mRNA_L-elsbetiae_contig20432.6156.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20432.6156.1
Unique NamemRNA_L-elsbetiae_contig20432.6156.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20432.6156.1 vs. uniprot
Match: A0A6H5KQV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-10
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   43 SAEARIQELKGRQNLKINPVTLGAGDVSLPSPA-PFSPGTDWDLARGLAPSPACGSAYDDDYGDGGDGPTGRRRSGMV 273
            +AEARIQEL+ RQ ++  PVT  A  +S+PSP  P +PGTDWDLA+G+APSP               GP GRRR+ M+
Sbjct:  481 TAEARIQELRDRQGVEATPVTFPAS-MSMPSPGGPVTPGTDWDLAQGIAPSP---------------GPNGRRRTLMI 542
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20432.6156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQV5_9PHAE1.100e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20432contigL-elsbetiae_contig20432:1083..1804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC-type lectin
Ec32 orthologEc-20_002710.2
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.1481626-CDS-L-elsbetiae_contig20432:1082..12361622815843.1481626-CDS-L-elsbetiae_contig20432:1082..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20432 1083..1236 +
1691683140.1482155-CDS-L-elsbetiae_contig20432:1082..12361691683140.1482155-CDS-L-elsbetiae_contig20432:1082..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20432 1083..1236 +
1622815843.1586049-CDS-L-elsbetiae_contig20432:1607..18041622815843.1586049-CDS-L-elsbetiae_contig20432:1607..1804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20432 1608..1804 +
1691683140.1571324-CDS-L-elsbetiae_contig20432:1607..18041691683140.1571324-CDS-L-elsbetiae_contig20432:1607..1804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20432 1608..1804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20432.6156.1prot_L-elsbetiae_contig20432.6156.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20432 1083..1804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20432.6156.1

>prot_L-elsbetiae_contig20432.6156.1 ID=prot_L-elsbetiae_contig20432.6156.1|Name=mRNA_L-elsbetiae_contig20432.6156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
GFSTKPHSASEGRISAEARIQELKGRQNLKINPVTLGAGDVSLPSPAPFS
PGTDWDLARGLAPSPACGSAYDDDYGDGGDGPTGRRRSGMVDPSSGVVPA
GQASRKHRSQRPRGDED
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mRNA from alignment at L-elsbetiae_contig20432:1083..1804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20432.6156.1 ID=mRNA_L-elsbetiae_contig20432.6156.1|Name=mRNA_L-elsbetiae_contig20432.6156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=722bp|location=Sequence derived from alignment at L-elsbetiae_contig20432:1083..1804+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTTAGCACGAAGCCGCACTCCGCCTCAGAGGGCCGGATCTCCGCAGA
GGCGCGCATCCAGGAGCTGAAGGGACGCCAGAATCTCAAGATCAATCCCG
TGACGCTAGGGGCTGGTGACGTCTCCCTGCCGTCGCCGGCGCCCTTTTCT
CCGGGTGAGAAGTAGAGCACGTGTCGTTGCGGTTGTTGTTGTTGGTGTTG
TCACTGCTGCTGTTCATGGTGTCTGTTAGTGTGGTCGTTGTTGTTGTTGC
TGCTATTGTTGTTGTTGTTGTTTCTGTGGTTGTTGCTGCCGTTTGTTTGG
TTTGCTTGTCTGCCGTCCTCTCAAGGGCAGAAAAGGCAGCAGAAGGTTGG
TCGAAGTGCGCACGCAAAAACCGGCCGAGCCACCAAAAAACAGTACGGGG
TTATTGGGTGTGGCACCCTTTTTCCTTCCTCCGCGCCGTCCGTCCGTCCG
TCTGCTCATCTGTTTTATCCATTCATCCGTTCTTTCTTTCTCTTTTCGCT
TATCTTATATCTCTATTCCCCGCAGGCACGGACTGGGACCTCGCCCGGGG
CCTTGCGCCGTCCCCGGCGTGCGGGAGCGCGTACGACGACGATTACGGCG
ACGGCGGCGACGGCCCCACCGGGCGCCGGCGGTCCGGCATGGTGGACCCG
TCCTCGGGCGTCGTCCCCGCCGGGCAGGCCTCCAGGAAGCACCGGTCGCA
GCGGCCCCGGGGAGATGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20432:1083..1804+

>mRNA_L-elsbetiae_contig20432.6156.1 ID=mRNA_L-elsbetiae_contig20432.6156.1|Name=mRNA_L-elsbetiae_contig20432.6156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig20432:1083..1804+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTTAGCACGAAGCCGCACTCCGCCTCAGAGGGCCGGATCTCCGCAGA
GGCGCGCATCCAGGAGCTGAAGGGACGCCAGAATCTCAAGATCAATCCCG
TGACGCTAGGGGCTGGTGACGTCTCCCTGCCGTCGCCGGCGCCCTTTTCT
CCGGGGTTTTAGCACGAAGCCGCACTCCGCCTCAGAGGGCCGGATCTCCG
CAGAGGCGCGCATCCAGGAGCTGAAGGGACGCCAGAATCTCAAGATCAAT
CCCGTGACGCTAGGGGCTGGTGACGTCTCCCTGCCGTCGCCGGCGCCCTT
TTCTCCGGGCACGGACTGGGACCTCGCCCGGGGCCTTGCGCCGTCCCCGG
CGTGCGGGAGCGCGTACGACGACGATTACGGCGACGGCGGCGACGGCCCC
ACCGGGCGCCGGCGGTCCGGCATGGTGGACCCGTCCTCGGGCGTCGTCCC
CGCCGGGCAGGCCTCCAGGAAGCACCGGTCGCAGCGGCCCCGGGGAGATG
AGGACGCACGGACTGGGACCTCGCCCGGGGCCTTGCGCCGTCCCCGGCGT
GCGGGAGCGCGTACGACGACGATTACGGCGACGGCGGCGACGGCCCCACC
GGGCGCCGGCGGTCCGGCATGGTGGACCCGTCCTCGGGCGTCGTCCCCGC
CGGGCAGGCCTCCAGGAAGCACCGGTCGCAGCGGCCCCGGGGAGATGAGG
AC
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