mRNA_L-elsbetiae_contig205.6176.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig205.6176.1
Unique NamemRNA_L-elsbetiae_contig205.6176.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: D8LRR6_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR6_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 9.570e-107
Identity = 176/258 (68.22%), Postives = 204/258 (79.07%), Query Frame = 1 
Query:   28 TFLLGVTHAFVYPVFPPAVGQPSRVT--SAGSPGIPREGHRIRMETKPAPGPSGLENLNKWDPSAQQAFIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAISAIFIIRGCPLRTRAGATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATMLP 795
            +FL G T+AF           P RV   +A +PG  R      METK   GPSG+++L+KWDPSAQQAFIQPA HNKNPVRVAAIL A+ LA+KG++LVPGNLAK  H++A   WMGST+WTTF AGITMMRNLPRQTFGKLQSKLFP YFQ NF +I AI+IIRGCPLRTRAG TLLVSL +TLLNLVLLEPKSTS+M +R     YKLED+KKKD++EYK LG  FG +HG+SSFANLGALIGSFVYAWELA+++P
Sbjct:   11 SFLGGSTYAFC----------PMRVPHRAAVAPGGIRR-MMTAMETKSEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMMRNLPRQTFGKLQSKLFPLYFQFNFVSILAIYIIRGCPLRTRAGVTLLVSLFSTLLNLVLLEPKSTSIMLER-----YKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIP 252
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BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A6H5KHA9_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA9_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.140e-62
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:  151 METKPAPGPSGLENLNKWDPSAQQAFIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAISAIFIIRGCPLRT 534
            ME KP  GPSG+++L+KWDPSAQQAFIQPA HNKNPVRVAAIL A+ LA+KG++LVPGNLAK  H++A   WMGST+WTTF AGITM RNLPRQTFGKLQSKLFP YFQLNFA+I AI+IIRGCPLR+
Sbjct:    1 MEVKPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGAMLVPGNLAKMVHVVALNAWMGSTLWTTFFAGITMFRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCPLRS 128
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A0G4F9E7_VITBC (DUF4149 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F9E7_VITBC)

HSP 1 Score: 183 bits (464), Expect = 2.120e-50
Identity = 101/205 (49.27%), Postives = 133/205 (64.88%), Query Frame = 1 
Query:  184 LENLNKWDPSAQQAFIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAISAIFIIRGCP-LRTRAG-ATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATML 792
            +  L +WDP   Q ++ PA HN+N VR+ A+L+   LA+  ++ V   L  F H+LAYA W+GS ++TTFVAGITM RNLPR+TFG+LQSKLFP YFQL    +  +    G   L  RA  A L V+L  TL NL +LEPKST +MF+R     Y++ED+ +KD  EYKAL   FG +HGLSS  NL AL G   + W LA+++
Sbjct:   94 MAGLERWDP---QVWVAPAVHNRNSVRLLALLSTLLLASGSTVFVSKQLTLFVHLLAYATWLGSVIYTTFVAGITMFRNLPRKTFGRLQSKLFPLYFQLCTGMLIVLLTTGGASVLPNRAMMANLAVALVMTLANLFVLEPKSTEIMFKR-----YEMEDQGRKDDPEYKALAKGFGKFHGLSSLTNLIALCGGVAHGWTLASLI 290
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BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A835YZR0_9STRA (DUF4149 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.130e-47
