prot_L-elsbetiae_contig20352.6122.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig20352.6122.1
Unique Name	prot_L-elsbetiae_contig20352.6122.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	112

Homology

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.010e-72
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 0

Query:    1 GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKPSLNNRY 111
            GK+CG++CDNNR+YVSGLPTTITE DLVEKF+TIGIIARIRQ KRGYKDQWPFSVRIYKDD TGKPKGDCIIKYEEPNSAHAAL+WFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:   49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ-KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.940e-68
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 0

Query:    1 GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQ---QKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKPSLNNRY 111
            GK+CG++CDNNR+YVSGLPTTITE DLV+KF+TIGIIARIRQ    KRGYKDQWPFSVRIYKD  TGKPKGDCIIKYEEPNSAHAA++WFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:  233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 123 bits (308), Expect = 5.970e-33
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 0

Query:    2 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            + CG+ CDN+RIY+S LP  +   +L E F +IGI+ARI+Q KRGYKDQWP+S+++Y DD+ GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:  104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 123 bits (308), Expect = 1.130e-31
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 0

Query:    2 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            + CG+ CDN+RIY+S LP  +   +L E F +IGI+ARI+Q KRGYKDQWP+S+++Y DD+ GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:  203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 303

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 120 bits (301), Expect = 1.030e-30
Identity = 54/103 (52.43%), Postives = 79/103 (76.70%), Query Frame = 0

Query:    2 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            + CG+ CDN RIY+SGLP  + E +L E F  IG +AR++Q KRGYKDQWP++++IY+D++ GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:  200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 120 bits (301), Expect = 1.090e-30
Identity = 55/103 (53.40%), Postives = 79/103 (76.70%), Query Frame = 0

Query:    2 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            + CG+ CDN RIY+SGLP  + E +L E F  IG +ARI+Q KRGYKDQWP++++IY+D++ GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9)

HSP 1 Score: 120 bits (300), Expect = 1.930e-30
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 0

Query:    2 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            + CG+ CDN+RIY+S LP  +T  +L E F +IG +ARI+Q KRGYKDQWP+S++IY D+  G  KGD ++ YE+P++AH+A  +F+  DF+G KI VAMA K
Sbjct:  207 EHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ-KRGYKDQWPWSIKIYTDEK-GNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEK 307

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A2R5H0Z6_9STRA (RNA-binding protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0Z6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.930e-30
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = 0

Query:    9 DNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKP 105
            DN RIY+SGLP+  TE +L + F  +G+IAR ++QKRGY DQWP+ + IY DD  GKPKGD +I YE+PN+A +A ++F+G +FKG KI V  AAKP
Sbjct:  220 DNTRIYISGLPSDTTEQELADHFGGLGVIAR-KKQKRGYPDQWPYKITIYTDDQ-GKPKGDAVIGYEDPNAAQSAPEFFNGTEFKGCKINVESAAKP 314

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A176VKP4_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VKP4_MARPO)

HSP 1 Score: 118 bits (295), Expect = 3.050e-30
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 0

Query:    3 ECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            ECG+ CDN RIY+SGLP  +T  +L E F  IG +ARI+Q KRGYKDQWP++V+IY D+A GK KGD ++ YE+P++AH+A  +F+    +G KI V MA K
Sbjct:  142 ECGDTCDNTRIYISGLPLDVTVDELRELFGGIGQVARIKQ-KRGYKDQWPWNVKIYTDEA-GKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTMAEK 241

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BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: UPI000E6FE8CC (transcription initiation factor TFIID subunit 15b-like n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FE8CC)

HSP 1 Score: 121 bits (303), Expect = 3.370e-30
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 0

Query:    3 ECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 104
            +CG++CDN+RIY+S LP  +T  +L E F  IG IARI+Q KRGYKDQWP+++++Y DD+ GKPKGD ++ YE+P++AHAA  +++  + +G KI V MAAK
Sbjct:  316 KCGDNCDNSRIYISNLPLDVTTDELRELFGGIGQIARIKQ-KRGYKDQWPWNIKLYTDDS-GKPKGDGVLSYEDPSAAHAAGGFYNNHELRGNKISVTMAAK 415

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LIQ1_ECTSI	3.010e-72	91.89	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L8L8_9PHAE	9.940e-68	86.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A803KS81_CHEQI	5.970e-33	53.40	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A803LCU5_CHEQI	1.130e-31	53.40	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A9T0V1_PHYPA	1.030e-30	52.43	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A0A2K1JP98_PHYPA	1.090e-30	53.40	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
UPI000905CCC9	1.930e-30	53.40	transcription initiation factor TFIID subunit 15b-...	[more]
A0A2R5H0Z6_9STRA	1.930e-30	56.70	RNA-binding protein, putative n=1 Tax=Hondaea ferm...	[more]
A0A176VKP4_MARPO	3.050e-30	54.90	RRM domain-containing protein n=2 Tax=Marchantia p...	[more]
UPI000E6FE8CC	3.370e-30	53.92	transcription initiation factor TFIID subunit 15b-...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 12..100 e-value: 8.0E-9 score: 45.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..96 e-value: 1.4E-5 score: 24.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 11..104 score: 12.953
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..102 e-value: 4.6E-19 score: 70.4
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 4..108
IPR033109	RNA-binding protein EWS	PANTHER	PTHR23238:SF3	RNA-BINDING PROTEIN EWS	coord: 4..108
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig20352	contig	L-elsbetiae_contig20352:155..1409 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig20352.6122.1	mRNA_L-elsbetiae_contig20352.6122.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig20352 155..1409 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig20352.6122.1 ID=prot_L-elsbetiae_contig20352.6122.1|Name=mRNA_L-elsbetiae_contig20352.6122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQ
WPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVA
MAAKPSLNNRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034870	TET_fam
IPR033109	EWSR1
IPR035979	RBD_domain_sf