mRNA_L-elsbetiae_contig20218.6082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20218.6082.1
Unique NamemRNA_L-elsbetiae_contig20218.6082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20218.6082.1 vs. uniprot
Match: D7FLS4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.530e-14
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MALPTIAALMRQRSAQVVQARGMRAGAELTRLAKWGLPAGAA 126
            M LPT+AALM+QRS QVVQARG+RAGAELTRLAKWGLP GAA
Sbjct:    1 MTLPTVAALMKQRSVQVVQARGLRAGAELTRLAKWGLPVGAA 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20218.6082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLS4_ECTSI1.530e-1485.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20218contigL-elsbetiae_contig20218:2451..2576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_005210.1
Exons1
Model size126
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.252026-CDS-L-elsbetiae_contig20218:2450..25761622815836.252026-CDS-L-elsbetiae_contig20218:2450..2576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20218 2451..2576 +
1691683135.4193308-CDS-L-elsbetiae_contig20218:2450..25761691683135.4193308-CDS-L-elsbetiae_contig20218:2450..2576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20218 2451..2576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20218.6082.1prot_L-elsbetiae_contig20218.6082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20218 2451..2576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20218.6082.1

>prot_L-elsbetiae_contig20218.6082.1 ID=prot_L-elsbetiae_contig20218.6082.1|Name=mRNA_L-elsbetiae_contig20218.6082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MALPTIAALMRQRSAQVVQARGMRAGAELTRLAKWGLPAGAA
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mRNA from alignment at L-elsbetiae_contig20218:2451..2576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20218.6082.1 ID=mRNA_L-elsbetiae_contig20218.6082.1|Name=mRNA_L-elsbetiae_contig20218.6082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig20218:2451..2576+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTTCCGACAATAGCCGCGTTGATGAGGCAAAGGTCCGCCCAGGT
GGTGCAGGCGAGAGGGATGAGGGCAGGCGCGGAGCTGACGAGGCTGGCGA
AGTGGGGGCTCCCGGCCGGCGCTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20218:2451..2576+

>mRNA_L-elsbetiae_contig20218.6082.1 ID=mRNA_L-elsbetiae_contig20218.6082.1|Name=mRNA_L-elsbetiae_contig20218.6082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig20218:2451..2576+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTTCCGACAATAGCCGCGTTGATGAGGCAAAGGTCCGCCCAGGT
GGTGCAGGCGAGAGGGATGAGGGCAGGCGCGGAGCTGACGAGGCTGGCGA
AGTGGGGGCTCCCGGCCGGCGCTGCGATGGCTCTTCCGACAATAGCCGCG
TTGATGAGGCAAAGGTCCGCCCAGGTGGTGCAGGCGAGAGGGATGAGGGC
AGGCGCGGAGCTGACGAGGCTGGCGAAGTGGGGGCTCCCGGCCGGCGCTG
CG
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