mRNA_L-elsbetiae_contig2024.6090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2024.6090.1
Unique NamemRNA_L-elsbetiae_contig2024.6090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2024.6090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2024contigL-elsbetiae_contig2024:12970..17662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size331
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2024.6090.1prot_L-elsbetiae_contig2024.6090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2024 13066..17662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.9432147-UTR-L-elsbetiae_contig2024:12969..130651622815836.9432147-UTR-L-elsbetiae_contig2024:12969..13065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2024 12970..13065 +
1691683135.9200103-UTR-L-elsbetiae_contig2024:12969..130651691683135.9200103-UTR-L-elsbetiae_contig2024:12969..13065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2024 12970..13065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.9536219-CDS-L-elsbetiae_contig2024:13065..130671622815836.9536219-CDS-L-elsbetiae_contig2024:13065..13067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 13066..13067 +
1691683135.9345849-CDS-L-elsbetiae_contig2024:13065..130671691683135.9345849-CDS-L-elsbetiae_contig2024:13065..13067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 13066..13067 +
1622815836.9644263-CDS-L-elsbetiae_contig2024:14262..144391622815836.9644263-CDS-L-elsbetiae_contig2024:14262..14439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 14263..14439 +
1691683135.9429858-CDS-L-elsbetiae_contig2024:14262..144391691683135.9429858-CDS-L-elsbetiae_contig2024:14262..14439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 14263..14439 +
1622815836.975591-CDS-L-elsbetiae_contig2024:17607..176621622815836.975591-CDS-L-elsbetiae_contig2024:17607..17662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 17608..17662 +
1691683135.9509168-CDS-L-elsbetiae_contig2024:17607..176621691683135.9509168-CDS-L-elsbetiae_contig2024:17607..17662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2024 17608..17662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2024.6090.1

>prot_L-elsbetiae_contig2024.6090.1 ID=prot_L-elsbetiae_contig2024.6090.1|Name=mRNA_L-elsbetiae_contig2024.6090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MVVSAAPRRAPRPPRLPNFSRTSGSAPRMKVWVRLQDTIIFSLADAECDM
PPHPLHGVASIILTRERAEQERPSLCTP
back to top

mRNA from alignment at L-elsbetiae_contig2024:12970..17662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2024.6090.1 ID=mRNA_L-elsbetiae_contig2024.6090.1|Name=mRNA_L-elsbetiae_contig2024.6090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4693bp|location=Sequence derived from alignment at L-elsbetiae_contig2024:12970..17662+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCAACGGAGGAGCAACACAGCAGTGGTCACCTCGGCGGGGCCATCCTA
