mRNA_L-elsbetiae_contig2022.6083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2022.6083.1
Unique NamemRNA_L-elsbetiae_contig2022.6083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A835W5I1_CHLIN (Rhodanese domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5I1_CHLIN)

HSP 1 Score: 88.6 bits (218), Expect = 5.560e-17
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSV-PETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNF++D+R+ V PE     PA+GRCLLC   WDDYG R RC+RCR+L+LVCD C
Sbjct:  300 GFFRGKNFLYDDRICVGPEAAPDAPAVGRCLLCGVAWDDYGERLRCSRCRLLLLVCDGC 358
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A834LAQ9_RHOSS (Rhodanese domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LAQ9_RHOSS)

HSP 1 Score: 88.2 bits (217), Expect = 6.600e-17
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + A    +G CLLC SP+DDY SRSRCT CRMLVLVCD+C
Sbjct:  257 GFFKGKNFVFDHRVSVGSSDAN--ILGTCLLCSSPFDDYSSRSRCTHCRMLVLVCDSC 312
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A6A4KET6_9ERIC (Rhodanese domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KET6_9ERIC)

HSP 1 Score: 88.2 bits (217), Expect = 7.410e-17
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDACTVLLA 324
            GFF GKNFVFD RVSV  + A    +G CLLC SP+DDY SRSRCT CRMLVLVCD+C   LA
Sbjct:  257 GFFKGKNFVFDHRVSVGSSDAN--ILGTCLLCSSPFDDYSSRSRCTYCRMLVLVCDSCRGTLA 317
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A2K3CQ73_CHLRE (Rhodanese domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQ73_CHLRE)

HSP 1 Score: 87.8 bits (216), Expect = 9.770e-17
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSV-PETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNF++D+R+ V PE     PA+GRCLLC   WDDYG R RC+RCR+L+LVCD C
Sbjct:  313 GFFRGKNFLYDDRICVGPEAAPHAPAVGRCLLCGVGWDDYGERLRCSRCRLLLLVCDGC 371
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A2R6RFT8_ACTCC (Rhodanese-like domain-containing protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RFT8_ACTCC)

HSP 1 Score: 87.4 bits (215), Expect = 1.220e-16
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + A    +G CLLC SP+DDY SRSRCT CRMLVLVCD+C
Sbjct:  255 GFFKGKNFVFDHRVSVGSSDAN--ILGTCLLCSSPFDDYSSRSRCTYCRMLVLVCDSC 310
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A7J0DA23_9ERIC (Metallopeptidase M24 family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DA23_9ERIC)

HSP 1 Score: 87.0 bits (214), Expect = 1.850e-16
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + A    +G CLLC SP+DDY SRSRCT CRMLVLVCD C
Sbjct:  255 GFFKGKNFVFDHRVSVGSSDAN--ILGTCLLCSSPFDDYSSRSRCTYCRMLVLVCDCC 310
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A835WLX1_9CHLO (Rhodanese domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WLX1_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 2.600e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSV-PET-PAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNF++D+R+ V PE  P   P +GRCLLC  PWDDYG R RC+RCR+L+LVCD C
Sbjct:  333 GFFRGKNFLYDDRICVGPEAAPDDVPPVGRCLLCGVPWDDYGERLRCSRCRLLLLVCDGC 392
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A103YKV3_CYNCS (Rhodanese-like domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YKV3_CYNCS)

HSP 1 Score: 85.1 bits (209), Expect = 7.630e-16
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + A    +G CL C SP+DDY SRSRC  CRMLVLVCDAC
Sbjct:  252 GFFKGKNFVFDHRVSVGSSDAN--VLGTCLACSSPFDDYSSRSRCAYCRMLVLVCDAC 307
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BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A1S4CFD8_TOBAC (rhodanese-like domain-containing protein 6 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4CFD8_TOBAC)

HSP 1 Score: 84.3 bits (207), Expect = 9.150e-16
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + +    +G CLLC SP+DDY SRSRCT CRMLVLVCD C
Sbjct:  258 GFFKGKNFVFDHRVSVGSSDSR--ILGTCLLCNSPFDDYSSRSRCTYCRMLVLVCDNC 313
[Close]
BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Match: A0A1S4ARK3_TOBAC (rhodanese-like domain-containing protein 6 isoform X2 n=3 Tax=Nicotiana TaxID=4085 RepID=A0A1S4ARK3_TOBAC)