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1 
Query:  172 GPSGLENLNKWDPSAQQA---FIQPATHNKNPVRVAAILAASALAAKGSLL-VPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLN-FAAISAIFIIRGCPLRTRAGATLLVSLATTLL----NLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELA 783
            GP G+  L+ WDPS++QA   ++QPA HN NPVRVAA++AA  LAA+GSL      +  F H+L++ + +GST++TTF+AGI M +NLPRQTFGKLQSKLFPAYF LN   A++ +  + G        A   V LA  L+    NL +LEP+ST VM     L++Y+LE+  +    EY  L   FG  HG+SS  NLGAL G+  YAW LA
Sbjct:   86 GPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVM-----LARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 293
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BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A7S3RBJ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RBJ6_9SPIT)

HSP 1 Score: 150 bits (380), Expect = 2.100e-39
Identity = 90/194 (46.39%), Postives = 122/194 (62.89%), Query Frame = 1 
Query:  220 QAFIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAISAIFIIRGCPLRTRAGATLL-------VSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWEL 780
            QA++ PA  N    R A+I  A ALAA GS  +   +A FAH++++    GS ++TTF AGITM +NLPRQTFG+LQSKLFP YF+L+ A++    ++ G      +G +L         +L  TLLNL  LEP+ST VMF R     Y LE+E K++++EYK    +FG  HG+SS ANLGALIG   ++W L
Sbjct:    3 QAWVPPAIWNTPAFRAASIATALALAAAGSRQLGARMAIFAHLISFGSLFGSMIYTTFFAGITMFKNLPRQTFGRLQSKLFPIYFKLHAASLC---VMLGTLRAVASGGSLTRPVYACGSALLFTLLNLFYLEPQSTKVMFTR-----YDLENEGKQESDEYKVAAKKFGPLHGMSSLANLGALIGVIAHSWWL 188
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: W7TXS6_9STRA (DUF4149 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXS6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.300e-38
Identity = 89/199 (44.72%), Postives = 125/199 (62.81%), Query Frame = 1 
Query:  205 DPSAQQAFIQPATHNKNPVRVAAILAASALAAKGS-LLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAISAIFIIRGCPLRTRAGAT--LLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATML 792
            D +  Q +I+PA HNK  VR+ A+LA  ++A K S + +P + A + H+L +    GS ++TTFV G+ M+++LPRQTFG+LQSKLFP YF  +  A+ A+ ++ G  L   A A   L  SLA  L+N + LEP ST VMFQR     Y LE + +++  EYK L  RFG  HG SS  NL  ++G FV+A+ L+ ML
Sbjct:   74 DSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALAL-ALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQR-----YALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: I0YK71_COCSC (DUF4149 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YK71_COCSC)

HSP 1 Score: 145 bits (366), Expect = 7.890e-37
Identity = 90/210 (42.86%), Postives = 134/210 (63.81%), Query Frame = 1 
Query:  190 NLNKWDPSAQQA---FIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAA----ISAI-FIIRGCPLRTRAGATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEK-KKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATML 792
