mRNA_L-elsbetiae_contig20470.6168.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20470.6168.1
Unique NamemRNA_L-elsbetiae_contig20470.6168.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20470.6168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20470contigL-elsbetiae_contig20470:1769..2125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815844.1800776-UTR-L-elsbetiae_contig20470:1768..17921622815844.1800776-UTR-L-elsbetiae_contig20470:1768..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20470 1769..1792 +
1691683140.851167-UTR-L-elsbetiae_contig20470:1768..17921691683140.851167-UTR-L-elsbetiae_contig20470:1768..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20470 1769..1792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815844.1902556-CDS-L-elsbetiae_contig20470:1792..21251622815844.1902556-CDS-L-elsbetiae_contig20470:1792..2125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20470 1793..2125 +
1691683140.8610435-CDS-L-elsbetiae_contig20470:1792..21251691683140.8610435-CDS-L-elsbetiae_contig20470:1792..2125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20470 1793..2125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20470.6168.1prot_L-elsbetiae_contig20470.6168.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20470 1793..2125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20470.6168.1

>prot_L-elsbetiae_contig20470.6168.1 ID=prot_L-elsbetiae_contig20470.6168.1|Name=mRNA_L-elsbetiae_contig20470.6168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MTTATLLPTAPRPAACLSVGLNSIPPFTRSTQGRQQGRGKTRSFSLLFRN
NSPGAQAKGSGRNETRTKNETKRDKNQKPLKGAKRVRHPFSKQTTAATAR
RPPSRQRQGGA
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mRNA from alignment at L-elsbetiae_contig20470:1769..2125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20470.6168.1 ID=mRNA_L-elsbetiae_contig20470.6168.1|Name=mRNA_L-elsbetiae_contig20470.6168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig20470:1769..2125+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCGACGGCAACCCCCCTCTCGATGACGACCGCAACACTCTTGCCTAC
CGCTCCTCGGCCCGCTGCTTGCCTCTCGGTGGGGCTAAACAGCATCCCTC
CCTTCACGAGAAGCACACAAGGACGACAGCAAGGTCGTGGGAAAACGCGT
TCTTTCTCTCTCCTCTTCCGCAACAACTCTCCCGGGGCGCAAGCAAAAGG
GTCCGGCCGAAACGAAACCAGAACCAAAAACGAAACGAAACGAGACAAAA
ATCAAAAACCCCTCAAGGGCGCCAAACGCGTTCGCCATCCATTCTCCAAA
CAAACCACCGCTGCCACTGCCAGGCGCCCACCCTCTCGACAAAGACAAGG
AGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20470:1769..2125+

>mRNA_L-elsbetiae_contig20470.6168.1 ID=mRNA_L-elsbetiae_contig20470.6168.1|Name=mRNA_L-elsbetiae_contig20470.6168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig20470:1769..2125+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACCGCAACACTCTTGCCTACCGCTCCTCGGCCCGCTGCTTGCCT
CTCGGTGGGGCTAAACAGCATCCCTCCCTTCACGAGAAGCACACAAGGAC
GACAGCAAGGTCGTGGGAAAACGCGTTCTTTCTCTCTCCTCTTCCGCAAC
AACTCTCCCGGGGCGCAAGCAAAAGGGTCCGGCCGAAACGAAACCAGAAC
CAAAAACGAAACGAAACGAGACAAAAATCAAAAACCCCTCAAGGGCGCCA
AACGCGTTCGCCATCCATTCTCCAAACAAACCACCGCTGCCACTGCCAGG
CGCCCACCCTCTCGACAAAGACAAGGAGGGGCGATGACGACCGCAACACT
CTTGCCTACCGCTCCTCGGCCCGCTGCTTGCCTCTCGGTGGGGCTAAACA
GCATCCCTCCCTTCACGAGAAGCACACAAGGACGACAGCAAGGTCGTGGG
AAAACGCGTTCTTTCTCTCTCCTCTTCCGCAACAACTCTCCCGGGGCGCA
AGCAAAAGGGTCCGGCCGAAACGAAACCAGAACCAAAAACGAAACGAAAC
GAGACAAAAATCAAAAACCCCTCAAGGGCGCCAAACGCGTTCGCCATCCA
TTCTCCAAACAAACCACCGCTGCCACTGCCAGGCGCCCACCCTCTCGACA
AAGACAAGGAGGGGCG
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