mRNA_L-elsbetiae_contig2040.6142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2040.6142.1
Unique NamemRNA_L-elsbetiae_contig2040.6142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A6H5JW83_9PHAE (MMtag domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW83_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 1.380e-111
Identity = 183/209 (87.56%), Postives = 189/209 (90.43%), Query Frame = 1 
Query:    1 MSGKAYRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQAEMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHIPSLTLKERELERLKRERERKEGGLTEESLVEIVDYEKEQRDLAAAKAAGS----VEAGANRKRLKEEKR 615
            M  K YRVGGTRGGQDQFKW+DVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGG DAARAQAEMEKARVKQLDEDLLNEALGLAPR +RTQQ ELS ADKKQLLEKG T D DGMDTER+SGLGAGPAK HEHIPSLTLKERELERLKRERERKEGGLTEESLVEIVDYEKEQRDLAA KAA +    V  G++RK LKEEKR
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGADAARAQAEMEKARVKQLDEDLLNEALGLAPRKVRTQQLELSKADKKQLLEKGNTVDGDGMDTERISGLGAGPAKLHEHIPSLTLKERELERLKRERERKEGGLTEESLVEIVDYEKEQRDLAAVKAAANPGVAVSGGSSRKSLKEEKR 209
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: D8LC81_ECTSI (MMtag domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC81_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.400e-93
Identity = 146/160 (91.25%), Postives = 149/160 (93.12%), Query Frame = 1 
Query:    1 MSGKAYRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQAEMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHIPSLTLKERELERLKRERERK 480
            M  K YRVGGTRGGQDQFKW+DVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGG DAARAQAEMEKARVKQLDEDLLNEALGLAPR +RTQQ ELS ADKKQLLEKG T D DGMDTERVSGLGAGPAK HEHIPSLTLKERELERLKRERER+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGADAARAQAEMEKARVKQLDEDLLNEALGLAPRKVRTQQLELSKADKKQLLEKGTTVDGDGMDTERVSGLGAGPAKLHEHIPSLTLKERELERLKRERERR 160
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A4D9CNJ9_9STRA (MMtag domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNJ9_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.460e-40
Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGE---GGVDAARAQAEMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHIPS-LTLKERELERLK 462
            YR GGTRGGQD+FKW+DVK + +RE+YLGHSL APVGRWQ+GKDL W+ K G+   G  +   AQ + E A +++ DE+++N ALG+AP+     +S L  ++ KQLL KG++ +RD +  ERV G+GA PA  HEH+P  L++ ERE+ER+K
Sbjct:    9 YRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLIWYTKAGKVKSGEAEDPEAQRQREVAEIRRRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLS-ERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMK 160
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A7S2DE77_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DE77_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.040e-39
Identity = 81/165 (49.09%), Postives = 111/165 (67.27%), Query Frame = 1 