            N N  +PS ++     ++P+  NKN VR+A + AA  +AA+ +  +P N+A F H++A+ +W+GS +WTTF+AGITM +NLPRQTFGKLQ+KLFP YF +  AA    I  + F + G   RT++  TL V+  T+L N + +EP +T++MF+R     Y LE+   +KD+ + K L  +FG +HG+SS  NL AL     + W LA+ L
Sbjct:   31 NENGANPSGEELSGPMLEPSAFNKNWVRLAWVSAALVVAARSTEFLPVNVAVFIHLMAWGLWLGSNIWTTFIAGITMFKNLPRQTFGKLQAKLFPQYFAVAIAAGVLQIGTLAFGVPGGIARTQS-ITLGVAFVTSLANWLYVEPVATNLMFER-----YNLENAPGEKDSAKIKQLYKQFGKFHGISSLLNLVALGAVISHGWWLASKL 234
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: E1ZKP7_CHLVA (DUF4149 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZKP7_CHLVA)

HSP 1 Score: 142 bits (357), Expect = 1.110e-35
Identity = 83/196 (42.35%), Postives = 120/196 (61.22%), Query Frame = 1 
Query:  217 QQAFIQPATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAIS---AIFIIRGCPLRTRAGATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEK-KKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATML 792
            Q   ++P+T NK  VR+  + A  A AA+G+  +P     F H+LAY +W+GS VWT+FVAGITM+R+LPRQTFG+LQ++LFP YF L+ A  +    + +        +    + + LAT+LL+L+++EP +T VMFQR     Y+LE     +D     AL   FG +HG+SS  NLG LI +  + W LA+ L
Sbjct:   32 QGEMLEPSTSNKRWVRLLVLSATVAAAARGTAYLPTAGVAFVHLLAYGIWLGSLVWTSFVAGITMIRHLPRQTFGRLQARLFPKYFALSAACTAIQLGVLLFAAAAPPAKQLVLVGLGLATSLLSLLVVEPITTKVMFQR-----YELESAAGPRDEAAITALKKSFGNWHGISSLINLGTLITAIGHGWWLASKL 222
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A2P6VJT2_9CHLO (Transmembrane 205 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJT2_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 5.590e-35
Identity = 82/190 (43.16%), Postives = 116/190 (61.05%), Query Frame = 1 
Query:  235 PATHNKNPVRVAAILAASALAAKGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQLNFAAIS---AIFIIRGCPLRTRAGATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEK-KKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELATML 792
            P+  NKN VR+ A+ A  A AA+G+  +P     F H+LAY  W+G+ VWTTF+AGI M +NLPRQ FG++QSKLFP YF L+ AA +    +          +    L + LA++LLNL+++EP+ T VMFQR     Y LE+    +D    KAL  +FG +HG+SS  NL  L+ +  + W LA++L
Sbjct:   74 PSAANKNIVRLLAVSAVVAAAARGTAYLPTAGIAFVHLLAYGSWLGAIVWTTFIAGIVMFKNLPRQMFGRVQSKLFPLYFGLSAAASTIQLGVLAFAAANAPQKQFVLLGIGLASSLLNLLIVEPQCTRVMFQR-----YDLENASGPRDEGAIKALQKQFGKWHGISSLINLATLVVAVGHGWWLASLL 258
[Close]
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Match: A0A7S1D7W6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7W6_CYCTE)

HSP 1 Score: 141 bits (356), Expect = 5.740e-35
Identity = 94/215 (43.72%), Postives = 125/215 (58.14%), Query Frame = 1 
Query:  166 APGPSG--LENLNKWDPSAQQAFIQPATHNKNPVRVAAILAASALAAKG---SLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQSKLFPAYFQL-NFAAISAIFIIRGCP--LRTRAGATLLVSLATTLLNLVLLEPKSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGALIGSFVYAWELAT 786
