Homology
BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match:
D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)
HSP 1 Score: 288 bits (737), Expect = 7.000e-96
Identity = 162/241 (67.22%), Postives = 177/241 (73.44%), Query Frame = 1
Query: 1 SMDWSWSSEFGSKHDASRG-EVYMSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSELAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVAASSNPSKNGGGQGPTADWEGEPQEE----------------------------VGRQTAALSRVLLDLLRDESRGAARGDSPGGL 636
SMDWSW++EFG++HD S+G EVYMSLDVLN+VWTAEM+FLRDMYLLDADFFRFVWGLLQQ EAAGPATATLA HAGTKVAVE+VAHARAS+CV+PWCKRLS+LA AH HAADNVLALLA GRR+GS AGYLRELLVSCPRASTRLAFEHLAV AV ASSN V +QT+ALSRVLLDLL DES G+ARG S GGL
Sbjct: 3 SMDWSWNAEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGL 243
BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match:
A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)
HSP 1 Score: 283 bits (723), Expect = 1.930e-84
Identity = 162/241 (67.22%), Postives = 174/241 (72.20%), Query Frame = 1
Query: 1 SMDWSWSSEFGSKHDASRG-EVYMSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSELAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVAASSNPSKNGGGQGPTADWEGEPQEE----------------------------VGRQTAALSRVLLDLLRDESRGAARGDSPGGL 636
SMDWS SSEFG++HD S+G EVYMSLDVLN+VWTAEM+FLRDMYLLDADFFRFVWGLLQQ EAAGPATATLA HAGTKVAVE+VAHARAS+CV+PWCKRLS+LA AH HAADNVLALLA GRR+GS AGYLRELLVSCPR STRLAFEHLAV AV ASSN V +QT ALSRVLLDLL DES G+ARG S GGL
Sbjct: 2400 SMDWSLSSEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGL 2640
BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match:
A0A7S2RJQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ3_9STRA)
HSP 1 Score: 63.2 bits (152), Expect = 4.530e-8
Identity = 55/180 (30.56%), Postives = 74/180 (41.11%), Query Frame = 1
Query: 67 MSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQ---------------------QREAAGPATATL-----AVHAGTKVAVELVAHARASTCVSPWCKRLSELAE---------------------AHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVA 465
M+ V VW +AFL D + + D FRF+W ++ REA P L A G + V++VAHARA +CV WC +L LA+ A PH D +A L R S G+L ++LV CP S++ AF HL VA
Sbjct: 174 MTPAVQRAVWDESLAFLFDRHTFNVDHFRFLWHIVDCTIPAASPPRAGLRDKELVGSPREAPEPHHMELGACARATEVGLQFLVDVVAHARAKSCVPSWCGQLLSLAQQSEDVAKVALRLLTGEDAVARAFPHEGDTRVAPLDGARESR---GWLAQMLVLCPHDSSKDAFIHLITTLVA 350
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 7.00e-96 / Id = 67.22 Expect = 1.93e-84 / Id = 67.22 Expect = 4.53e-8 / Id = 30.56 Sequence D8LU89_ECTSI A0A6H5KTV6_9PHAE A0A7S2RJQ3_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-14_004090.1
Exons 4
Model size 636
Cds size 633
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815839.633892-UTR-L-elsbetiae_contig2033:12067..12070 1622815839.633892-UTR-L-elsbetiae_contig2033:12067..12070 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig2033 12068..12070 +
1691683137.81369-UTR-L-elsbetiae_contig2033:12067..12070 1691683137.81369-UTR-L-elsbetiae_contig2033:12067..12070 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig2033 12068..12070 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815839.6457958-CDS-L-elsbetiae_contig2033:12070..12105 1622815839.6457958-CDS-L-elsbetiae_contig2033:12070..12105 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 12071..12105 +