Query:    4 SGKAYRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKK---GEGGVDAARAQAEMEKAR-----VKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHIPSLTLKERELERLKRERE 474
            +GK YR GG RGGQDQF+W+DVKGD +RE+YLGHS+ APVGRWQ+GKD+ W+ +K    +  + A   +   +  R     VK L+ED+L+E+LGLAP+  R   + L   + +QL+ KG   +RD +D ERV GLGAG ++ HEH+P  TL E+EL R  +E E
Sbjct:    8 TGKNYREGGCRGGQDQFRWEDVKGDAYRESYLGHSINAPVGRWQKGKDILWYTRKQGQAKENITATLKRPAEDSRRAEILAVKALEEDMLSESLGLAPKRRRNNSTALEEQEVRQLIAKG-EMERDDVDVERVEGLGAGASRGHEHMPKKTLVEKELARRAKEAE 171
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A2P4XPU4_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPU4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.760e-39
Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQA-EMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGP--AKHHEHIPSLTLKERELERL 459
            YR+GGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +    + RA+A + E A  KQ DEDL+NEALG+AP+     +  LS ++ K+LL++G  A+RDGMD ERV GLGA P  A+  E  P  TL ER  ++L
Sbjct:    8 YRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK----SQRAEALQAELALAKQRDEDLMNEALGIAPKKRHEPREGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAERYKDQL 153
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: G4YNR6_PHYSP (MMtag domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNR6_PHYSP)

HSP 1 Score: 149 bits (375), Expect = 3.920e-39
Identity = 82/146 (56.16%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQA-EMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHI--PSLTLKER 444
            YRVGGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +    + RA+A + E A  KQ DEDL+NEALG+AP+        LS ++ K+LL++G  A+RDGMD ERV GLGA P +    +  P  TL ER
Sbjct:    8 YRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKTNK----SQRAEALQAELALAKQRDEDLMNEALGIAPKRRHEPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAAGFVTAPKRTLAER 148
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: W2QYV0_PHYPN (MMtag domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QYV0_PHYPN)

HSP 1 Score: 154 bits (388), Expect = 6.800e-39
Identity = 87/151 (57.62%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQA-EMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGP--AKHHEHIPSLTLKERELERL 459
            YRVGGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +    + RA+A + E A  KQ DEDL+NEALG+APR  R     LS ++ K+LL++G  A+RDGMD ERV GLGA P  A+  E  P  TL ER  ++L
Sbjct:    8 YRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK----SQRAEALQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAERYKDQL 153
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A3R7J9M4_9STRA (MMtag domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9M4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.010e-38
Identity = 83/150 (55.33%), Postives = 104/150 (69.33%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQAEMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGP--AKHHEHIPSLTLKERELERL 459
            YRVGGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +   + A+A  + E A  KQ DED++NEALG+AP+        LS ++ K+LL++G  A+RDGMD ER+ GLGA P  A   E  P  TL ER  +RL
Sbjct:    8 YRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKASK--TERAKA-LQSELAMAKQRDEDIMNEALGIAPKRRHEPVEGLSASEMKELLKRG-EAERDGMDVERIEGLGAAPVEAAGFEMGPKRTLAERYKDRL 153
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A080Z914_PHYPR (MMtag domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080Z914_PHYPR)

HSP 1 Score: 153 bits (386), Expect = 1.310e-38
Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQA-EMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGP--AKHHEHIPSLTLKERELERL 459
            YRVGGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +      RA+A + E A  KQ DEDL+NEALG+APR  R     LS ++ K+LL++G  A+RDGMD ERV GLGA P  A+  E  P  TL ER  ++L
Sbjct:    8 YRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK----LQRAEALQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAERYKDQL 153
[Close]
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Match: A0A2P4XTN7_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTN7_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.840e-38
Identity = 85/151 (56.29%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:   16 YRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWNKKGEGGVDAARAQA-EMEKARVKQLDEDLLNEALGLAPRMIRTQQSELSTADKKQLLEKGVTADRDGMDTERVSGLGAGP--AKHHEHIPSLTLKERELERL 459
            YR+GGTRGG DQFKW+DVK D +RENYLGHS+ APVGRWQ+GKDL W+ K  +      RA+A + E A  KQ DEDL+NEALG+AP+     +  LST++ K+LL++G  A+RDGMD ERV GLGA P  A+  E  P  TL ER  ++L
Sbjct:    8 YRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK----LQRAEALQAELALAKQRDEDLMNEALGIAPKKRHEPREGLSTSEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFEMGPKRTLAERYKDQL 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2040.6142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW83_9PHAE1.380e-11187.56MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LC81_ECTSI1.400e-9391.25MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CNJ9_9STRA3.460e-4052.29MMtag domain-containing protein n=4 Tax=Monodopsid... [more]
A0A7S2DE77_9STRA2.040e-3949.09Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A2P4XPU4_9STRA3.760e-3955.63T-complex protein 1 subunit zeta n=1 Tax=Phytophth... [more]
G4YNR6_PHYSP3.920e-3956.16MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
W2QYV0_PHYPN6.800e-3957.62MMtag domain-containing protein n=10 Tax=Phytophth... [more]
A0A3R7J9M4_9STRA1.010e-3855.33MMtag domain-containing protein n=3 Tax=Phytophtho... [more]
A0A080Z914_PHYPR1.310e-3857.62MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
A0A2P4XTN7_9STRA2.840e-3856.29T-complex protein 1 subunit zeta n=1 Tax=Phytophth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2040contigL-elsbetiae_contig2040:4692..9219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue2.3e-77
Seed eggNOG ortholog2880.D8LC81
Preferred nameC1orf35
