mRNA_L-elsbetiae_contig20357.6125.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20357.6125.1
Unique NamemRNA_L-elsbetiae_contig20357.6125.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: A0A2U3CBR0_HEIAB (Aldehyde-activating protein n=1 Tax=Heimdallarchaeota archaeon (strain B3-JM-08) TaxID=2012493 RepID=A0A2U3CBR0_HEIAB)

HSP 1 Score: 270 bits (690), Expect = 1.780e-91
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEIHENQVSV 423
            +KYS++CSC CVKLELQLPQVIASYNPRECDCSFCKKRSL YLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTV+IHE+QV V
Sbjct:    1 MKYSSNCSCVCVKLELQLPQVIASYNPRECDCSFCKKRSLRYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVDIHEDQVFV 141          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: F5ZET7_ALTNA (Glutathione-dependent formaldehyde-activating, GFA n=4 Tax=Alteromonas TaxID=226 RepID=F5ZET7_ALTNA)

HSP 1 Score: 131 bits (330), Expect = 1.110e-36
Identity = 67/139 (48.20%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTV--EIHEN 411
            + Y + CSC  V+++L LP+ I SY PRECDC FCK  SL Y+SD  GKL + +   +   KQGS+QA+FI CS C  VVAV + + +  KGAV A LF  +    +  + SPKLL+  ++R RW +LWLTV  EI EN
Sbjct:    1 MDYFSSCSCEAVRVKLSLPRSIESYQPRECDCDFCKHHSLAYISDPLGKLSVNSSASVNFLKQGSEQASFIQCSRCNQVVAVFYDAEKVKKGAVSATLFANRHSFNEYQTTSPKLLSSADRRERWGNLWLTVVLEISEN 139          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: A0A350P0T1_9ALTE (Aldehyde-activating protein n=2 Tax=Alteromonas TaxID=226 RepID=A0A350P0T1_9ALTE)

HSP 1 Score: 131 bits (330), Expect = 1.320e-36
Identity = 64/128 (50.00%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    7 YSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWL 390
            Y ++C C  VK+ L LP  I  Y  R CDC FC+   + Y+SD+ G L++ +   L Q KQGS+QA F  C +C DVVAVT     GLKGAV A LF     +G P+ VSPK L+P+EKRIRW S WL
Sbjct:    5 YLSNCLCGNVKISLSLPNSIEGYELRACDCEFCQSNRITYISDRGGSLLVASRAPLIQIKQGSEQATFWQCPSCKDVVAVTAMLNNGLKGAVNAQLFSRHLDLGVPVVVSPKFLSPKEKRIRWDSSWL 132          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: A0A839UHS7_9GAMM (CENP-V/GFA domain-containing protein n=1 Tax=Simiduia aestuariiviva TaxID=1510459 RepID=A0A839UHS7_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 9.940e-33
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 YSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEI 402
            Y  +C C  V   L LP+++  Y+PR+CDC FC  R + YLSD  G L I     L   +QGS QA F+SC +C  V+A TF + E   GAV A L + +  +G+ + VSPK+LTP +K  RW +LWLTV++
Sbjct:    4 YDGNCGCGKVTFSLSLPKLLHQYSPRKCDCDFCVARDIAYLSDPEGLLDIECSEPLDVQRQGSDQAEFVSCPHCKSVIAATFQAREKRVGAVNAALLQARSALGESMVVSPKVLTPAQKVARWQTLWLTVKM 135          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: A0A0D8DCL9_9GAMM (CENP-V/GFA domain-containing protein n=1 Tax=Thalassomonas viridans TaxID=137584 RepID=A0A0D8DCL9_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 2.670e-32
Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    4 KYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEIHEN 411
            +Y   CSC  V++ + LP+ +A+Y PR CDC FC  R++ YLS   G LVI +   L   +QGS QA+F++C+ C DV+A +  + +G+ GA+ A L  +   +  P +VSPKLL+  +K  RW S+WL V+++EN
Sbjct:    4 QYPGKCSCGNVEVTITLPEKLAAYAPRACDCDFCTARNIQYLSHPDGSLVINSATSLEVYRQGSNQADFLACNRCDDVIAASLKTGDGILGALNATLLSDYAMLKTPEAVSPKLLSAGDKVNRWRSVWLKVKVNEN 139          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: A0A8H9I864_9ALTE (CENP-V/GFA domain-containing protein n=3 Tax=Alteromonadaceae TaxID=72275 RepID=A0A8H9I864_9ALTE)