            AP  SG  + +L +WDP+    +     HN N  R AAI+ A    +     SL +    A   HILA+  W G+ ++TTFVAGITM RNLPRQTFGKLQSKLFP YF L   + I  +  +   P  L ++A   L   L  TLLN + LEP ST+VMF R  +     +D + K++ EYK L + FG YHG+SS ANL AL  +FV+ + +A+
Sbjct:   64 APPKSGKVVNSLPEWDPTN---WTPARLHNSNIFRAAAIVLALVWVSGSPTKSLYMSRKAAATTHILAFGTWFGTMLYTTFVAGITMYRNLPRQTFGKLQSKLFPKYFVLCTISVILQLATVSFMPSALASKATKALGTGLVMTLLNQLWLEPTSTTVMFSRYEIENS--DDPQAKESAEYKKLASDFGKYHGMSSLANLVALCAAFVHGFYIAS 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig205.6176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR6_ECTSI9.570e-10768.22DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KHA9_9PHAE1.140e-6277.34DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0G4F9E7_VITBC2.120e-5049.27DUF4149 domain-containing protein n=1 Tax=Vitrella... [more]
A0A835YZR0_9STRA5.130e-4748.83DUF4149 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3RBJ6_9SPIT2.100e-3946.39Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
W7TXS6_9STRA4.300e-3844.72DUF4149 domain-containing protein n=2 Tax=Monodops... [more]
I0YK71_COCSC7.890e-3742.86DUF4149 domain-containing protein n=1 Tax=Coccomyx... [more]
E1ZKP7_CHLVA1.110e-3542.35DUF4149 domain-containing protein n=1 Tax=Chlorell... [more]
A0A2P6VJT2_9CHLO5.590e-3543.16Transmembrane 205 n=1 Tax=Micractinium conductrix ... [more]
A0A7S1D7W6_CYCTE5.740e-3543.72Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig205contigL-elsbetiae_contig205:18635..22426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue5.2e-86
Seed eggNOG ortholog2880.D8LRR6
Preferred nameTMEM205
KEGG koko:K07884
KEGG Pathwayko04972,map04972
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain of unknown function (DUF4149)
EggNOG OGsKOG2886@1,KOG2886@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-08_002150.1
Exons6
Model size1487
Cds size798
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.3568504-CDS-L-elsbetiae_contig205:18634..187151622815845.3568504-CDS-L-elsbetiae_contig205:18634..18715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18635..18715 +
1691683141.7666104-CDS-L-elsbetiae_contig205:18634..187151691683141.7666104-CDS-L-elsbetiae_contig205:18634..18715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18635..18715 +
1622815845.371006-CDS-L-elsbetiae_contig205:18996..192511622815845.371006-CDS-L-elsbetiae_contig205:18996..19251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18997..19251 +
1691683141.7803907-CDS-L-elsbetiae_contig205:18996..192511691683141.7803907-CDS-L-elsbetiae_contig205:18996..19251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 18997..19251 +
1622815845.3830194-CDS-L-elsbetiae_contig205:19703..198171622815845.3830194-CDS-L-elsbetiae_contig205:19703..19817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 19704..19817 +
