCGCCGGTGG
AAGACCAAGTGACGGCCGCTCAACGCGCCAAGCAGGAAGCGCACAATGAC
CGCATCGTGGCCACGTTCAACAGCCCCGACGACCCCTGAGGTCTCGCCGC
CGGTGGAAGACCAAGTGACGGCCGCTCAACGCGCCAAGCAGGAAGCGCAC
AATGACCGCATCGTGGCCACGTTCAACAGCGTTATGCTCGCCGACGGCCT
CAAGGTCCTGAAGCACCACCGGCGTAGCTCCAAGAAGGCGGCAAGCCGCG
TGATCCGCTTCGTGCCCGACTACGGAGGGGCTCTGGTGTGGGACAAGCCT
CTGCGCCAGCCCGGCGCCAAGGCCAGCCGGGTCCCGCTTGACGCCATCAC
CCAGGTCGAGCTGGAGGTTATGCTCGCCGACGGCCTCAAGGTCCTGAAGC
ACCACCGGCGTAGCTCCAAGAAGGCGGCAAGCCGCGTGATCCGCTTCGTG
CCCGACTACGGAGGGGCTCTGGTGTGGGACAAGCCTCTGCGCCAGCCCGG
CGCCAAGGCCAGCCGGGTCCCGCTTGACGCCATCACCCAGGTCGAGCTGG
AGGCGCGCATCGTGTGGATCTCGGCGGGTGACGAGCGTGTCGGGTTTGAG
ACGTCCAAGACGGAGGACGCCGACCTCATGTACCAGGCAATATGCATCCT
CGTGGACAGATGCCACGCATGAGCGCGCATCGTGTGGATCTCGGCGGGTG
ACGAGCGTGTCGGGTTTGAGACGTCCAAGACGGAGGACGCCGACCTCATG
TACCAGGCAATATGCATCCTCGTGGACAGATGCCACGCATGA
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