mRNA_L-elsbetiae_contig2037.6127.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2037.6127.1
Unique NamemRNA_L-elsbetiae_contig2037.6127.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.370e-23
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:   20 MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIEDEDDLPENRPLKPTLVR 229
            ++LR+ACDACHRMKRKCDG  PC RC RRSR C YSYKQKSGPPKGSKRKLI  ++DL ENR  +P L++
Sbjct:  205 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQSRPKLIQ 274
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BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.730e-23
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:   20 MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIEDEDDLPENRPLKPTLVR 229
            ++LR+ACDACHRMKRKCDG  PC RC RRSR C YSYKQKSGPPKGSKRKLI  ++DL ENR  +P L++
Sbjct:  181 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQSRPKLIQ 250
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BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: A0A5N6U4X0_9EURO (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Aspergillus avenaceus TaxID=36643 RepID=A0A5N6U4X0_9EURO)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-6
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:   26 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRK 169
            LR AC+ CHRMK +C G  PC+RC     DC YS+  K G PKGS+ K
Sbjct:   27 LRRACNLCHRMKLRCSGTSPCSRCHDAGSDCVYSFAAKIGKPKGSRNK 74
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BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: D7G645_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G645_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.390e-5
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 2 
Query:   26 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIEDEDD 190
            LR  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP    KR+ +   DD
Sbjct:   53 LRTTCDACTIGKIKCDGGHPCKRCQRRGSECVYREKKRCGP----KRRKLSSRDD 103
[Close]
BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: A0A6H5J8L2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.670e-5
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 2 
Query:   26 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIEDEDD 190
            LR  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP    KR+ +   DD
Sbjct:  179 LRTTCDACTIGKIKCDGGHPCKRCQRRGSECVYREKKRCGP----KRRKLSSRDD 229
[Close]
BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Match: D7G644_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G644_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 9.320e-5
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 2 
Query:   29 RAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIEDEDD 190
            R  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP    KR+ +   DD
Sbjct:   56 RTTCDACTLGKIKCDGGHPCRRCQRRGSECVYREKKRCGP----KRRKLSSRDD 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2037.6127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LM00_ECTSI6.370e-2371.43Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE6.730e-2371.43Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A5N6U4X0_9EURO1.330e-654.17Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G645_ECTSI4.390e-549.09Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5J8L2_9PHAE4.670e-549.09Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G644_ECTSI9.320e-548.15Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2037contigL-elsbetiae_contig2037:12033..12666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.0
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog36630.CADNFIAP00005731
KEGG koko:K21546
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
EggNOG OGs20MNE@147545,2EPHI@1,2SSPP@2759,3ADWM@33154,3P8QN@4751,3QZ8H@4890,3SBGT@5042
COG Functional cat.K
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size635