HSP 1 Score: 119 bits (298), Expect = 6.960e-32
Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEI 402
            + Y   C+C  VK+ L LP  +  Y PR CDC FC   ++ YLSD  GKL + +   +   +QGS+QA F  C +C DV+ V++    G+KGA+ ANL ++K ++   I+VSPK L+  EKR RW ++W+ +++
Sbjct:    1 MPYQASCNCDTVKMSLTLPNPLGHYQPRACDCDFCTALNVAYLSDTRGKLEVFSSGSIQVIQQGSEQALFAQCRHCADVLFVSYEFETGIKGAINANLLDDKHQLASVIAVSPKALSSTEKRERWLAVWMPLKV 134          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: UPI0018AB1986 (aldehyde-activating protein n=1 Tax=Reinekea sp. G2M2-21 TaxID=2788942 RepID=UPI0018AB1986)

HSP 1 Score: 118 bits (296), Expect = 1.360e-31
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTV 396
            ++Y  +CSC  VK+ ++LPQ I  Y  RECDC FC +  L Y+SD +G +       + Q KQGS QA F  CS+C D VAVT       +GAVV  LF  K K+   I+VSP+ L P+EK IRW+++W  V
Sbjct:    1 MEYQAECSCGQVKVSIRLPQPIEEYQARECDCDFCVRYGLAYISDANGTISFAPIQSMNQLKQGSGQATFWQCSHCTDFVAVTHDCNGVERGAVVKALFANKHKLKPSITVSPRQLQPKEKPIRWSAVWSRV 132          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: UPI001EF4DEF2 (hypothetical protein n=1 Tax=Psychrobium sp. MM17-31 TaxID=2917758 RepID=UPI001EF4DEF2)

HSP 1 Score: 117 bits (293), Expect = 4.880e-31
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    7 YSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEIH 405
            Y   C C  + L + LP+ +  Y PR CDC FC  R L YLS+ +G+L +  G      +QGS QA FI+CS+C  VV V   + +GL GA+ + +  E+ ++  P++VSPKLL P++K  RW   WL + I+
Sbjct:    4 YHGHCQCGDISLSISLPKPLDVYAPRRCDCDFCTSRQLTYLSEPAGQLALSVGGDYLVQQQGSGQAQFITCSSCDTVVTVALETSQGLIGALNSQMLAERERLASPLTVSPKLLAPQDKAQRWQENWLPLTIN 136          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: K6ZA60_9ALTE (Glutathione-dependent formaldehyde-activating, GFA n=2 Tax=Paraglaciecola polaris TaxID=222814 RepID=K6ZA60_9ALTE)

HSP 1 Score: 116 bits (290), Expect = 1.130e-30
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTV 396
            ++Y   C C  V+++L LP  + SY PR CDC FC  +   YLSD +G L +    +L    QGS+QA F  C  C +++ V+     G+KGAV A +F +K+ IG  + VSPK+L+P+EKR RW S+WLTV
Sbjct:    1 MEYIGACCCGEVQVKLTLPNSLHSYQPRACDCDFCMAQKTAYLSDLNGVLEVFHQHKLEGIYQGSEQAIFWQCKACHNLILVSCEFASGVKGAVNAGVFSQKYTIGSAVYVSPKMLSPQEKRERWQSVWLTV 132          
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Match: UPI0010A06BC0 (aldehyde-activating protein n=1 Tax=Ningiella ruwaisensis TaxID=2364274 RepID=UPI0010A06BC0)

HSP 1 Score: 114 bits (284), Expect = 1.000e-29
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKLVIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFEEKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEIHE 408
            + Y+  C C+ V+L + LPQV+++Y PR CDC FC++  L Y+SD  GK+ I++ + L   +QGS QA F+SC +C   VAV     E   GAV A       +  +PI VSPK  + +EK  RW  LW  + ++E
Sbjct:    2 ISYTGACLCNQVELHVHLPQVLSNYAPRACDCDFCRQNELTYISDPEGKIQIQSSISLRHERQGSNQAEFLSCRHCEQTVAVMLHLDERRIGAVNAQCLHSAEQFKEPIFVSPKTFSAQEKTKRWEQLWSPLTLNE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20357.6125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U3CBR0_HEIAB1.780e-9194.33Aldehyde-activating protein n=1 Tax=Heimdallarchae... [more]
F5ZET7_ALTNA1.110e-3648.20Glutathione-dependent formaldehyde-activating, GFA... [more]
A0A350P0T1_9ALTE1.320e-3650.00Aldehyde-activating protein n=2 Tax=Alteromonas Ta... [more]
A0A839UHS7_9GAMM9.940e-3344.70CENP-V/GFA domain-containing protein n=1 Tax=Simid... [more]
A0A0D8DCL9_9GAMM2.670e-3241.91CENP-V/GFA domain-containing protein n=1 Tax=Thala... [more]
A0A8H9I864_9ALTE6.960e-3240.30CENP-V/GFA domain-containing protein n=3 Tax=Alter... [more]
UPI0018AB19861.360e-3145.45aldehyde-activating protein n=1 Tax=Reinekea sp. G... [more]
UPI001EF4DEF24.880e-3140.60hypothetical protein n=1 Tax=Psychrobium sp. MM17-... [more]
K6ZA60_9ALTE1.130e-3043.94Glutathione-dependent formaldehyde-activating, GFA... [more]
UPI0010A06BC01.000e-2940.44aldehyde-activating protein n=1 Tax=Ningiella ruwa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20357contigL-elsbetiae_contig20357:1924..2349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score132.9
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog715451.ambt_15635
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione-dependent formaldehyde-activating
EggNOG OGs1NC41@1224,1SCYZ@1236,COG3791@1,COG3791@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.449424-CDS-L-elsbetiae_contig20357:1923..23491622815840.449424-CDS-L-elsbetiae_contig20357:1923..2349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20357 1924..2349 -
1691683138.338036-CDS-L-elsbetiae_contig20357:1923..23491691683138.338036-CDS-L-elsbetiae_contig20357:1923..2349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20357 1924..2349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20357.6125.1prot_L-elsbetiae_contig20357.6125.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20357 1924..2349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20357.6125.1