HSP 1 Score: 84.3 bits (207), Expect = 1.290e-15
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  136 GFFCGKNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVCDAC 309
            GFF GKNFVFD RVSV  + +    +G CLLC SP+DDY SRSRCT CRMLVLVCD C
Sbjct:  145 GFFRGKNFVFDHRVSVGSSDSR--ILGTCLLCNSPFDDYSSRSRCTYCRMLVLVCDNC 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2022.6083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835W5I1_CHLIN5.560e-1762.71Rhodanese domain-containing protein n=1 Tax=Chlamy... [more]
A0A834LAQ9_RHOSS6.600e-1770.69Rhodanese domain-containing protein n=1 Tax=Rhodod... [more]
A0A6A4KET6_9ERIC7.410e-1768.25Rhodanese domain-containing protein (Fragment) n=1... [more]
A0A2K3CQ73_CHLRE9.770e-1762.71Rhodanese domain-containing protein n=1 Tax=Chlamy... [more]
A0A2R6RFT8_ACTCC1.220e-1670.69Rhodanese-like domain-containing protein n=1 Tax=A... [more]
A0A7J0DA23_9ERIC1.850e-1670.69Metallopeptidase M24 family protein n=1 Tax=Actini... [more]
A0A835WLX1_9CHLO2.600e-1663.33Rhodanese domain-containing protein n=1 Tax=Chlamy... [more]
A0A103YKV3_CYNCS7.630e-1668.97Rhodanese-like domain-containing protein n=1 Tax=C... [more]
A0A1S4CFD8_TOBAC9.150e-1668.97rhodanese-like domain-containing protein 6 n=1 Tax... [more]
A0A1S4ARK3_TOBAC1.290e-1568.97rhodanese-like domain-containing protein 6 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2022contigL-elsbetiae_contig2022:528..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.3
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog4096.XP_009796185.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rhodanase C-terminal
EggNOG OGs37HI1@33090,3GABF@35493,44FDW@71274,KOG2551@1,KOG2551@2759
COG Functional cat.E
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons3
Model size580
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2022.6083.1prot_L-elsbetiae_contig2022.6083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2022 528..1889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.2838674-CDS-L-elsbetiae_contig2022:527..7001622815836.2838674-CDS-L-elsbetiae_contig2022:527..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 528..700 +
1691683135.4299035-CDS-L-elsbetiae_contig2022:527..7001691683135.4299035-CDS-L-elsbetiae_contig2022:527..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 528..700 +
1622815836.293769-CDS-L-elsbetiae_contig2022:1165..12671622815836.293769-CDS-L-elsbetiae_contig2022:1165..1267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 1166..1267 +
1691683135.4405975-CDS-L-elsbetiae_contig2022:1165..12671691683135.4405975-CDS-L-elsbetiae_contig2022:1165..1267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 1166..1267 +
1622815836.3051555-CDS-L-elsbetiae_contig2022:1585..18891622815836.3051555-CDS-L-elsbetiae_contig2022:1585..1889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 1586..1889 +
1691683135.449261-CDS-L-elsbetiae_contig2022:1585..18891691683135.449261-CDS-L-elsbetiae_contig2022:1585..1889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 1586..1889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2022.6083.1

>prot_L-elsbetiae_contig2022.6083.1 ID=prot_L-elsbetiae_contig2022.6083.1|Name=mRNA_L-elsbetiae_contig2022.6083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
GKGEGSCGVASEGAKQRAQRDGTAGVGGASIQNAGVRSSGGGAREGFFCG
KNFVFDERVSVPETPAGGPAIGRCLLCESPWDDYGSRSRCTRCRMLVLVC
DACTVLLAGGNVVVGGGSGGSGEGAVARAPPVQLQSIPNPRADEGTVSER
GSPRATPAPPPAGGVGATAGETAGGTVAAAAAPPSAPSGGKRE
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mRNA from alignment at L-elsbetiae_contig2022:528..1890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2022.6083.1 ID=mRNA_L-elsbetiae_contig2022.6083.1|Name=mRNA_L-elsbetiae_contig2022.6083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1363bp|location=Sequence derived from alignment at L-elsbetiae_contig2022:528..1890+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAAGGAGAGGGTAGTTGTGGCGTGGCTTCGGAGGGAGCAAAGCAGCG
AGCGCAGCGAGATGGTACAGCAGGCGTCGGCGGAGCATCCATCCAGAACG
CGGGGGTTCGCTCGTCGGGAGGAGGAGCGAGGGAGGGGTTCTTCTGCGGC
AAAAATTTCGTCTTCGACGAGAGGTACAGCAGTAATTAATTTCCTTCCAG
TATTGCAGCAGAACTCTTGTCAGGTGTTGGTACTCTGATGATGCGTCTGT
ACAATGTTTGTTGGGACGACCGCTGGTGTATTGAGAACGCTCATGTTGGG
ACGGCGCATGGCTTTCTCACTGGGATGCCTTCCGGGGTTTTGAGAACCCT
CACCCAGGAGAGCCTCTGTGTGTTCTAGATGTACTCGAGTAGCAAGAACC
ACTCCGTAGTGGAGCAAGACACGGATGTGGTTTGCGTCCCAATGCTCCTT
GCGATGCTACACATTCGTAGTGTGTCTTGAAGAGTTGGAACGTTGTCCCG
CCTCTCCCCGAGTTAGGCTTTCGTCCGCCACCATCAAGAAGAACAGCCTC
CACCCCTCGAAGCGTTGCTCGTTGTTTTCACTGCCGTTGAAGACTTGTGC
ATGCGTTCCATTCCCCCCCCCCCCCATTGTACTCGCAGAGTCTCAGTGCC
CGAAACGCCGGCGGGGGGCCCGGCAATAGGGCGTTGCCTGCTGTGCGAAA
GCCCCTGGGATGACTACGGCAGCCGGTCCAGATGCACCAGGTGCGATCAC
TCTCGCCCCCCCCCCCACGGCATTATGTTTCGCTTTTTGTCGAGACAGCA
GGAGAAAGGCTTCGCTCTACTAGCGGCCTGTCTTGTCAGGTCAAGATATT
CTCGGAAATTTAAATTTTACGTACATAGCTTGGCCTGGTCGTCGCCGTTT
CATGACAATGTTGCTAAAGCGTTGCCTACGAACGCGAGGCTTCTCGTACG
CCGTGCACAGACCACGGGGGCGCGTGGAGTGTGCACTACTGCATTCAACA
GTACACAGTTGTTCTCAAACTCTTGGTCTGCCCTTTCTCTGCGTGCCGTT
GTTTGCAGGTGCCGCATGCTCGTGCTGGTGTGCGATGCCTGCACCGTGCT
CCTGGCAGGCGGCAACGTCGTCGTCGGCGGCGGCAGCGGTGGCAGCGGAG
AGGGAGCAGTGGCACGAGCTCCTCCGGTTCAACTACAGTCAATACCCAAC
CCACGAGCAGACGAAGGCACCGTTTCGGAACGGGGATCGCCACGAGCAAC
ACCAGCACCTCCGCCGGCCGGGGGAGTAGGAGCAACAGCAGGAGAAACCG
CGGGAGGCACTGTTGCCGCCGCCGCCGCGCCACCATCGGCACCATCGGGA
GGGAAACGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2022:528..1890+