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.489616-UTR-L-elsbetiae_contig2037:12032..120511622815840.489616-UTR-L-elsbetiae_contig2037:12032..12051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2037 12033..12051 +
1691683138.3547487-UTR-L-elsbetiae_contig2037:12032..120511691683138.3547487-UTR-L-elsbetiae_contig2037:12032..12051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2037 12033..12051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.5037203-CDS-L-elsbetiae_contig2037:12051..126661622815840.5037203-CDS-L-elsbetiae_contig2037:12051..12666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2037 12052..12666 +
1691683138.3669088-CDS-L-elsbetiae_contig2037:12051..126661691683138.3669088-CDS-L-elsbetiae_contig2037:12051..12666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2037 12052..12666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2037.6127.1prot_L-elsbetiae_contig2037.6127.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2037 12052..12666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2037.6127.1

>prot_L-elsbetiae_contig2037.6127.1 ID=prot_L-elsbetiae_contig2037.6127.1|Name=mRNA_L-elsbetiae_contig2037.6127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRK
LIEDEDDLPENRPLKPTLVRHADTVGSWTPGGRSGSNGNPNSNPNSNEVA
EGRVGDDYGNHNPSSSSALIEAAQQYSQVGAQQFSQAPTQQSVPAPAQHS
VPVSAHGFGQVSSPLVGPSPEARAAAAAAVAASRMNALAPAPPPLTAAGL
RPSYM
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mRNA from alignment at L-elsbetiae_contig2037:12033..12666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2037.6127.1 ID=mRNA_L-elsbetiae_contig2037.6127.1|Name=mRNA_L-elsbetiae_contig2037.6127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=634bp|location=Sequence derived from alignment at L-elsbetiae_contig2037:12033..12666+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCTCCACCAGCAGTACGATGCTCCTCCGCGCGGCTTGCGACGCCTGCC
ATCGGATGAAGCGCAAGTGCGACGGAAAGCACCCCTGCACCCGCTGCGAG
CGGCGCAGCCGCGACTGCTTCTACAGCTACAAGCAAAAGTCTGGCCCACC
CAAGGGCAGCAAGCGCAAGCTTATCGAGGACGAGGACGACCTCCCCGAGA
ACAGGCCCCTCAAGCCTACCCTTGTGCGCCACGCCGATACCGTAGGGTCC
TGGACTCCTGGAGGCAGAAGCGGCAGCAACGGCAATCCCAACAGCAATCC
CAACAGCAACGAGGTGGCCGAGGGGCGCGTCGGCGACGACTACGGGAACC
ACAACCCCTCCTCTTCCTCCGCGCTGATCGAAGCTGCCCAGCAGTACAGT
CAGGTGGGTGCTCAGCAATTCAGCCAAGCCCCTACTCAGCAATCAGTCCC
GGCGCCCGCTCAGCATTCCGTTCCGGTATCCGCTCACGGATTCGGTCAGG
TGTCTTCGCCGCTAGTGGGGCCGTCCCCTGAAGCCAGGGCAGCGGCTGCG
GCCGCCGTCGCGGCTAGCAGGATGAACGCGCTGGCTCCAGCCCCCCCCCC
TCTGACTGCCGCGGGTCTTCGTCCGTCCTACATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2037:12033..12666+

>mRNA_L-elsbetiae_contig2037.6127.1 ID=mRNA_L-elsbetiae_contig2037.6127.1|Name=mRNA_L-elsbetiae_contig2037.6127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig2037:12033..12666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCTCCGCGCGGCTTGCGACGCCTGCCATCGGATGAAGCGCAAGTG
CGACGGAAAGCACCCCTGCACCCGCTGCGAGCGGCGCAGCCGCGACTGCT
TCTACAGCTACAAGCAAAAGTCTGGCCCACCCAAGGGCAGCAAGCGCAAG
CTTATCGAGGACGAGGACGACCTCCCCGAGAACAGGCCCCTCAAGCCTAC
CCTTGTGCGCCACGCCGATACCGTAGGGTCCTGGACTCCTGGAGGCAGAA
GCGGCAGCAACGGCAATCCCAACAGCAATCCCAACAGCAACGAGGTGGCC
GAGGGGCGCGTCGGCGACGACTACGGGAACCACAACCCCTCCTCTTCCTC
CGCGCTGATCGAAGCTGCCCAGCAGTACAGTCAGGTGGGTGCTCAGCAAT
TCAGCCAAGCCCCTACTCAGCAATCAGTCCCGGCGCCCGCTCAGCATTCC
GTTCCGGTATCCGCTCACGGATTCGGTCAGGTGTCTTCGCCGCTAGTGGG
GCCGTCCCCTGAAGCCAGGGCAGCGGCTGCGGCCGCCGTCGCGGCTAGCA
GGATGAACGCGCTGGCTCCAGCCCCCCCCCCTCTGACTGCCGCGGGTCTT
CGTCCGTCCTACATGATGCTCCTCCGCGCGGCTTGCGACGCCTGCCATCG
GATGAAGCGCAAGTGCGACGGAAAGCACCCCTGCACCCGCTGCGAGCGGC
GCAGCCGCGACTGCTTCTACAGCTACAAGCAAAAGTCTGGCCCACCCAAG
GGCAGCAAGCGCAAGCTTATCGAGGACGAGGACGACCTCCCCGAGAACAG
GCCCCTCAAGCCTACCCTTGTGCGCCACGCCGATACCGTAGGGTCCTGGA
CTCCTGGAGGCAGAAGCGGCAGCAACGGCAATCCCAACAGCAATCCCAAC
AGCAACGAGGTGGCCGAGGGGCGCGTCGGCGACGACTACGGGAACCACAA
CCCCTCCTCTTCCTCCGCGCTGATCGAAGCTGCCCAGCAGTACAGTCAGG
TGGGTGCTCAGCAATTCAGCCAAGCCCCTACTCAGCAATCAGTCCCGGCG
CCCGCTCAGCATTCCGTTCCGGTATCCGCTCACGGATTCGGTCAGGTGTC
TTCGCCGCTAGTGGGGCCGTCCCCTGAAGCCAGGGCAGCGGCTGCGGCCG
CCGTCGCGGCTAGCAGGATGAACGCGCTGGCTCCAGCCCCCCCCCCTCTG
ACTGCCGCGGGTCTTCGTCCGTCCTACATG
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