mRNA_L-elsbetiae_contig20203.6076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20203.6076.1
Unique NamemRNA_L-elsbetiae_contig20203.6076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 6.000e-64
Identity = 165/511 (32.29%), Postives = 245/511 (47.95%), Query Frame = 1
Query:  247 PRLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWE---------------LVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCACVGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPI-GPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQ 1731
            P L +LH        +  +EGG ++L F+TKA GSS YPF T+   L       HQ+ +  L  LL +L  +D   G GFD+  L GV A HF  R R  +PL +V +RDV  +          +++VVYDVP NL+++R +K  S        P GK L ++EA  ++L S H+ C P +++GN R  NMNG L+R++P  G D I  +   GR + ++DV + A G   +V R +  +        +E   + A +   R   E++    T     L               +R WE               L ++ IY +  +      A KH     +G R  D+     +G  FV   + G  R+R+  D          Q++    PW  EGT D+PLF +R + +  N  N  F S P+ +  D FN  G+GNK SVGG Y GW   + A Q  +++TH  T+AS GA C+GE+ LQC+I+  LQ GC+    +   D  ++ Q
Sbjct:  133 PSLAELHTLAPSYATSSTLEGGPENLRFNTKATGSSFYPFSTKEQQLIYVSQYTHQISQKALGGLLDILLMED--EGCGFDVGGLKGVDAAHFSNRMRQYLPLLQVLERDVPSTQQG------KTSAVVYDVPVNLLLDRDMKLASETALSEAYPAGKLLREEEAAVNSLTSDHVNCVPTKQVGNVRETNMNGTLSRTSPFMGIDGIKGS-VCGRKVFIHDVCICAVGGTPTVCRLLELFW------DVESRQVVATVRTFRSAAEVRHVGETETRGGL---------------QRTWEDCTVGGELLLEVADVLGLAEIYTEDEMD-----ADKHDGEWDQGARC-DMWG-RFLGEGFVV--QAGKKRQRAGDDP-------VQQFEVTHAPWCKEGTPDNPLFVLRREGFHLNNENLAFFSAPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGLQCEILGLLQRGCLGECMLTEDDGTTYLQ 597          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5L8E5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E5_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.050e-54
Identity = 164/532 (30.83%), Postives = 240/532 (45.11%), Query Frame = 1
Query:  250 RLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIA-AGTNSSV--------------TRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASS-T*LPLA-------------LDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQ------PCACVGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPIGPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQIEV 1740
            RL   H        +  MEGG ++LM +T A  S  YPFRT+   L   +   HQ+ +  L  LL +L  +D   G GFD+  L+ V A HF  R R  +PL  V  R+V  +          S++VVYDVP NL++ R +K  S          GK L  +EA  ++L + H+ C P + + N R  NMNG L+ ++P  G D I  +   GR ++V+D+ +   AGT S+                 TV  +R     + +    +  RL ++   WE   A + T L +A             ++   +  +  Q   S R++E+  +        K R +     +L  +EG  L++        P AC    F       GN+K                     PW  EG  + PLF +R + +  N  N  F S P+    D FN  G+GNK SVGG+Y GW   S A Q  R++TH  T+AS GASC+GE+ LQC+I+  LQ GC+    +   DDG+    EV
Sbjct:    3 RLENPHTHASSYAASSTMEGGPENLMHNTNAEESDFYPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLED--EGTGFDVRGLERVNAAHFNNRMRQYLPLLRVLVRNVPSTQEG------KSSAVVYDVPVNLLLARDMKLVSETALSETYAAGKILRGEEAAANSLTNDHVNCIPTKLVDNVRESNMNGTLSSTSPFMGLDGIQSS-VCGRKVYVHDICICEIAGTPSACRLLEIFWDTASGGEVATVRGFRPVAEVRNVGQAEMRGRLVRV---WEDCTAGAETQLNVAGVLGLAEIYTADEMEADKHDGEWDQGEDSTRKYEVTHA-----PWCKERTSEDPLFVLR-REGFHLNNDNLVFISAPIACFNDAFNCFGM--GNKKYEVTH---------------APWCKEGPSEDPLFVLRREGFHLNNDNLVFISAPVACYNDAFNCFGMGNKHSVGGTYFGWPWRSQAVQRLRRQTHVGTLASTGASCQGEIGLQCEILGLLQRGCLGECML-RDDDGAISNHEV 498          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 8.910e-54
Identity = 160/502 (31.87%), Postives = 237/502 (47.21%), Query Frame = 1