KEGG koko:K09498,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503,GO:0101002,GO:1904813
EggNOG free text desc.Kinase phosphorylation protein
EggNOG OGsKOG4520@1,KOG4520@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko03400,ko04147
Ec32 ortholog descriptionKinase phosphorylation domain
Ec32 orthologEc-20_004770.1
Exons5
Model size1551
Cds size1551
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2040.6142.1prot_L-elsbetiae_contig2040.6142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2040 4692..9219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.200681-CDS-L-elsbetiae_contig2040:4691..57461622815842.200681-CDS-L-elsbetiae_contig2040:4691..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 4692..5746 -
1691683139.5970562-CDS-L-elsbetiae_contig2040:4691..57461691683139.5970562-CDS-L-elsbetiae_contig2040:4691..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 4692..5746 -
1622815842.2163405-CDS-L-elsbetiae_contig2040:6053..61511622815842.2163405-CDS-L-elsbetiae_contig2040:6053..6151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 6054..6151 -
1691683139.607737-CDS-L-elsbetiae_contig2040:6053..61511691683139.607737-CDS-L-elsbetiae_contig2040:6053..6151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 6054..6151 -
1622815842.2285807-CDS-L-elsbetiae_contig2040:6542..66801622815842.2285807-CDS-L-elsbetiae_contig2040:6542..6680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 6543..6680 -
1691683139.616146-CDS-L-elsbetiae_contig2040:6542..66801691683139.616146-CDS-L-elsbetiae_contig2040:6542..6680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 6543..6680 -
1622815842.2416701-CDS-L-elsbetiae_contig2040:7918..80391622815842.2416701-CDS-L-elsbetiae_contig2040:7918..8039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 7919..8039 -
1691683139.62515-CDS-L-elsbetiae_contig2040:7918..80391691683139.62515-CDS-L-elsbetiae_contig2040:7918..8039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 7919..8039 -
1622815842.2542684-CDS-L-elsbetiae_contig2040:9080..92191622815842.2542684-CDS-L-elsbetiae_contig2040:9080..9219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 9081..9219 -
1691683139.6340637-CDS-L-elsbetiae_contig2040:9080..92191691683139.6340637-CDS-L-elsbetiae_contig2040:9080..9219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2040 9081..9219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2040.6142.1

>prot_L-elsbetiae_contig2040.6142.1 ID=prot_L-elsbetiae_contig2040.6142.1|Name=mRNA_L-elsbetiae_contig2040.6142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=517bp
MSGKAYRVGGTRGGQDQFKWDDVKGDVHRENYLGHSLLAPVGRWQRGKDL
KWWNKKGEGGVDAARAQAEMEKARVKQLDEDLLNEALGLAPRMIRTQQSE
LSTADKKQLLEKGVTADRDGMDTERVSGLGAGPAKHHEHIPSLTLKEREL
ERLKRERERKEGGLTEESLVEIVDYEKEQRDLAAAKAAGSVEAGANRKRL
KEEKRAKKREKKEKKRAKKEKKRAKKKLKRAKEEAESGGRQHAAQDNAGV
DKRDRLPYSSRGRAGPPGGDERQIDSKAPTKGAVRDTRGSDHGQQRHRAG
STERDHRRGGTGGNAGNARASDRRNSQRDGGHGRIDSRERHRNREEERGR
