mRNA_L-elsbetiae_contig20460.6165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20460.6165.1
Unique NamemRNA_L-elsbetiae_contig20460.6165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A6H5JKX8_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.270e-33
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQEL 228
            + +Y+TVCGEG TMGD+CVPLVY HLEGAEQVTL+GVFHSVDKPDEWYG+EGVVDRWL  VAQEL
Sbjct:  232 YGSYQTVCGEGATMGDACVPLVYTHLEGAEQVTLDGVFHSVDKPDEWYGSEGVVDRWLVTVAQEL 296          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A7S2LHJ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHJ3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.820e-19
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQEL 228
            + +Y+ VCG+G+ +GD  VPL  +HL+GAEQ+TLE  FHS++ P+EWYGA+  +D+W   V ++L
Sbjct:  121 YNSYKAVCGDGNAIGDGVVPLEASHLDGAEQLTLENCFHSINAPEEWYGADRFIDQWHKVVLKQL 185          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A4D9CVP3_9STRA (GPI inositol-deacylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVP3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.610e-18
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAV 216
            FR+Y  VCG GD +GD  VPL  AHLEGA+QV L+ VFHS++ P  WYG+E V+D WL  V
Sbjct:  237 FRSYVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEVIDSWLGEV 297          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: W7T4S9_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4S9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.840e-18
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAV 216
            FR+Y  VCG GD +GD  VPL  AHLEGA+QV L+ VFHS++ P  WYG+E V+D WL  V
Sbjct:  248 FRSYVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEVIDSWLGEV 308          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A1Z5JID7_FISSO (AB hydrolase-1 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JID7_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 3.140e-18
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQELG 231
            + +YE VCG+GD  GD  VPL   HL+ A+Q+TL G+FHS+++PD+WYG++ V+D W   + + +G
Sbjct:  217 YNSYEAVCGQGDVTGDGVVPLNSGHLDQAKQLTLPGIFHSINRPDQWYGSDNVIDSWHDVMLELIG 282          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A1Z5K4M5_FISSO (AB hydrolase-1 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4M5_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 3.170e-18
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQELG 231
            + +YE VCG+GD  GD  VPL   HL+ A+Q+TL G+FHS+++PD+WYG++ V+D W   + + +G
Sbjct:  212 YNSYEAVCGQGDVTGDGVVPLESGHLDQAKQLTLPGIFHSINRPDQWYGSDNVIDSWHDVMLELVG 277          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A7S2LG03_9STRA (GPI inositol-deacylase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG03_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.900e-18
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQEL 228
            + +Y+ VCG+G+ +GD  VPL  +HL+GAEQ+TLE  FHS++ P+EWYGA+  +D+W   V ++L
Sbjct:  295 YNSYKAVCGDGNAIGDGVVPLEASHLDGAEQLTLENCFHSINAPEEWYGADRFIDQWHKVVLKQL 359          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: B7FX54_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX54_PHATC)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-17
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   28 LPFRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQEL 228
            L F +YE VCG G +MGD  +P + AHL+ A Q+ L+GVFHS++ PD+WYG++ ++DRW   + +++
Sbjct:  231 LAFNSYEAVCGAGTSMGDGLIPRMSAHLDDAIQINLDGVFHSINAPDKWYGSDSLLDRWHDTMLEQI 297          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A7S4K5P4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K5P4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.060e-17
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKP------DEWYGAEGVVDRWLSAVAQELG 231
            F +YE+VCG+G   GD  VPL +  LEGA Q+ LEGV HS+++       D WYG+EG++D+WL AV +E G
Sbjct:  260 FTSYESVCGQGGVTGDGVVPLDWTRLEGARQIRLEGVVHSINEAGTTIPTDRWYGSEGIIDQWLPAVLEEAG 331          
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Match: A0A7S3XW86_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW86_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-16
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   34 FRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFHSVDKPDEWYGAEGVVDRWLSAVAQEL 228
            F +Y  VCG GD  GD  VPL  AHL+GA Q+TL GVFHS++ P  WYG+E VVD WL  +   L