>prot_L-elsbetiae_contig20357.6125.1 ID=prot_L-elsbetiae_contig20357.6125.1|Name=mRNA_L-elsbetiae_contig20357.6125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
LKYSTDCSCSCVKLELQLPQVIASYNPRECDCSFCKKRSLIYLSDKSGKL
VIRTGLQLCQSKQGSKQANFISCSNCGDVVAVTFSSLEGLKGAVVANLFE
EKFKIGKPISVSPKLLTPEEKRIRWTSLWLTVEIHENQVSV*
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mRNA from alignment at L-elsbetiae_contig20357:1924..2349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20357.6125.1 ID=mRNA_L-elsbetiae_contig20357.6125.1|Name=mRNA_L-elsbetiae_contig20357.6125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig20357:1924..2349- (Laminarionema elsbetiae ELsaHSoW15)
TTGAAATATTCTACCGATTGCTCATGTAGCTGTGTAAAATTAGAACTCCA ATTACCTCAAGTAATTGCATCTTACAACCCACGAGAGTGCGATTGTAGTT TTTGTAAGAAACGCAGTTTAATATATCTTTCAGACAAATCAGGAAAACTT GTCATTAGGACTGGCTTACAACTCTGTCAATCCAAGCAAGGATCCAAGCA GGCAAATTTTATCAGTTGTTCAAATTGTGGTGATGTGGTTGCTGTTACTT TCTCCTCACTTGAAGGATTAAAAGGGGCGGTCGTAGCAAACTTATTTGAA GAAAAATTTAAAATAGGTAAACCTATTAGTGTTTCACCTAAACTGTTGAC TCCAGAAGAAAAACGCATAAGGTGGACGTCGCTATGGCTAACAGTTGAAA TCCATGAGAATCAAGTTTCTGTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20357:1924..2349-

>mRNA_L-elsbetiae_contig20357.6125.1 ID=mRNA_L-elsbetiae_contig20357.6125.1|Name=mRNA_L-elsbetiae_contig20357.6125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig20357:1924..2349- (Laminarionema elsbetiae ELsaHSoW15)
TTGAAATATTCTACCGATTGCTCATGTAGCTGTGTAAAATTAGAACTCCA
ATTACCTCAAGTAATTGCATCTTACAACCCACGAGAGTGCGATTGTAGTT
TTTGTAAGAAACGCAGTTTAATATATCTTTCAGACAAATCAGGAAAACTT
GTCATTAGGACTGGCTTACAACTCTGTCAATCCAAGCAAGGATCCAAGCA
GGCAAATTTTATCAGTTGTTCAAATTGTGGTGATGTGGTTGCTGTTACTT
TCTCCTCACTTGAAGGATTAAAAGGGGCGGTCGTAGCAAACTTATTTGAA
GAAAAATTTAAAATAGGTAAACCTATTAGTGTTTCACCTAAACTGTTGAC
TCCAGAAGAAAAACGCATAAGGTGGACGTCGCTATGGCTAACAGTTGAAA
TCCATGAGAATCAAGTTTCTGTTTGATTGAAATATTCTACCGATTGCTCA
TGTAGCTGTGTAAAATTAGAACTCCAATTACCTCAAGTAATTGCATCTTA
CAACCCACGAGAGTGCGATTGTAGTTTTTGTAAGAAACGCAGTTTAATAT
ATCTTTCAGACAAATCAGGAAAACTTGTCATTAGGACTGGCTTACAACTC
TGTCAATCCAAGCAAGGATCCAAGCAGGCAAATTTTATCAGTTGTTCAAA
TTGTGGTGATGTGGTTGCTGTTACTTTCTCCTCACTTGAAGGATTAAAAG
GGGCGGTCGTAGCAAACTTATTTGAAGAAAAATTTAAAATAGGTAAACCT
ATTAGTGTTTCACCTAAACTGTTGACTCCAGAAGAAAAACGCATAAGGTG
GACGTCGCTATGGCTAACAGTTGAAATCCATGAGAATCAAGTTTCTGTTT
GA
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