1691683141.7919717-CDS-L-elsbetiae_contig205:19703..198171691683141.7919717-CDS-L-elsbetiae_contig205:19703..19817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 19704..19817 +
1622815845.3943667-CDS-L-elsbetiae_contig205:20937..210171622815845.3943667-CDS-L-elsbetiae_contig205:20937..21017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 20938..21017 +
1691683141.8088424-CDS-L-elsbetiae_contig205:20937..210171691683141.8088424-CDS-L-elsbetiae_contig205:20937..21017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 20938..21017 +
1622815845.4059663-CDS-L-elsbetiae_contig205:21185..212961622815845.4059663-CDS-L-elsbetiae_contig205:21185..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 21186..21296 +
1691683141.817905-CDS-L-elsbetiae_contig205:21185..212961691683141.817905-CDS-L-elsbetiae_contig205:21185..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 21186..21296 +
1622815845.4195645-CDS-L-elsbetiae_contig205:21580..217371622815845.4195645-CDS-L-elsbetiae_contig205:21580..21737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 21581..21737 +
1691683141.8295114-CDS-L-elsbetiae_contig205:21580..217371691683141.8295114-CDS-L-elsbetiae_contig205:21580..21737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig205 21581..21737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815845.4292912-UTR-L-elsbetiae_contig205:21737..224261622815845.4292912-UTR-L-elsbetiae_contig205:21737..22426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 21738..22426 +
1691683141.8402555-UTR-L-elsbetiae_contig205:21737..224261691683141.8402555-UTR-L-elsbetiae_contig205:21737..22426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig205 21738..22426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig205.6176.1prot_L-elsbetiae_contig205.6176.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig205 18635..21737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig205.6176.1

>prot_L-elsbetiae_contig205.6176.1 ID=prot_L-elsbetiae_contig205.6176.1|Name=mRNA_L-elsbetiae_contig205.6176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MQAYHHLIVTFLLGVTHAFVYPVFPPAVGQPSRVTSAGSPGIPREGHRIR
METKPAPGPSGLENLNKWDPSAQQAFIQPATHNKNPVRVAAILAASALAA
KGSLLVPGNLAKFAHILAYAVWMGSTVWTTFVAGITMMRNLPRQTFGKLQ
SKLFPAYFQLNFAAISAIFIIRGCPLRTRAGATLLVSLATTLLNLVLLEP
KSTSVMFQRQVLSKYKLEDEKKKDTNEYKALGARFGLYHGLSSFANLGAL
IGSFVYAWELATMLP*
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mRNA from alignment at L-elsbetiae_contig205:18635..22426+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig205.6176.1 ID=mRNA_L-elsbetiae_contig205.6176.1|Name=mRNA_L-elsbetiae_contig205.6176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3792bp|location=Sequence derived from alignment at L-elsbetiae_contig205:18635..22426+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGCTTATCATCACTTAATTGTGACCTTCCTACTTGGCGTGACCCA
TGCCTTCGTGTATCCCGTATTTCCGCCAGCGGTGAGGGAGATGTATTGAG
TTTGTTGTTCGGGTTGTCTTGAGTCTACCTCCCCTAGGCCTATCTATCCA