RDSHERRRPQATSRGSRSPVSRSQVAHRKEEGWGTRDTSDQGRRQERSHQ
RLEHQRSGRSDGDRADRARRQRSVSSGSSSSGSSSSSNSSSGSSSASANL
AAGEKRGRSRSRSPDNRKARNLTGTRNGVRGGDTQGRSREIPRARSRDRS
PRTRGIGHSTRSRSRSR
back to top

mRNA from alignment at L-elsbetiae_contig2040:4692..9219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2040.6142.1 ID=mRNA_L-elsbetiae_contig2040.6142.1|Name=mRNA_L-elsbetiae_contig2040.6142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4528bp|location=Sequence derived from alignment at L-elsbetiae_contig2040:4692..9219- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGCAAGGCTTACCGTGTGGGTGGCACTCGCGGTGGGCAAGACCA
GTTCAAATGGGACGATGTCAAAGGCGATGTCCACCGTGAAAACTACCTGG
GGCACAGTCTTCTAGCACCTGTGGGCCGGTGGCAACGAGGTAAACGGACA
TGATGAATACAAACGTGCTAAAATACAAAAGCTTTAATTGGTGCAAAGCA
TACCGTAGGTGACACAAGATACCACACCCCCCTGGACAGATTTTTAAAGC
TCGACTCCTCCCCAGCAAGAAGAATCTCAGTGCCGAAAGGGGGTGGCGTC
GGAAAGATCTAGTCGAGGGCTGTCCGAAAATGTGTCGCTTGGTGCTGGTA
TACCCTCTTTGTTACGGAGCAATGGAGCTCTAAAAGTTGGCCCATGGGGT
GTGGTATATTGTGTCACCTACGGCGGTAGCGCTGCTGTTCCTTGTTATTT
AGCACACAGCAGACAGACTGACAGGCCGGATCCATTGATTGTGTTACCCC
CCTCGAATGCAAACAGAGTGGCGAAGTTCGGTGGAAGCGCATCTATCATT
GTTTTCGATGAGGCTGGAGTTAGACCGGAAGCGGCGTGTGTTTATCCAAG
TAGTCGATTCGAATGCCAGCAACGGCCACCTGTTGTTCTCTACAACAGAG
TAGAGAACCACGGCAGTCAACTACTTGCGGAGGCAGGTTCTCCTGCTGCA
GTCGTTGCGAGCCATGTTGAAGCACAAAGATGCTGACATCGACGAAGCTT
GTGCCCAAATAAATGTAGTCTATCTACAGGTATGTACTTCGGAAGGTGGA
TGCGGTGCAACACAGAAAAGTGTTGCAGAGGCACACGAAACACGAAAGCA
AGAACCAGGGACTTGTCGTATGCGCGCTTAAAGTAAAACGGTCGCTTTTA
TTCGTATGCACGGCGCAACGCTTGTGCAACCTCCGTACACAAGACAGGGT
TCTCTCTCGCGGTGTAATATTATATTGAACCCATCGAGGAAAATAACACA
TGTACATGATATCGGTTAGCATAGTATCGGTGCATATTGAGACGCCACTT
CTCTCGGACACGTCCACTTTCACTTTGGCGGAGCACTGGCGCAGTTCAGA
AGGCGTCCTAAATCCATTTACCATTTCTATCAGCGGCCGTGAACATCTCC
GTTTTTGTGCACAACCAAATTAACGCACAGGCAAGGATCTGAAGTGGTGG
AACAAAAAGGGGGAAGGGGGCGTGGACGCTGCCCGTGCTCAAGCTGAGAT
GGAAAAGGCCCGCGTGAAGCAACTCGATGAAGATCTTCTCAACGAAGCCC
TGTGAGAACGGGGGTAGGTGTAGTAGTGATGATAGAATTCACAACCACTC
GGGTTGCTGGGGGCTCCGTGCAATGCAAAGTGTCACAAGGGTTTACGCAG
ACAGGCCTTTTTTCTCTTCAGCCGCAGCAGTTTTTTTTCGCCGAGCTCAC
AGCAGAGTTACCACCTTTGCACACGACGATACTCCTCACACAGGTCGCAG
CTTGCTGTAAAACTTTCAGGAGGCCTGACGTATGTCATGTTCTACGTCGG
CGTGGAGGTTTTATACCTTAGTTTTGCCCTGAATTCGAGGAATGCTGCGT
CGTCACGGCTAAAAGATGCCAGGTTGCAGCTGCTTTTTTGGCTCATTTTC
TTGCCTCCGACAGCGAACTTCACACGCTTGTGGGCCATCAAAGGAGTTCG
CGAAATCACTCGGTACTTCGGCACAGTGGAGGAATGTACACAAAGATGGC
AAAGACGCTTGGAATAATTTGGGATCGCGGGTGCGACGGTCACACCAGCG
AACACCTATTTTTATACAGGGGCGACCAGCACGTTACACGAACCTACCTC
CAATTTTGTTAACAGTCCTCAAACCGCCTCTGAATTTGACCGTCATCGCT
GTGTGGGCCGCCAAAAACGCGCCCCAAAAAGAATTTCGACGGTACCGTGC
TGTAGAGGCATCTCAACAGATTCTTGTGATGGTAAGAGTAATTTTGGATC
GCCACTACAGATGGAGTTGTCGAGGAATAAGTGCCCGGCCCTATTATGGC
TAAGCGGCCGATCAGGGGCGACGCCGTTTCGTACTTCGTGAAGAAAAAAT
CGAGAAAAGGTCTGTACGGAGCCCCCAGCAACCCGAGTGCAACCCCCATC
GCATCGCACGGCGTTGACTCTGTTACCTTGAAAGGTATCCTCTGTTGCCT
TGAAAGGTATCAAAGGGAGGGTAGTTGCAAAGGGCCGGCCGCGTGGCATG
CTCTGAGCACACCGCCTACCGGTACTCGTTTGGTTTTGTGTACATCAGAG