Sbjct:  105 FGSYAAVCGRGDVTGDGVVPLNSAHLDGAAQLTLPGVFHSINNP-VWYGSEKVVDLWLRPLVSSL 168          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20460.6165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKX8_9PHAE3.270e-3383.08AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S2LHJ3_9STRA4.820e-1949.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9CVP3_9STRA1.610e-1859.02GPI inositol-deacylase n=1 Tax=Nannochloropsis sal... [more]
W7T4S9_9STRA1.840e-1859.02AB hydrolase-1 domain-containing protein n=1 Tax=N... [more]
A0A1Z5JID7_FISSO3.140e-1846.97AB hydrolase-1 domain-containing protein n=1 Tax=F... [more]
A0A1Z5K4M5_FISSO3.170e-1846.97AB hydrolase-1 domain-containing protein n=1 Tax=F... [more]
A0A7S2LG03_9STRA5.900e-1849.23GPI inositol-deacylase n=1 Tax=Leptocylindrus dani... [more]
B7FX54_PHATC1.020e-1746.27Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S4K5P4_9STRA1.060e-1750.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3XW86_HETAK1.500e-1655.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20460contigL-elsbetiae_contig20460:175..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7FTL3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha beta-Hydrolases superfamily protein
EggNOG OGs2QS8K@2759,COG1075@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-06_008670.1
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.9016824-CDS-L-elsbetiae_contig20460:174..2501622815843.9016824-CDS-L-elsbetiae_contig20460:174..250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20460 175..250 +
1691683140.6580927-CDS-L-elsbetiae_contig20460:174..2501691683140.6580927-CDS-L-elsbetiae_contig20460:174..250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20460 175..250 +
1622815843.9154494-CDS-L-elsbetiae_contig20460:767..9221622815843.9154494-CDS-L-elsbetiae_contig20460:767..922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20460 768..922 +
1691683140.6706593-CDS-L-elsbetiae_contig20460:767..9221691683140.6706593-CDS-L-elsbetiae_contig20460:767..922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20460 768..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20460.6165.1prot_L-elsbetiae_contig20460.6165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20460 175..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20460.6165.1

>prot_L-elsbetiae_contig20460.6165.1 ID=prot_L-elsbetiae_contig20460.6165.1|Name=mRNA_L-elsbetiae_contig20460.6165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
PPPPPLLLVLPFRTYETVCGEGDTMGDSCVPLVYAHLEGAEQVTLEGVFH
SVDKPDEWYGAEGVVDRWLSAVAQELG
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mRNA from alignment at L-elsbetiae_contig20460:175..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20460.6165.1 ID=mRNA_L-elsbetiae_contig20460.6165.1|Name=mRNA_L-elsbetiae_contig20460.6165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=748bp|location=Sequence derived from alignment at L-elsbetiae_contig20460:175..922+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGCCGCCGCCCCTGCTGCTGGTGTTGCCCTTCAGGACCTACGAGAC CGTCTGCGGGGAGGGAGATACCATGGGTGAGAGAGGCAACGAGGGCGCGT GGTCCGCCCATTATTGCTGCCCCGACAGGTTTTGTTGGTGCCTGTCGGGC GGTTGGGAAGGATCAGTTAGTTGTTGCTTGGGCCGAGAGTTGTTGCCGTA TCGGACGCGGCGTTTTGTTGGGGTAATAGCAGCGGAAATTAAACCATTAG ACCAGTCAGTACTGACTGATCTAATGGTTCAATTTCCGCTTCTATAAAAG TTAGTCGTGGGGGTTCATTTCAATTTCCGCTTCTATAGGGTGCATGGCGA AGGAGCGCCCGGCGAAAGATCCCGCAACCCGCCGCTCCATGCCCCTGATA TATGTGTGTGTACCGCCTCCTCTGCGAACGTCACGGCAAACACCAAATAT AAACAAGGCGCTTGCGTGTACAAATGGTACACAGCATACGCATGTCCTAT AGATAAACGTATGTACGTACCCCACCTCCGCCCCCGTCGCCTCCCGCCAC CTGTCCACTATTGTGTCCTTCCTGCTGCTTTGACGCGCAATAGGCGACTC TTGCGTGCCGCTGGTGTACGCGCACCTGGAGGGGGCCGAACAGGTCACAT TGGAAGGCGTTTTTCACTCTGTCGACAAGCCCGACGAGTGGTACGGCGCG GAGGGGGTCGTGGACCGCTGGCTGTCTGCGGTGGCGCAGGAGCTGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20460:175..922+

>mRNA_L-elsbetiae_contig20460.6165.1 ID=mRNA_L-elsbetiae_contig20460.6165.1|Name=mRNA_L-elsbetiae_contig20460.6165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig20460:175..922+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGCCGCCGCCCCTGCTGCTGGTGTTGCCCTTCAGGACCTACGAGAC
CGTCTGCGGGGAGGGAGATACCATGGCCGCCGCCGCCGCCCCTGCTGCTG
GTGTTGCCCTTCAGGACCTACGAGACCGTCTGCGGGGAGGGAGATACCAT
GGGCGACTCTTGCGTGCCGCTGGTGTACGCGCACCTGGAGGGGGCCGAAC
AGGTCACATTGGAAGGCGTTTTTCACTCTGTCGACAAGCCCGACGAGTGG
TACGGCGCGGAGGGGGTCGTGGACCGCTGGCTGTCTGCGGTGGCGCAGGA
GCTGGGCGCGACTCTTGCGTGCCGCTGGTGTACGCGCACCTGGAGGGGGC
CGAACAGGTCACATTGGAAGGCGTTTTTCACTCTGTCGACAAGCCCGACG
AGTGGTACGGCGCGGAGGGGGTCGTGGACCGCTGGCTGTCTGCGGTGGCG
CAGGAGCTGGGC
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