TCCAACAAGGTTGTATATGATACGTGCAAGCTTTATTGTAAAACACACGT
ATGTCAGGTCCAAAACATTTGTGCGTGGGGCATACATATATTAAAAATGC
CGGTACTGTGTATGATGTATCACGACCACTGACTGACTGCTTGGTGGAAT
TTATATCACACCTAGTCTAGACATCGATCCATCTCATGACTAAAGCAGCG
ATACCCCTCCAGGTGGGGCAGCCTTCGAGGGTAACCTCAGCAGGATCCCC
AGGAATCCCGCGGGAGGGACACCGTATCAGAATGGAGACAAAGCCTGCAC
CGGGCCCCAGCGGTTTGGAAAATCTCAATAAGTGGGACCCGTCCGCACAG
CAGGCATTTATTCAGCCAGCGACACACAACAAGAATCCTGTCCGAGTCGC
AGCTATTCTCGCCGCGTCAGCGCTGGCCGCGAAAGGCTCGCTGCTTGTGC
CCGGCAACTTGGCGAAGGTACTCCACTGGTAGAAATCATATCGCATTCGA
CTCACCCAACGATTCAACAAGACGTTACTGTACCTACATTCGAGGAGAAA
ATCGTCTCAATCTAAATTATTTAGCTCTGCGGCCTGCCTTTTGAAACACT
TTACATACGTGTAAATGCCACCTTGGATTAGCCAGTGAGAGTTACGTCAT
GAGATGAACCGGCTAGTACCGTATCCTGACCGGAGGATCACAGATGAAGT
CAGTCTCCGTTCCTGAGTTTCCTCGGATGAACTGAAGAACGTTTCTACGT
AGTATCACAACAAGGTCCAAATACTTCGCGCCCGTATTCCCAACTGCCCT
GCCTGTGCAACGCGAGAGACACTTGAAGCAAGTTATAACGGTTGGCTGTT
AGCAAAGAGATCCCATCGCAGGATGCTGATGCATTGCCTCTACTGCCCTT
CTTTAACTTAACATCGCAGTTTGCCCACATTTTAGCGTACGCGGTATGGA
TGGGAAGCACGGTGTGGACAACGTTTGTGGCGGGCATCACGATGATGCGG
AATCTACCCCGCCAGACGTTCGGCAAGCTTCAGGTCTGCGCGGCCAACAC
AAACCTAGGTTTCATTTTTTAGCGCTTAGAGCATGGCTCGTGTGCAACGC
GTAGGAATTTCATGGGCATTCCGTGAGCTCTCTCATCGATTACCTTTTTC
TTGGCCTTTCCGCCGCATCATGGGGCTTAAAGGGACGGTGAGGGGGGGGG
GGGGCACAGTGTAATTTGGATAGAGGGGCCCAGTGACGAGCACGATTGAC
AGATTTTTTGAATGCAAAATTTTTGGGGTATGCCGAAACTGACAGCACGG
GCTCTCCCAAAAGCATCACTTTCCAGTTCGGCCCTTAGCGTCCCGCTGCT
CGTCCCCTCGACCCACTCCAACGCAACAGTTTGCGTTTCTCCACAGAGAA
ATGCTCTTGCGCATCATTTCTAGCTGTCTTGAAGGCAAAGATTTTGCTCT
CCAAAGGTGCGGTTCTGAAAAGGACTTGTCAAGCATTCATTTCTCTGACG
CTTGGTGCTCACGAAGTTATGGAGCGAGTCCCTCACAAGCAAGAACAGCG
CAAGCCGCTGGCAGGGCCTACTGATATGGTGTGTAGGAGCCGTCGCATGC
CCCAGGTAGCGGTAGCAGGCAGCTGTGAGTCACGCTTTGGATTTGCTGGT
GGACACGACTTATTTTTTCCAACAGGCTTTTTTGCGGTGAATCGGGTGGA
CATTTAAAACTGCACCCTAAAGGCCATGATTTTGGCACCGATCAACAAAC
GGACTCGACGCGAATGTAGCCCGGCTGTTTTTAAAGAGTGAAAGGTATTC
GAGGGGTAGCCCAGCAAATTTATGCATAGCTCTCAGTTCACACGCGCAAG
GGGTGGGTAAAAAACTCCCCCCAAACAAGACAAAAAAGAGCCGACAACCT
CGGAACACCTCTGTTTTTTGGCTGCACTGTCAAAACATGCGGGCATTTTT
GGAAAGCCCACACAAACTTCAAGTGAGGCTCCGTGATGTTCAGCGGGGGT
GTGCGGTTATTCTTCGAGAAAGGCCTATACTGATCAATGGGCACCCCTTC
CCGTCCCCTTAAATGACTAGGTTGCACTAGCGTTCACTGCCTGTCTGTAT
CCCTGCATCTGCACCCGACAATTTCCTCTGCCTTCACGTCTGTCTCTTCG
CAGTCAAAGCTGTTCCCAGCTTACTTCCAGCTCAACTTCGCCGCTATATC
AGCGATCTTCATCATCCGCGGTTGCCCTCTCCGGTGAATATTTTGCGAAG
CCGAGATCTTGATCTATGTAAATACGTTGGTCGGTGTTGGTACTTTGCGC
TGTACTCGAAAACAAAACCACCTCTTGCATGATTGTCTTCCATCGTCAAG
GTGTTCTCGCTCAACCCATCATTTCGCCCCCCCGACAAAACTGACACGCA
GGACCCGAGCAGGCGCAACGTTGCTTGTATCGTTGGCCACAACGCTCTTG
AATCTGGTGCTGCTCGAACCGAAGTCAACAAGCGTCATGTTTCAGAGGCA
GGTTCTCTCGAAGTAGAGAGCAGATAGGGTTCTCGCCAAGCACGCAGCTC
TGCAATGGCCAGAATCTTTGCATGTCTCCGAGCCACCTCACTGCGAACCA
GGGCGCACATCGAACAGACGGTGCCTTGTGGTGCCCATGGTTAAATCTAT
GGGAAACTTTCGACATCATCACAACCCTTAGCCGCCACAGGTAATAGGTT
GGGGTTGCTTGTGACAGCACCGTATCCTTTTGTCACAGGGCAAATAAACA
TTCCGCACCTTCATATTGATGCAGATGCCACGCTGTCTATGCACAGGTAC