TCCCAGCACGGGTGCTCCCGCTCCAAGTGCGGTCTCATGATCGCCGATGT
GAGTCGCAGAGTGCATGTAGTTTTGCTGCGGGGGGTATATATGTGCCAGC
GTGCACCGCTTCTCGCCCCCAACAGTGGGAACGTGTGTGTACTCGTTGGT
TGCAGCTGCGCAGTAGGGGGGAAGGTGGAGGGAGCAGGGAAAACACCGTT
TTTTGTGTATAATGTCAATTGGTTTGACTGCTATTTCGCCGTTTTTTTGT
CCTCCGTGCATACATATATAATAAAAAAAACATACATAGCTCGGCTGTTG
TTGTTTGTCATAAATATACTGGTCTTATTACGCTGACAGCGAAGAAGATT
CCTGTCTGCTGAACACCGACCCGTTTCGCGAAGACCACTCCCTCACGGGA
AAATATGCTCAACCCTGTACGCTGAATATCATCCCCCAAAGACTCTCTGT
GTCTTGGATCTTCAGTTTTTGTGCTCTGTGGACCCTTTTCGGATCCATTT
TGTTTCTTTTCATTTTTCAGTAGTTTATGCCCTTTTCAGGGTAAGTTCCC
CTGTGATCACGGGAATCGACCGCGTCAGTGTTGGATTAGTACGGACTCAT
GGAGGTGTACCGGATAGAGAGATCGTAACACTTTTTTAATGTGAAGACAA
CACACACAAGCAGACAGTAAGACGCCCTGGTTTACATTTTTGCTTTTTTT
TCGGTGCGGATTAATGATGTTGGTTGTACATACTACTGCTGCTAAACCCG
GGGCGGCGAAAGAGGGTTAAATAGCGTGTTTACAACAGCAGTCCCGCCGG
AAATAATGTTTTTTTCACAGGCTACGTATGTTCATACATATGCGCAGACG
GCTGACATTTAGCACCTACCGTAGGTGACACAAGATACCACACCCCCTGG
ACATGTTGTCAAAGCTCGATTCCTCCCCAGCAAGAAGAGCGTCATGCCGA
AAAGGGGTGGCGTTGCAAAGATCTCGTCAAGGGCTGTCTGAAAATGTGTC
GTTTTGCGCTGGCACCCTCCTCGTTACGGAGTAATGGAGCTCTAAAAGTC
GGTCCGGGGTGTGTGGTATCTTGTGTCGCCTACGGTATTTATGTACTACA
TACGTGTAATCATGAAGGAAAAGACAAGAGCGAAGAAGAGAAATGTTCAG
AGCCCCCCCCTCGTCTCCGCTGCTCGCTCTTTCGAATCCCCCGGCGTATT
GCCCCCTTTTTACGGATGTATGTACCTGCGGCTTGGGTCGCAGGGTTGTC
AGCGCTGCTCCGAGAAGGGCGCCGCGCCCACCGCGGCTGCCTAATTTCTC
CCGCACGAGTGGTTCTGCTCCGAGGATGAAGGTCTGGGTTCGACTGCAGG
ACACGATCATATTTAGCCTCGCCGACGCCGAGTGCGACATGCCCCCCCAC
CCCCTGCATGGAGTAGCGAGGTGAGGTTGCCGCGAGGGTCCCCTCCTCGC
TTGTAGCATGCATGCACCGGCGCCCCTCTCTCGCCGGTGCTCCTCTCTAC
ACCGCCGACCCTCGTTGTCGTTCGTTTTTCCTCGCCTTTAGCTGGAGGGC
GGGCAGGTCCGTGGCATGAACAATCAGTGTTAGTGTTTGCTGCCCTCCCG
TTGTCACCCAGACCTGCAGCCGGATCCCATCGAACCATGCTGCCCCGAGT
GGGGACAGAAGAGCAGTGTTGCGGTTCTCATGTTGTCACCCAGTCGGACC
TGCAATCGATCTCATCGAACCATTTTGTTTTTTTTTTCCTTCACATTTAT
TTCGAGTGCTCGATGGGCTCCTTGTCACGAGGACATCTTGCCAGAGTACT
GAACCGTGGTCACACAGAAGGGTTGCTTTCCCCGAGGCCACCACCCCCCC
CGTCTGCGGTGCTTGCCTAAGATTTTTGTCACGAGAAGGGTTCCGCCGTC
CCTTTCCCTCGTCGACGGTGAGGTTGAAGTTTGCTGCCCAAATTTTCGTT
TGAGTCAGAACCACAGTGTTGCTGTTCTCAAGTCATCACCCAGCCGGACC
TGCAGTCGATCTCATCGAACCATGCTGTTCCGATTGATGTGCAAATGAAC
CGCTGTGTTGCTGTTCTCAAGCTATCACCCAGCCGGACCTGCAATCGATC
TCATTTGAGCCATGCTGCCCCAATTTTCGTTTGAGTCAGAAGGCAGTGTT
GCTTTTTCTCAAGGTATCACCCAGCTGATCGATATCGTAAAATCGTGCTG
CCCCGATTGGTGTGCAATGGAACCGCTGTGTTGCTGTTCTCAAGCTGTCA
CCCAGCAGTCGATTTACCCGAACCATGCTGCCCCGATCGGCGTGAAACAG
AAAGCAGTGTTGCTGTTTATTGCTCGAAGTTATCACCCAGCTGCACCTAC
AATCGATACCGTAAAATCGTGCTCTGCCCCGAGTGGCATGCGTGAACAGC
CGCCGTGTTTTGGCTTCTCACGTTAGTCACCCGGCCAGACCTGCAGTTTG
ATCTCAATCGAAGTCGTTGTGCCCCCCGGGGGGTGATAATGGCACGCCGA
GATCGACGAGAGCAGACACGGTAAGTGAGAAGCAGGTACACATGTTCCTA
TTATACATTGAAAGCGATTTCGTTAGTAAATAACAGAAGTACTTCGACTT
CATGGTTGACTAGGGCGGGGAGTGCTAAGCCCTGCTCGCGATAAAAACAT
CACAGGCAGGCACCGCAGGAGAGGGTCTCTTTTGTGGCCCCGGTTGGGTC
GTCTAGCTAGTCGTGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGA
ATAAGCCAATAATGGGAGAATAAAAACAAATCTGTAGATAAATAGATAAT
TATCACTTGGTGCCGAGCCGAGCCGACGCAGCAAGCAAGAACACAAAACA
CACAAAACAAAAAAAAACGCGGACGTCCCGTCCACCCGCTCGAAGAAAAG
AGGCGTTTTCGCCGCAGAGACACGCATCCCACACCGCGGCACAGCGAAAG
CACTCAATTTCGGACGACTCGGCTGTGCATATGTATGTTGTTGTTGTTGT
TTGTTCACATTAGCTCGTATAATCGAGATTGCTAGTTCCGGAAAATCTAG
CAACTCACGGCCCGTGGTTACAGAAGTGCTAGAGCCATCAGAGGATCCGA
AAAGGACACATGCAGATACACCGGGCAAGGGTACACAAGGCCGAGGAGGC
ACACCTATGAATATTTCGATAAAAAACAAAATATGCATATCCTATCCTAC
TGAACCACGCATCCACGAATCTCCATTTGACGACAGAACTACGTTTCCCC
CCCGTTCACTGTTAACCAATGCACAGTTGCCGGCTACAGGAAAATTACTG
TCTGGAGTGCTGCCTGTACAAGAATGCACGGGTCGCGTGGTGGATATGGA
ACGCAATTGCTGTCTGAAGTGCTGTCAGAGTGACAACCCGCCGATACGCG
GTGAAAAAGAACAAGGCCAACCAAAAGCCACCAAGCAATCGACAGCTACC
AAGGCTATCCAATCATCCGTGGAACATATATAGGTACAGTACTCAAACAA
CGACACCGATCCGTTGCGTTCCACAATATAACGCAGGCATTTCTGCCCCG
TCTCTCTACAAAACCAGTGACGTCATCTCAGAGGCCATACACCAAGATTC
AGGGGGAAAACGAAAAACAATTGTCAACACAAGATGTTTGTCCGTGCGCC
ACGGCTCGACGTCTTCCGATGCTCCGCTGTTGCCACTGTAGCCAACCCAG
CATCACCACTCTCTCGATCCGCTCCGTACGTACACGCTTCCGTTGTTGTC
CTTCCGAGGCAGTGGTTCGCTTTCTCCCTCGTTGCACTCAAGGTGCTGGT
TTATAATTTCCTTTCTCACACTGAGGGTCAACCAAGCCACATCAATTCGT
CGCCAATCGTTCGAAGAGGCCCTCCTCCTTGGCGAGTCTATTAGGTTACC
AAGACAGTACAGCTCCCTCAATCACCTAGGGCCGTGTGCGTAGAGTCTCT
CCACCTCTTTTGGTGCCGCCTGCCTCCGCGCTCGAAAGCTGAGATGGACA
TTGCTGTCTACGCTAAGCCGCCAAAAAAGGGTCGCGCATCTGGGTTTTCG
TGCCTGGCTCACCAAATTACGACCCAACTCTACCGCAGCGCGAGCCTCGC
GGCGGCGCGCAGCAGCAAGAAGGTATCGGTCCCCTTGAGGGCGAGTCTAG
CCTTGCTCGCTAGAAAGACCCCCCCCCCCCCCTCGCTATGGGTCGTGCAT
GAAGCAAGCCTTGCCGAGGCAGCGGAGGTAACGGGAAATTATATGTATGT
ATGTATGTTTGTACTACTTCGAAGCATGTTATCGTGGAACTCTACGTACT
GTATTACCACGCACGACAACACATTCTCTGGACCGATTTTTTCAAAGCTC
AAGTACTCGACAGCAAGAAGAGTGCCAGTCCCGAAAAAGGCGGCGTTGGA
AGTATCCCATCACGAGCTGTCCGAAAATGTGTCGTTTGGTAATATGTAGA
GTCATACTCGTTGCGGAGTAGCCGAGCTTTGAAAGTCGATCCAGGGGGTG
CGTTATCTTGTGTCGTATACGGTAAGGCCGCCAAACCTTGACGCACCTCG
TCTCCTCCTCCCCGCCCACCCCTGACTCCTGTTATTAGTATTATTCTTAC
CAGAGAGCGAGCAGAGCAGGAGAGACCTTCCCTGTGTACACCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2024:12970..17662+

>mRNA_L-elsbetiae_contig2024.6090.1 ID=mRNA_L-elsbetiae_contig2024.6090.1|Name=mRNA_L-elsbetiae_contig2024.6090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig2024:12970..17662+ (Laminarionema elsbetiae ELsaHSoW15)
ATATGGTTGTCAGCGCTGCTCCGAGAAGGGCGCCGCGCCCACCGCGGCTG
CCTAATTTCTCCCGCACGAGTGGTTCTGCTCCGAGGATGAAGGTCTGGGT
TCGACTGCAGGACACGATCATATTTAGCCTCGCCGACGCCGAGTGCGACA
TGCCCCCCCACCCCCTGCATGGAGTAGCGAGGGTTGTCAGCGCTGCTCCG
AGAAGGGCGCCGCGCCCACCGCGGCTGCCTAATTTCTCCCGCACGAGTGG
TTCTGCTCCGAGGATGAAGGTCTGGGTTCGACTGCAGGACACGATCATAT
TTAGCCTCGCCGACGCCGAGTGCGACATGCCCCCCCACCCCCTGCATGGA
GTAGCGAGTATTATTCTTACCAGAGAGCGAGCAGAGCAGGAGAGACCTTC
CCTGTGTACACCCTATTATTCTTACCAGAGAGCGAGCAGAGCAGGAGAGA
CCTTCCCTGTGTACACCC
back to top