Query:  238 SNHPRLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDST--SVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCACVGIEFV--KVDRRGGNRKRSQPDGGLSSAAGQPQYQPIGPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQ 1731
            S+ PRL +LH        +  +EGGA+ L  +TKA GS  YPFRT+   L   +   H++ +  L  LL +L  +    GE FD+  L  V  EHF  R R  +PL E+ +RDV  +        DD T  SVVYD+P NL+++R ++  S        PGG+ L  +EA  ++L S H+ C P RR GN  + N NG LARS P FG+D I  A   GR ++VND  +      +++ R +  + Y G  + +    +  RLF+           S    +  +    G  RV        W+    ++  K+            +L   E    H++   A  G  +   +    G  R+        S+A  +P      PW  EG  +SPL+ +R +    N  N P+ S P  +  D FNA G+G K S+GGSY GWA  + A Q  + +TH  T+AS GA  +GE  LQC+I+  L  GC+    +   +  +F+Q
Sbjct:  155 SSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQ--YEGEPFDVRGLADVDPEHFYDRMRPYLPLLELLERDVPST--------DDGTTSSVVYDLPVNLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIR-ARVCGRKVYVNDTCVCEVEGVATLCRILEIF-YDGERRLVL---VTVRLFR---------GVSEVRGVGNEERRGGLLRV--------WKDCTCKLELKA----------NDVLGLVEMETPHEM---AAAGHPYPWDRFFGEGFLRQTGTKQALQSNARPKPFAVTESPWCAEGPANSPLWGLRREGVHLNNMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLGNGCLGRCKLTDDEGAAFEQ 611          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.190e-47
Identity = 164/555 (29.55%), Postives = 239/555 (43.06%), Query Frame = 1
Query:  238 SNHPRLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDST--SVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCA-------CVGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPIGPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSV------------------------------------------------GGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQ 1731
            S+ PRL +LH        +  +EGGA+ L  +TKA GS  YPFRT+   L   +   H++ +  L  LL +L  +    GE FD+  L  V  EHF  R R  +PL E+ +RDV  +        DD T  SVVYD+P NL+++R ++  S        PGG+ L  +EA  ++L S H+ C P RR GN  + N NG LARS P FG+D I  A   GR ++VND  +      +++ R +  + Y G  + +    +  RLF+           S    +  +    G  RV        WE    ++  K+            +L   E    H++             G  FV   R+ G ++  Q     S+A  +P      PW  EG  + PL+ +R +    N  N P+ S P  +  D FNA G+G K SV                                                GGSY GWA  + A Q  + +TH  T+AS GA  +GE  LQC+I+  LQ GC+    +   +  +F+Q
Sbjct:  164 SSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQ--YEGEPFDVRGLADVDPEHFYDRMRPYLPLLELLERDVPST--------DDGTTSSVVYDLPVNLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIR-ARVCGRKVYVNDTCVCEVEGVATLCRILEIF-YDGERRLVL---VTVRLFR---------GVSEVRGVGNEERRGGLLRV--------WEDCTCKLELKA----------NDVLGLVEMETPHEMAAAGHPYPWDRFFGEGFV---RQTGTKRALQ-----SNARPKPFAVTESPWCAEGPANRPLWGLRREGVHLNDMNLPYYSAPTVFHCDAFNAFGMGCKVSVWTTILMLLRDVPPDLTPSGGDKFAIAYRDSPILRLCTCMRCCGSQHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQ 668          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5KS83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS83_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.860e-45
Identity = 141/461 (30.59%), Postives = 196/461 (42.52%), Query Frame = 1
Query:  250 RLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMI-AAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCACVGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPI-GPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGAS 1626
