prot_L-elsbetiae_contig20243.6092.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig20243.6092.1
Unique Nameprot_L-elsbetiae_contig20243.6092.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length170
Homology
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BLAST of mRNA_L-elsbetiae_contig20243.6092.1 vs. uniprot
Match: D7FZN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-11
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:   10 SGRSRKPVDRFVDNFVVVDKKKPPKIAKGKGTAFKDFSTWRRSCGALAPVGSCVGCTGSLLGARSRYRNAYLGQVLNFSGIPNEKPLHKVTLGLEGQTRTSCVKWKLGKLAELLDFLEV 128
            SGR RK +DR  DN+     KK  +IAKG G+A +D        G L      +G   +LL      +     Q+L FSGIP+++ L KVT  L+ +      KW +  + E +D LEV
Sbjct:  240 SGRKRKSIDRLGDNYAAAQDKKSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSK------KWPVPMVKEAMDLLEV 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20243.6092.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZN4_ECTSI1.610e-1135.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20243contigL-elsbetiae_contig20243:41..2304 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20243.6092.1mRNA_L-elsbetiae_contig20243.6092.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig20243 2..2535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig20243.6092.1 ID=prot_L-elsbetiae_contig20243.6092.1|Name=mRNA_L-elsbetiae_contig20243.6092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MDGPGKRKPSGRSRKPVDRFVDNFVVVDKKKPPKIAKGKGTAFKDFSTWR
RSCGALAPVGSCVGCTGSLLGARSRYRNAYLGQVLNFSGIPNEKPLHKVT
LGLEGQTRTSCVKWKLGKLAELLDFLEVGFGMLSRSVQSTPSWMNVVEVS
RGKARCASGCKNSTGMKTR*
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