AAGCTGGAGGATGAAAAGAAGAAGGACACGAATGAATATAAAGCTCTAGG
GGCAAGGTTCGGGCTGTATCATGGATTATCGTCCTTCGCCAATCTGGGGG
CTCTCATCGGAAGTTTTGTGTACGCGTGGGAGTTGGCCACCATGTTGCCT
TAGCCGGGGCACGTATTGATCACCTCTAAGTTGTTCCGAAGAAAACAATA
GAGGTGGTTCGGGAATATATGGAGAACCCCGGCTTTGGGGGTACCAAGAT
AGAACCAGGGAGTGTATCCCCGCGGTTGGTGATGTTTGCTTCCAGTTTTG
TTTTTACCTCACAAAGCGCGAAGAGGGGAGCGGAGGGCTATCTGTGGGTT
ATCTTGTGTTTATCTTTGTGCTTTGCGGACCCTTCGGCCCTTCCGGGTCT
ATTTCATGTTTTTCATTTTTTCAGTATACCCTTCTTAGGGTAAGTTATCC
TACTATGACCACAGGAATCGACCGCGCCAGTGTTATTACGGACCCATGGA
GGTACTCGACAGAGAGATCAAAACGGTTTTTAATGGGAAGACAACAACAA
TCAATGGATGTAAGCTTGCGACAAGCTGGTTTGGTCGAGATATCCACAGT
ATGGGTGGACGCGATTTCTCACGCGATTTTTACGAACTAGAGCCTGGTTT
TTTTGGGATGTGATCCGGATCGCCCTTGCCGAGAGTTTCACGACGTGTCA
ACAGGGCCAAGAATGCCAACGAAGCTCCACAAACGGTGTAAAAGTCCGTT
TTTAGAAGTTCCACGCTGCTCAGCAGTGCGTCGTCCACGCCGCACCACGC
AGCTTCCCTGCACAGGTATCACGCGTGGATAGGTCTTCTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig205:18635..22426+

>mRNA_L-elsbetiae_contig205.6176.1 ID=mRNA_L-elsbetiae_contig205.6176.1|Name=mRNA_L-elsbetiae_contig205.6176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig205:18635..22426+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGCTTATCATCACTTAATTGTGACCTTCCTACTTGGCGTGACCCA
TGCCTTCGTGTATCCCGTATTTCCGCCAGCGATGCAAGCTTATCATCACT
TAATTGTGACCTTCCTACTTGGCGTGACCCATGCCTTCGTGTATCCCGTA
TTTCCGCCAGCGGTGGGGCAGCCTTCGAGGGTAACCTCAGCAGGATCCCC
AGGAATCCCGCGGGAGGGACACCGTATCAGAATGGAGACAAAGCCTGCAC
CGGGCCCCAGCGGTTTGGAAAATCTCAATAAGTGGGACCCGTCCGCACAG
CAGGCATTTATTCAGCCAGCGACACACAACAAGAATCCTGTCCGAGTCGC
AGCTATTCTCGCCGCGTCAGCGCTGGCCGCGAAAGGCTCGCTGCTTGTGC
CCGGCAACTTGGCGAAGGTGGGGCAGCCTTCGAGGGTAACCTCAGCAGGA
TCCCCAGGAATCCCGCGGGAGGGACACCGTATCAGAATGGAGACAAAGCC
TGCACCGGGCCCCAGCGGTTTGGAAAATCTCAATAAGTGGGACCCGTCCG
CACAGCAGGCATTTATTCAGCCAGCGACACACAACAAGAATCCTGTCCGA
GTCGCAGCTATTCTCGCCGCGTCAGCGCTGGCCGCGAAAGGCTCGCTGCT
TGTGCCCGGCAACTTGGCGAAGTTTGCCCACATTTTAGCGTACGCGGTAT
GGATGGGAAGCACGGTGTGGACAACGTTTGTGGCGGGCATCACGATGATG
CGGAATCTACCCCGCCAGACGTTCGGCAAGCTTCAGTTTGCCCACATTTT
AGCGTACGCGGTATGGATGGGAAGCACGGTGTGGACAACGTTTGTGGCGG
GCATCACGATGATGCGGAATCTACCCCGCCAGACGTTCGGCAAGCTTCAG
TCAAAGCTGTTCCCAGCTTACTTCCAGCTCAACTTCGCCGCTATATCAGC
GATCTTCATCATCCGCGGTTGCCCTCTCCGTCAAAGCTGTTCCCAGCTTA
CTTCCAGCTCAACTTCGCCGCTATATCAGCGATCTTCATCATCCGCGGTT
GCCCTCTCCGGACCCGAGCAGGCGCAACGTTGCTTGTATCGTTGGCCACA
ACGCTCTTGAATCTGGTGCTGCTCGAACCGAAGTCAACAAGCGTCATGTT
TCAGAGGCAGGTTCTCTCGAAGACCCGAGCAGGCGCAACGTTGCTTGTAT
CGTTGGCCACAACGCTCTTGAATCTGGTGCTGCTCGAACCGAAGTCAACA
AGCGTCATGTTTCAGAGGCAGGTTCTCTCGAAGTACAAGCTGGAGGATGA
AAAGAAGAAGGACACGAATGAATATAAAGCTCTAGGGGCAAGGTTCGGGC
TGTATCATGGATTATCGTCCTTCGCCAATCTGGGGGCTCTCATCGGAAGT
TTTGTGTACGCGTGGGAGTTGGCCACCATGTTGCCTTAGGTACAAGCTGG
AGGATGAAAAGAAGAAGGACACGAATGAATATAAAGCTCTAGGGGCAAGG
TTCGGGCTGTATCATGGATTATCGTCCTTCGCCAATCTGGGGGCTCTCAT
CGGAAGTTTTGTGTACGCGTGGGAGTTGGCCACCATGTTGCCTTAG
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