            RL  LH        +  ME G ++   DT A  S  +PFRT+   L   +   HQ+ +  L  LL +L  +D   G GFD+  L+ V A HF  R R  +PL  V +R+V  +          S++VVYDVP NL++ R +K  S          GK L  +EA  ++L S H+ C P + + N R  NMNG L+ ++P  G D I  +   GR ++V+D+ +   AGT SS                        RL +L                   F D  S  V       R   V+  +    +   R    +  LL  K  + L    P         +  R     K +   G  S       Y+    PW  EGT + PLF +R + +  N  N  F S P+    D FN  G+GNK SVGG+Y GW   S A Q  R++TH  T+AS GAS
Sbjct:  116 RLENLHTHAPSYAASSTMEDGPENHRHDTNAEESDFFPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLED--EGNGFDVRGLERVNAAHFNNRMRQYLPLLRVLERNVPSTQEG------KSSAVVYDVPVNLLLARDMKLVSETALSETYAAGKILRGEEAAANSLMSDHVNCIPTKLVDNARESNMNGTLSSTSPFMGLDGIQSS-VCGRKVYVHDICICETAGTPSS-----------------------CRLLEL-------------------FWDTASGEVVATVRGFRPVAVVRNVGQAEMRGRRVRVWETVLLERKRSSML----PATWAWRRSTRPTRW----KLTSTMGSWSKLEQNGAYEVTHAPWCKEGTSEDPLFVLRREGFHLNTDNLVFISAPVACYNDAFNCFGMGNKHSVGGTYFGWPWRSQAVQRLRRQTHVGTLASTGAS 517          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.090e-40
Identity = 126/396 (31.82%), Postives = 174/396 (43.94%), Query Frame = 1
Query:  538 RDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACY------------RYFGMSKQMEWWHLYARLFQLRK*WE-IQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCACVGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPIGPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCI 1686
            R  +PL ++ KRDV       +A  + ++S V+D+P NL++ R ++ ES       +PGGK L  +E   ++L S+H+ C P RR GN  + N NG LA+STP FG+D I  A   GR ++V+D      G   ++ R +  +            R F  + ++       R   L + WE   P S   L  A        +  Q             R YA                   EG               FV      G ++R Q D     A  +P      PW  EGT D PLF +R      N  N  F S P+ +  D FNA GLGNK S+GGSY GW   S A Q  + +TH  T+A+ GA  EGE  LQC+I+  LQ GC+
Sbjct:    2 RPYLPLLQLIKRDVP------SAADETASSAVFDIPVNLLLHRTMQIESETALSETHPGGKLLRGEEIEANSLTSEHVNCVPTRREGNVMNSNHNGALAKSTPFFGFDGIR-ASVCGRKVYVHDCCACEVGGVLTLGRLMEIFYDDVRRLVLVTVRLFRTAAEVRGVGEEERRGGLLRVWEDCSPGSGVELEAAKVLGLVEMETPQNRSGDGGHPFPWDRFYA-------------------EG---------------FVTA---AGTKRRHQGD-----AMPKPFKVSEAPWHAEGTTDKPLFGVRHQGVHLNDMNLAFYSAPVVFSCDAFNAWGLGNKHSIGGSYFGWGWRSQAVQRLKNQTHVGTLATPGARSEGENGLQCEILGLLQQGCL 348          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.490e-32
Identity = 125/431 (29.00%), Postives = 179/431 (41.53%), Query Frame = 1
Query:  475 GEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTR---LHDIQPCACV-------GIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPI--GPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQ 1731
            GE FD+  L GV  EHF    R  +PL E+ +RDV  +          ++SVV D+P NL+++R ++  S        PGGK L  +EA  + L S HI C P RR G   + N NG LARSTP FG+D I  A   GR ++V              T T  C                          E++  ++    L +    YG +R        R  LV  R++           A +    G E  R   L   + C C         +E V+++          P        G P+   +   PW  EG  + P + +R      N  N P+ S    +  D  NA G+G K S+GGS  GWA  + A Q  + +TH  T+A  GA  +GE  LQC+I+  LQ G +    +   +  +F+Q
Sbjct:  122 GEPFDVRGLAGVDPEHFYDCMRPYLPLLELLERDVPSTHDGT------TSSVVCDLPVNLLLDRVMQIPSETALSEAYPGGKLLRGEEAAANLLTSDHINCVPTRREGTVMNSNHNGTLARSTPLFGFDSIR-ARVCGRKVYV--------------TNTCVC--------------------------EVEGGANLCRMLEIF---YGGER--------RLVLVTVRLF---------RGASEARSVGNEERRGGLLRVWENCTCKLELKANDVLELVEMETPHEIAAAGHPYPWDRFWRGWPKPFAVTESPWCAEGPANKPFWGLRRQGVHLNDMNLPYYSASTVFHCDAINAFGMGCKHSIGGSCFGWAWRTPAVQRLKHQTHVGTLARPGACSQGETGLQCEILVLLQNGYLGRCKLTDEEGAAFEQ 485          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.520e-27