1691683137.8255608-CDS-L-elsbetiae_contig2033:12070..12105 1691683137.8255608-CDS-L-elsbetiae_contig2033:12070..12105 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 12071..12105 +
1622815839.6558495-CDS-L-elsbetiae_contig2033:12836..13029 1622815839.6558495-CDS-L-elsbetiae_contig2033:12836..13029 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 12837..13029 +
1691683137.8362875-CDS-L-elsbetiae_contig2033:12836..13029 1691683137.8362875-CDS-L-elsbetiae_contig2033:12836..13029 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 12837..13029 +
1622815839.6726773-CDS-L-elsbetiae_contig2033:13611..13758 1622815839.6726773-CDS-L-elsbetiae_contig2033:13611..13758 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 13612..13758 +
1691683137.8449156-CDS-L-elsbetiae_contig2033:13611..13758 1691683137.8449156-CDS-L-elsbetiae_contig2033:13611..13758 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 13612..13758 +
1622815839.6853027-CDS-L-elsbetiae_contig2033:14348..14606 1622815839.6853027-CDS-L-elsbetiae_contig2033:14348..14606 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 14349..14606 +
1691683137.8557272-CDS-L-elsbetiae_contig2033:14348..14606 1691683137.8557272-CDS-L-elsbetiae_contig2033:14348..14606 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2033 14349..14606 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2033.6115.1
>prot_L-elsbetiae_contig2033.6115.1 ID=prot_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MDWSWSSEFGSKHDASRGEVYMSLDVLNEVWTAEMAFLRDMYLLDADFFR FVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSE LAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAV AAVAASSNPSKNGGGQGPTADWEGEPQEEVGRQTAALSRVLLDLLRDESR GAARGDSPGGL back to top mRNA from alignment at L-elsbetiae_contig2033:12068..14606+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2033.6115.1 ID=mRNA_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2539bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:12068..14606+ (Laminarionema elsbetiae ELsaHSoW15)TCT ATGGACTGGAGCTGGAGCTCGGAGTTTGGCTCCAA GTGAGTGCTTGG
CTGCTGGTCGTGTGTTGGGTCAGTTTGCCTACAACCCGAGTCACAGCCGG
CGAGGAGCTTGAGAACGAGGATTGTGGGTTGGCTGGCCGATCTAGATACC
TACCGGTATTGGCGATGTTGCCCCCCCTGGGTTAACGGTTGTATGCATTC
AAGCCGTCACAGAACACATAGACATGTACTTGAAGTATCGTTTGGGGAGT
GGGAACTGGGGAAGTGGAATCGACTTCGGGTTCTGTCTATAAAGCAAGTG
TTGTCTATCCCTGTGGGCTTCCTGCCGGCTGCCCGTGTCTAGAAGCGTGT
AGCCTACCATCTTGCTTTGCCTCTCTCTTTCCTTCTTCGTTGTGTTTTTA
CCGTTATTTCAGCCGCGGGAGATCCAAGCAGCACCCGTTGGTCGCAAACT
TAAAACATAAGTAAATAAATAATGAAGATTCCTGGTACATCGCAAGAAGT
CCACGTCAGGGAAGAAAAACACGCCACCACAAAACCAAGAGTAATGAAGT
GCGCCCCCCCCCCCCCATGCATCTTTTGCTCGACAACGAAACACACTTAT
CTTGCAACAACGCGCAGCCGACTGTGTGTGTTTTGTCAAGGCCTCACCCA
CGCTTCGCTGTTTCAAGCCGCTATTATCTACCGTCGTGGCCTCACCCACC
CACCCACCCTTCCCTCTGTGCCTTTTCATCCCCTGTGCCCTTATCTACGA
CCCCGTCCCGGCCACCCAGACACGATGCCTCCCGGGGAGAAGTGTACATG
TCTCTGGACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGCG
AGACATGTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTGC
TCCAGCAGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCAT
GCGGGCACTAAG GTATATTGTGTGTGTGTGTTTCGGGTCCCCGAATCGAG
CGCGCCACCCGCCGGGTTGGTTGCCTGGCCGTTTCTGGGTGTGTTTCTTC
TGATTTAATTTCCGTTCGCATGTCCTTCCTGCCTGCGTTCTGCAGAAACG
GAACTTTACGTCCGTTCATGCTGCGTGCGTCGTGGTTGCCAGAGATCAGT
