mRNA_L-elsbetiae_contig20399.6135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20399.6135.1
Unique NamemRNA_L-elsbetiae_contig20399.6135.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20399.6135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20399contigL-elsbetiae_contig20399:1278..2208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815841.316391-CDS-L-elsbetiae_contig20399:1277..14301622815841.316391-CDS-L-elsbetiae_contig20399:1277..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20399 1278..1430 +
1691683138.9140148-CDS-L-elsbetiae_contig20399:1277..14301691683138.9140148-CDS-L-elsbetiae_contig20399:1277..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20399 1278..1430 +
1622815841.3275304-CDS-L-elsbetiae_contig20399:2045..22071622815841.3275304-CDS-L-elsbetiae_contig20399:2045..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20399 2046..2207 +
1691683138.9247053-CDS-L-elsbetiae_contig20399:2045..22071691683138.9247053-CDS-L-elsbetiae_contig20399:2045..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20399 2046..2207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20399.6135.1prot_L-elsbetiae_contig20399.6135.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20399 1278..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20399.6135.1

>prot_L-elsbetiae_contig20399.6135.1 ID=prot_L-elsbetiae_contig20399.6135.1|Name=mRNA_L-elsbetiae_contig20399.6135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
SSHIIPAGRGGPPEKLGRVGRRWEADGWRGTSAWRSRCRRARRLLWLVVA
ESLFARYQRRPRFQRGLCQRLCTYVFSVVPVRAGRRQRVGAGTATSDREG
AVRRQ
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mRNA from alignment at L-elsbetiae_contig20399:1278..2208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20399.6135.1 ID=mRNA_L-elsbetiae_contig20399.6135.1|Name=mRNA_L-elsbetiae_contig20399.6135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=931bp|location=Sequence derived from alignment at L-elsbetiae_contig20399:1278..2208+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCTCACATCATCCCAGCGGGACGTGGAGGGCCGCCTGAAAAGCTTGG
CCGTGTCGGTCGACGATGGGAGGCGGATGGATGGAGGGGGACTAGCGCCT
GGCGCTCGCGATGCAGAAGGGCGAGGCGGCTGCTGTGGCTAGTGGTGGCC
GAGGTGAGAGTTTACTCGTTACCGTGCACACCGGATGGTTGTAAACTGAC
AGTACGAACCCTGAACCCTCCACACTACGGGGTACGGAATATGGTATATT
TATATTTTCGAGGAGCAGAGCAAGCGGTGATGTATGTTACCCATGGCTGT
TTGTTCTCGCCACATGCGATCCTGCGGCCGAGCTCTCCCCGCACAGTGGA
AACCCTGCCGGTCTCGGACACACCGGCTCGCATGCATACGGGGCAGACAC
GAAACGGCGGGCGCCGACTGCTGGAGAGATTGGTGCGGTTTTAGCGCTAA
TCTATCGCCTGTATTTTGCACCGCCGCTTTCATCTCATCGTCACCCAATG
ATTGTGAAGCTGTTTTTTTTGCCATGCCTCCTACTACCGCAAGCTCCAAG
GACAAGATCGTGATTGGTTAGCTCGTCGCCGCTCTCGAAACACGCGTTCC
CCCCATTGAAAACGACAGCAGCCTAAACCGATCGGTTCGGATTGTTTATG
GCTGCACCAGTGCGTGTATGTGTTTTCGTCCTGACTTTCACCATCCCAAA
GCCGAGTGAAAACTAACACCGCGTTGACAAACCGATTTGGCGCTCTCCCT
CGCCCTTCTACGCTTCAGTCACTCTTTGCGAGATACCAGCGGAGGCCACG
ATTCCAGCGGGGCTTGTGTCAGAGGCTGTGTACATACGTGTTCTCCGTCG
TTCCCGTGCGTGCCGGTCGAAGACAACGAGTGGGAGCTGGGACGGCGACC
TCGGATCGAGAAGGTGCCGTACGCAGGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20399:1278..2208+

>mRNA_L-elsbetiae_contig20399.6135.1 ID=mRNA_L-elsbetiae_contig20399.6135.1|Name=mRNA_L-elsbetiae_contig20399.6135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig20399:1278..2208+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCTCACATCATCCCAGCGGGACGTGGAGGGCCGCCTGAAAAGCTTGG
CCGTGTCGGTCGACGATGGGAGGCGGATGGATGGAGGGGGACTAGCGCCT
GGCGCTCGCGATGCAGAAGGGCGAGGCGGCTGCTGTGGCTAGTGGTGGCC
GAGTCATCTCACATCATCCCAGCGGGACGTGGAGGGCCGCCTGAAAAGCT
TGGCCGTGTCGGTCGACGATGGGAGGCGGATGGATGGAGGGGGACTAGCG
CCTGGCGCTCGCGATGCAGAAGGGCGAGGCGGCTGCTGTGGCTAGTGGTG
GCCGAGTCACTCTTTGCGAGATACCAGCGGAGGCCACGATTCCAGCGGGG
CTTGTGTCAGAGGCTGTGTACATACGTGTTCTCCGTCGTTCCCGTGCGTG
CCGGTCGAAGACAACGAGTGGGAGCTGGGACGGCGACCTCGGATCGAGAA
GGTGCCGTACGCAGGCAGTCACTCTTTGCGAGATACCAGCGGAGGCCACG
ATTCCAGCGGGGCTTGTGTCAGAGGCTGTGTACATACGTGTTCTCCGTCG
TTCCCGTGCGTGCCGGTCGAAGACAACGAGTGGGAGCTGGGACGGCGACC
TCGGATCGAGAAGGTGCCGTACGCAGGCAG
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