>mRNA_L-elsbetiae_contig2022.6083.1 ID=mRNA_L-elsbetiae_contig2022.6083.1|Name=mRNA_L-elsbetiae_contig2022.6083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig2022:528..1890+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAAGGAGAGGGTAGTTGTGGCGTGGCTTCGGAGGGAGCAAAGCAGCG
AGCGCAGCGAGATGGTACAGCAGGCGTCGGCGGAGCATCCATCCAGAACG
CGGGGGTTCGCTCGTCGGGAGGAGGAGCGAGGGAGGGGTTCTTCTGCGGC
AAAAATTTCGTCTTCGACGAGAGGGAAAAGGAGAGGGTAGTTGTGGCGTG
GCTTCGGAGGGAGCAAAGCAGCGAGCGCAGCGAGATGGTACAGCAGGCGT
CGGCGGAGCATCCATCCAGAACGCGGGGGTTCGCTCGTCGGGAGGAGGAG
CGAGGGAGGGGTTCTTCTGCGGCAAAAATTTCGTCTTCGACGAGAGAGTC
TCAGTGCCCGAAACGCCGGCGGGGGGCCCGGCAATAGGGCGTTGCCTGCT
GTGCGAAAGCCCCTGGGATGACTACGGCAGCCGGTCCAGATGCACCAGAG
TCTCAGTGCCCGAAACGCCGGCGGGGGGCCCGGCAATAGGGCGTTGCCTG
CTGTGCGAAAGCCCCTGGGATGACTACGGCAGCCGGTCCAGATGCACCAG
GTGCCGCATGCTCGTGCTGGTGTGCGATGCCTGCACCGTGCTCCTGGCAG
GCGGCAACGTCGTCGTCGGCGGCGGCAGCGGTGGCAGCGGAGAGGGAGCA
GTGGCACGAGCTCCTCCGGTTCAACTACAGTCAATACCCAACCCACGAGC
AGACGAAGGCACCGTTTCGGAACGGGGATCGCCACGAGCAACACCAGCAC
CTCCGCCGGCCGGGGGAGTAGGAGCAACAGCAGGAGAAACCGCGGGAGGC
ACTGTTGCCGCCGCCGCCGCGCCACCATCGGCACCATCGGGAGGGAAACG
AGAGGTGCCGCATGCTCGTGCTGGTGTGCGATGCCTGCACCGTGCTCCTG
GCAGGCGGCAACGTCGTCGTCGGCGGCGGCAGCGGTGGCAGCGGAGAGGG
AGCAGTGGCACGAGCTCCTCCGGTTCAACTACAGTCAATACCCAACCCAC
GAGCAGACGAAGGCACCGTTTCGGAACGGGGATCGCCACGAGCAACACCA
GCACCTCCGCCGGCCGGGGGAGTAGGAGCAACAGCAGGAGAAACCGCGGG
AGGCACTGTTGCCGCCGCCGCCGCGCCACCATCGGCACCATCGGGAGGGA
AACGAGAG
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