GTAAGTCTACGGTACGTGTTAACTTGGGGTAGATCTAGCGTTTCGTGTCG
TGGCTCGCAGCACGGCATGCTTCACCAGGCACATCGCCTCGGCGCGAGCC
CTTGCTACACCGCTGCATGGGCAATGATGCATTGAGCCGCCGTTGCACGT
GGTACTCACGCCACGCCTTCCGCCACCCTACCGCGCACCTTCGCGCGGAT
GGCCCACCCTCGCAAACAATCTACTGCTTTTGCTGCCAGGGGTCTCGCGC
CGAGGATGATTCGCACGCAGCAATCGGAGCTGAGTACGGCAGACAAGAAG
CAGCTCTTGGAGAAAGGGGTCACCGCAGACCGAGACGGCATGGACACCGA
AAGGGTTTCGGGCCTTGGAGCAGGACCGTGAGTGACGAGGCTGAAAACGC
AGTTTTTAGAATGCTTTGCACGAACGACGTTCTCTTTTTTTCTCGTCAGC
AAAACAAATCCTTTGTGGAGCTGATGTAGGCACCCACCCCACGCACACGG
GTTCCCAATGGTGGCCGGAAGTCACCACAAAGGCTCACCATTCATTCCCA
GCCGCATAGATACCACACAAAAAAAATGCTCGGTGTAATCTTCGTGCAGC
GAACGGGAGCGACCGATGAACACGTGTTAAAAGGATGGGTCTGTGTATGA
CCAAGTTTTCGCCACAATATACCGCAGCAGTGCTCACAGATGTGCTGACA
TCTCTTTTGTGTCTAGATTTTCAACGTCGATGCCTCGATGCTACTGCTGT
CGTGTGAATGATCCTCAGCGCCAAGCACCACGAGCATATCCCCTCTCTGA
CCCTCAAGGAGCGGGAGCTGGAGAGGCTCAAGCGTGAACGCGAACGCAAG
GAAGGCGGGCTTACCGGTGAGCAACGGAGCCTGGTTCGATACACCTCGCG
CAGAGAAACGGCACCATTTTAGCCCAGTTTTACGAGCAGTTTTGAATCTC
GCTCTTTCGGCGACGGCCCATCTGTTGCTCTTATCTATATCGGTTGCGCC
CACTACTACTGTACCTTCGAAGCGTGTCAAGTGCCGAAGGGTACTTTCCC
CCAATTCGCTACGTTGTGGGGTTGGGGTTGGTAAACACGATACCATGACA
CGGCACCCCTTCGAGACTCACCTCGAATCGTGTGGGTCTCGTCGTCATGT
TTGTCTCGCCTTTACTATCACAGAGGAAAGCCTAGTGGAAATCGTGGACT
ACGAGAAAGAGCAGCGAGACCTGGCTGCGGCGAAGGCCGCGGGCAGCGTG
GAAGCGGGCGCCAACCGGAAGCGCCTCAAGGAGGAGAAGCGGGCCAAGAA
GCGCGAGAAGAAGGAGAAGAAGCGCGCCAAGAAGGAGAAGAAGCGAGCGA
AGAAAAAGCTCAAGAGAGCCAAAGAGGAGGCCGAAAGCGGCGGGCGGCAA
CACGCGGCGCAGGACAATGCCGGTGTCGACAAGAGAGACCGCCTCCCCTA
CAGCAGCCGAGGCCGGGCGGGGCCCCCTGGTGGCGACGAGAGGCAAATCG
ACTCCAAGGCACCAACCAAAGGTGCCGTCCGTGATACCAGGGGTAGCGAT
CACGGCCAGCAGCGCCACAGAGCGGGTAGCACGGAGAGAGACCACAGGAG
AGGAGGGACAGGCGGCAACGCGGGCAACGCAAGAGCGAGTGATCGGAGGA
ACAGCCAGCGAGATGGGGGCCATGGAAGAATCGACAGCAGAGAGAGGCAC
AGGAACAGGGAGGAGGAACGGGGTAGAAGGGACTCCCATGAGCGGCGTAG
ACCCCAAGCTACCAGCCGAGGAAGTAGGAGCCCCGTTTCGAGGAGCCAGG
TGGCGCATAGGAAGGAGGAGGGATGGGGGACGCGGGATACGAGCGATCAA
GGCCGCCGACAAGAAAGGAGCCACCAAAGGTTGGAGCACCAGCGTTCGGG
ACGGAGTGACGGCGACAGAGCAGACCGCGCGAGGAGACAGCGGTCGGTTA
GCAGCGGTAGCAGCAGCAGCGGGAGCAGCAGCAGCAGCAACAGCAGCAGC
GGGAGCAGTAGCGCAAGTGCCAACTTAGCCGCTGGCGAGAAACGTGGCCG
CAGCCGCAGCCGTAGCCCTGACAACAGAAAGGCCAGGAACCTCACGGGCA
CTCGCAATGGCGTGCGCGGTGGAGACACTCAGGGAAGATCCCGGGAAATA
CCTCGTGCCAGGTCGCGTGACAGATCACCGCGCACTAGAGGCATCGGGCA
CAGCACCCGTAGTCGGAGCCGGAGTAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2040:4692..9219-

>mRNA_L-elsbetiae_contig2040.6142.1 ID=mRNA_L-elsbetiae_contig2040.6142.1|Name=mRNA_L-elsbetiae_contig2040.6142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3102bp|location=Sequence derived from alignment at L-elsbetiae_contig2040:4692..9219- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGCAAGGCTTACCGTGTGGGTGGCACTCGCGGTGGGCAAGACCA
GTTCAAATGGGACGATGTCAAAGGCGATGTCCACCGTGAAAACTACCTGG
GGCACAGTCTTCTAGCACCTGTGGGCCGGTGGCAACGAGATGTCTGGCAA
GGCTTACCGTGTGGGTGGCACTCGCGGTGGGCAAGACCAGTTCAAATGGG
ACGATGTCAAAGGCGATGTCCACCGTGAAAACTACCTGGGGCACAGTCTT