GGTAGTCGATGAGGTGTCTTCGTGCTTTTGGAGATTGAATTGCATACAAC
GAGGATGTCACTAGATAGATAGCGTCACCGCGATGGCGTGATATGTAGCC
GAGCCTCGCATTGTCGCTAGATAGATAGCGTCACCGCGATGGCGTGGTTT
GTAGCCGAGCCTCGCGTTCCCACTCTTTGGCAGCGGTGGTGGGAGATGCG
TCAACACGCCCTTTCTGCTGGCACAAGCTCACTCACTGCTTTCGTTGCGA
CCCTCAGTAGAGCGAGCACTTAAACAGCAGAGACCAAGCCCCTTTGGTCT
ACTCACACCTTGAACACCTGATGGAATCATACCACCACCAGCGCCAACGC
CACCGCCAACGTGTGTGATATGCACCTTCCCGAAACCTGGTAAGGTTGCC
GTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGTTTCGCCGTGGTG
CAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACGCAGCGGATAACG
TACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCTCAG GTGATGCGT
CTACAACGTGGAGAGGGTCACGTAGAGTGTGTAGCTAAACGATGCATCGG
ATCTCGTGGTGGGTGGGTGTGATTTGCATCGGGGCGCGCGGGTGCAGCTG
GCCGTGCATCTAGTACCCCAGTGGCAAGCAGAGACCTTGCCCGCCCATTC
ACGCCCGAGGCTAGATTGAACGTCCTGCTGAATCTCCCTTCGCCTTCGGC
GTTCACTTCCACCACTCCATCCACGGACTGCAGTTGTAAACAGGGCAAAA
CAAAAGTTCAAGTGGATATGAGCTCTCTGTATGTATGACGGTTTCATAGT
GGTGTATATGCCGGTATGAAGACGTCGCGGTTGACGTAGAATGTGTATTT
TTTCAGCTTCGGCGGCGTGCTGGTGTGGGTGTTGACAGCCACTGCTGTTG
CGAACACGCCATCACGTGGAGACGACGTACCGCCGTTTTCAAGACTTCAC
CTCGAAACTCACTTGCGATCGACCAATCCAAGTGCGTAGGTTGTTCAACC
CTACCGTTTCGCCTTCTCCCCTCCCTCCCTTCGTCCCAATGTCTTTGCCC
CTCTACCCACCTACCACGTATCTGTCCACAGGCCGGCTACCTGCGAGAAC
TCTTGGTGTCTTGCCCGCGAGCATCGACCCGCCTGGCCTTCGAGCACCTC
GCCGTAGCCGCCGTGGCTGCTTCGTCCAACCCCTCCAAGAACGGCGGCGG
GCAAGGGCCGACGGCCGACTGGGAGGGCGAGCCGCAGGAGGAGGTCGGCC
GTCAAACCGCGGCCCTGTCTCGAGTTCTGCTGGACCTCCTGCGGGACGAG
TCGCGCGGGGCGGCGCGCGGGGATTCCCCGGGGGGGCTG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2033:12068..14606+
>mRNA_L-elsbetiae_contig2033.6115.1 ID=mRNA_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:12068..14606+ (Laminarionema elsbetiae ELsaHSoW15) ATGGACTGGAGCTGGAGCTCGGAGTTTGGCTCCAAATGGACTGGAGCTGG AGCTCGGAGTTTGGCTCCAAACACGATGCCTCCCGGGGAGAAGTGTACAT GTCTCTGGACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGC GAGACATGTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTG CTCCAGCAGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCA TGCGGGCACTAAGACACGATGCCTCCCGGGGAGAAGTGTACATGTCTCTG GACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGCGAGACAT GTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTGCTCCAGC AGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCATGCGGGC ACTAAGGTTGCCGTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGT TTCGCCGTGGTGCAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACG CAGCGGATAACGTACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCT CAGGTTGCCGTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGTTTC GCCGTGGTGCAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACGCAG CGGATAACGTACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCTCAG GCCGGCTACCTGCGAGAACTCTTGGTGTCTTGCCCGCGAGCATCGACCCG CCTGGCCTTCGAGCACCTCGCCGTAGCCGCCGTGGCTGCTTCGTCCAACC CCTCCAAGAACGGCGGCGGGCAAGGGCCGACGGCCGACTGGGAGGGCGAG CCGCAGGAGGAGGTCGGCCGTCAAACCGCGGCCCTGTCTCGAGTTCTGCT GGACCTCCTGCGGGACGAGTCGCGCGGGGCGGCGCGCGGGGATTCCCCGG GGGGGCTGGCCGGCTACCTGCGAGAACTCTTGGTGTCTTGCCCGCGAGCA TCGACCCGCCTGGCCTTCGAGCACCTCGCCGTAGCCGCCGTGGCTGCTTC GTCCAACCCCTCCAAGAACGGCGGCGGGCAAGGGCCGACGGCCGACTGGG AGGGCGAGCCGCAGGAGGAGGTCGGCCGTCAAACCGCGGCCCTGTCTCGA GTTCTGCTGGACCTCCTGCGGGACGAGTCGCGCGGGGCGGCGCGCGGGGA TTCCCCGGGGGGGCTG back to top