Identity = 80/206 (38.83%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  238 SNHPRLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFG 855
            S+ PRL  LH        +  +EGGA  L  +T+A  S   PFRT+   L   +   H++ +  L  LL +L  +    GE FD+  L GV  EHF  R R  +PL E+ +RDV     +I  G   ++SVVYD+P NL++ER ++  S        PG + L  +EA  ++L S HI C   RR GN  + N NG LARSTP FG
Sbjct:  154 SSAPRLNWLHTMTPSYASSKTVEGGADKLRENTRAGRSPFDPFRTKEQQLLFVWQHVHRISQRALGGLLEVLLMQ--YEGEPFDVRGLAGVDPEHFYDRMRTYLPLLELLERDV----PSIHDG--TTSSVVYDLPVNLLLERVMQIPSETVLSEAYPGWELLRGEEAAANSLTSDHINCVATRREGNVVNSNHNGTLARSTPFFG 351          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: D7FUZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.720e-24
Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  469 ESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAMIAAGTNSSVTRTVACY 966
            + G GFD+  L GV A HF  R R  +PL ++ +RDV  +          +++VVYDVP NL+++R +K  S        P GK L  +EA  ++L S H+ C P +++GN R  NMNG L+R++P  G D I  +   GR + ++DV + A G   +V R +  +
Sbjct:    3 DEGCGFDVGGLKGVDAAHFSNRMRQYLPLLQILERDVPSTQQG------KTSAVVYDVPVNLLLDRDMKLASETALSEAYPAGKLLRGEEAAMNSLTSDHVNCVPTKQVGNVRETNMNGTLSRTSPFMGIDGIKGS-VCGRKVFIHDVCICAVGGTPTVCRLLELF 161          
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Match: A0A6H5K6W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.530e-22
Identity = 134/503 (26.64%), Postives = 197/503 (39.17%), Query Frame = 1
Query:  250 RLGQLHIPVCQEEGAVLMEGGAKHLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDPESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDDSTSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKHIFCGPER--RLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVN-DVAMIAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*WEIQPASST*LPLALDF*DYGSQRVQTHPSRRRWELVISRIYAKSILKPR*NAAKKHLLTGKEGTRLHDIQPCAC----VGIEFVKVDRRGGNRKRSQPDGGLSSAAGQPQYQPIGPWVLEGTEDSPLFTIRDDSYFHNVSNRPFASLPINYMIDGFNAHGLGNKKSVGGSYLGWASNSSACQTRRQETHGATVASAGASCEGEMVLQCKIVRELQMGCIATASVPAPDDGSFKQIE 1737
            RL  LH        +  MEGG ++L   T A  S  YPFRT+   L + +   HQ+ +  L  LL +L  +D   G GFD+  L+ V A HF  R R  +PL  V +R+V  +          S++VVYDVP NL++ R +K  S        P G           N A +    G  R  RL  K + +   +           +IA   +  R + +  D A           R VA  R  G ++      +  RL ++   WE   A +                 Q + +     L ++ IY    ++            GK     H    C      +G  FV   R    R+RS+ D      + Q       PW  EGT D PLF +R   +  N     F +L +               +   G+Y GW   S A Q  R++ H  T+A  GA+C+GE+ LQC+I+  LQ G +    +   DDG+  + E
Sbjct:  116 RLENLHTHAPSYAASSTMEGGPENLGHSTNAEESDFYPFRTKEQQLILIWQHTHQISQKALGGLLDILLLED--EGNGFDVRGLERVNAAHFNNRMRQYLPLLRVLERNVPSTQQG------KSSAVVYDVPVNLLLARDMKLVSETALSETYPAG-----------NFARR----GSRRQLRLWEKVYVHDKCIC----------EIAGTPSACRLLELFWDTASGGVVATVEGFRPVAEVRIVGQAE------MRGRLVRV---WEDCTAGA---------------ETQHNVAG---VLGLAEIYTADEME-----------AGKHDGEWHQGVRCTLWDRFLGEGFVVQARA--KRRRSEED------STQKYEVTHAPWCKEGTSDDPLFVLRRKGFHLNNDILVFRTLSLATTTPSTAL--AWETRHTRGTYFGWPWRSQAVQRLRRQMHVGTLAGTGATCQGEIGLQCEILGLLQRGRLGECML-MDDDGAISKHE 536          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20203.6076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JWC0_9PHAE6.000e-6432.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8E5_9PHAE1.050e-5430.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0J4_9PHAE8.910e-5431.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE3.190e-4729.