CTAGCACCTGTGGGCCGGTGGCAACGAGGCAAGGATCTGAAGTGGTGGAA
CAAAAAGGGGGAAGGGGGCGTGGACGCTGCCCGTGCTCAAGCTGAGATGG
AAAAGGCCCGCGTGAAGCAACTCGATGAAGATCTTCTCAACGAAGCCCTG
CAAGGATCTGAAGTGGTGGAACAAAAAGGGGGAAGGGGGCGTGGACGCTG
CCCGTGCTCAAGCTGAGATGGAAAAGGCCCGCGTGAAGCAACTCGATGAA
GATCTTCTCAACGAAGCCCTGGGTCTCGCGCCGAGGATGATTCGCACGCA
GCAATCGGAGCTGAGTACGGCAGACAAGAAGCAGCTCTTGGAGAAAGGGG
TCACCGCAGACCGAGACGGCATGGACACCGAAAGGGTTTCGGGCCTTGGA
GCAGGACCGGGTCTCGCGCCGAGGATGATTCGCACGCAGCAATCGGAGCT
GAGTACGGCAGACAAGAAGCAGCTCTTGGAGAAAGGGGTCACCGCAGACC
GAGACGGCATGGACACCGAAAGGGTTTCGGGCCTTGGAGCAGGACCCGCC
AAGCACCACGAGCATATCCCCTCTCTGACCCTCAAGGAGCGGGAGCTGGA
GAGGCTCAAGCGTGAACGCGAACGCAAGGAAGGCGGGCTTACCGCGCCAA
GCACCACGAGCATATCCCCTCTCTGACCCTCAAGGAGCGGGAGCTGGAGA
GGCTCAAGCGTGAACGCGAACGCAAGGAAGGCGGGCTTACCGAGGAAAGC
CTAGTGGAAATCGTGGACTACGAGAAAGAGCAGCGAGACCTGGCTGCGGC
GAAGGCCGCGGGCAGCGTGGAAGCGGGCGCCAACCGGAAGCGCCTCAAGG
AGGAGAAGCGGGCCAAGAAGCGCGAGAAGAAGGAGAAGAAGCGCGCCAAG
AAGGAGAAGAAGCGAGCGAAGAAAAAGCTCAAGAGAGCCAAAGAGGAGGC
CGAAAGCGGCGGGCGGCAACACGCGGCGCAGGACAATGCCGGTGTCGACA
AGAGAGACCGCCTCCCCTACAGCAGCCGAGGCCGGGCGGGGCCCCCTGGT
GGCGACGAGAGGCAAATCGACTCCAAGGCACCAACCAAAGGTGCCGTCCG
TGATACCAGGGGTAGCGATCACGGCCAGCAGCGCCACAGAGCGGGTAGCA
CGGAGAGAGACCACAGGAGAGGAGGGACAGGCGGCAACGCGGGCAACGCA
AGAGCGAGTGATCGGAGGAACAGCCAGCGAGATGGGGGCCATGGAAGAAT
CGACAGCAGAGAGAGGCACAGGAACAGGGAGGAGGAACGGGGTAGAAGGG
ACTCCCATGAGCGGCGTAGACCCCAAGCTACCAGCCGAGGAAGTAGGAGC
CCCGTTTCGAGGAGCCAGGTGGCGCATAGGAAGGAGGAGGGATGGGGGAC
GCGGGATACGAGCGATCAAGGCCGCCGACAAGAAAGGAGCCACCAAAGGT
TGGAGCACCAGCGTTCGGGACGGAGTGACGGCGACAGAGCAGACCGCGCG
AGGAGACAGCGGTCGGTTAGCAGCGGTAGCAGCAGCAGCGGGAGCAGCAG
CAGCAGCAACAGCAGCAGCGGGAGCAGTAGCGCAAGTGCCAACTTAGCCG
CTGGCGAGAAACGTGGCCGCAGCCGCAGCCGTAGCCCTGACAACAGAAAG
GCCAGGAACCTCACGGGCACTCGCAATGGCGTGCGCGGTGGAGACACTCA
GGGAAGATCCCGGGAAATACCTCGTGCCAGGTCGCGTGACAGATCACCGC
GCACTAGAGGCATCGGGCACAGCACCCGTAGTCGGAGCCGGAGTAGGAGG
AAAGCCTAGTGGAAATCGTGGACTACGAGAAAGAGCAGCGAGACCTGGCT
GCGGCGAAGGCCGCGGGCAGCGTGGAAGCGGGCGCCAACCGGAAGCGCCT
CAAGGAGGAGAAGCGGGCCAAGAAGCGCGAGAAGAAGGAGAAGAAGCGCG
CCAAGAAGGAGAAGAAGCGAGCGAAGAAAAAGCTCAAGAGAGCCAAAGAG
GAGGCCGAAAGCGGCGGGCGGCAACACGCGGCGCAGGACAATGCCGGTGT
CGACAAGAGAGACCGCCTCCCCTACAGCAGCCGAGGCCGGGCGGGGCCCC
CTGGTGGCGACGAGAGGCAAATCGACTCCAAGGCACCAACCAAAGGTGCC
GTCCGTGATACCAGGGGTAGCGATCACGGCCAGCAGCGCCACAGAGCGGG
TAGCACGGAGAGAGACCACAGGAGAGGAGGGACAGGCGGCAACGCGGGCA
ACGCAAGAGCGAGTGATCGGAGGAACAGCCAGCGAGATGGGGGCCATGGA
AGAATCGACAGCAGAGAGAGGCACAGGAACAGGGAGGAGGAACGGGGTAG
AAGGGACTCCCATGAGCGGCGTAGACCCCAAGCTACCAGCCGAGGAAGTA
GGAGCCCCGTTTCGAGGAGCCAGGTGGCGCATAGGAAGGAGGAGGGATGG
GGGACGCGGGATACGAGCGATCAAGGCCGCCGACAAGAAAGGAGCCACCA
AAGGTTGGAGCACCAGCGTTCGGGACGGAGTGACGGCGACAGAGCAGACC
GCGCGAGGAGACAGCGGTCGGTTAGCAGCGGTAGCAGCAGCAGCGGGAGC
AGCAGCAGCAGCAACAGCAGCAGCGGGAGCAGTAGCGCAAGTGCCAACTT
AGCCGCTGGCGAGAAACGTGGCCGCAGCCGCAGCCGTAGCCCTGACAACA
GAAAGGCCAGGAACCTCACGGGCACTCGCAATGGCGTGCGCGGTGGAGAC
ACTCAGGGAAGATCCCGGGAAATACCTCGTGCCAGGTCGCGTGACAGATC
ACCGCGCACTAGAGGCATCGGGCACAGCACCCGTAGTCGGAGCCGGAGTA
GG
back to top