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS83_9PHAE3.860e-4530.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KML3_9PHAE1.090e-4031.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE1.490e-3229.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE1.520e-2738.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ8_ECTSI2.720e-2436.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6W3_9PHAE2.530e-2226.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20203contigL-elsbetiae_contig20203:250..2018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003460.1
Exons2
Model size1740
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20203.6076.1prot_L-elsbetiae_contig20203.6076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20203 952..2000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.7102563-UTR-L-elsbetiae_contig20203:249..9511622815835.7102563-UTR-L-elsbetiae_contig20203:249..951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20203 250..951 -
1691683135.0566535-UTR-L-elsbetiae_contig20203:249..9511691683135.0566535-UTR-L-elsbetiae_contig20203:249..951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20203 250..951 -
1622815835.7392917-UTR-L-elsbetiae_contig20203:2000..20181622815835.7392917-UTR-L-elsbetiae_contig20203:2000..2018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20203 2001..2018 -
1691683135.0828176-UTR-L-elsbetiae_contig20203:2000..20181691683135.0828176-UTR-L-elsbetiae_contig20203:2000..2018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20203 2001..2018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.7202156-CDS-L-elsbetiae_contig20203:951..17871622815835.7202156-CDS-L-elsbetiae_contig20203:951..1787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20203 952..1787 -
1691683135.0656078-CDS-L-elsbetiae_contig20203:951..17871691683135.0656078-CDS-L-elsbetiae_contig20203:951..1787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20203 952..1787 -
1622815835.729841-CDS-L-elsbetiae_contig20203:1816..20001622815835.729841-CDS-L-elsbetiae_contig20203:1816..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20203 1817..2000 -
1691683135.0741553-CDS-L-elsbetiae_contig20203:1816..20001691683135.0741553-CDS-L-elsbetiae_contig20203:1816..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20203 1817..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20203.6076.1

>prot_L-elsbetiae_contig20203.6076.1 ID=prot_L-elsbetiae_contig20203.6076.1|Name=mRNA_L-elsbetiae_contig20203.6076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp
MNYDYREHDINYPSSGDESSDDNEWSNADVWRDGNSDDDGDSMVDPPHGV
EDAFADDEWKMPGDAGMIPEARDSNHPRLGQLHIPVCQEEGAVLMEGGAK
HLMFDTKAAGSSTYPFRTRSHLLFMKFVTDHQVPRVMLAALLYMLRFKDP
ESGEGFDINDLDGVQAEHFVARTRDCMPLYEVYKRDVRCSTTAIAAGGDD
STSVVYDVPANLIIERQLKAESSMKTFLQNPGGKQLSDQEAIDSNLASKH
IFCGPERRLGNKRHGNMNGVLARSTPHFGYDDIAPAGAKGRTIHVNDVAM
IAAGTNSSVTRTVACYRYFGMSKQMEWWHLYARLFQLRK*
back to top

mRNA from alignment at L-elsbetiae_contig20203:250..2018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20203.6076.1 ID=mRNA_L-elsbetiae_contig20203.6076.1|Name=mRNA_L-elsbetiae_contig20203.6076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1769bp|location=Sequence derived from alignment at L-elsbetiae_contig20203:250..2018- (Laminarionema elsbetiae ELsaHSoW15)
ATACGAGACCGGCGTCTGATGAACTACGACTATCGCGAACACGATATAAA CTATCCCTCCAGTGGCGACGAATCTTCAGATGATAACGAGTGGTCTAATG CCGATGTCTGGCGTGATGGTAATAGTGACGACGATGGTGACAGTATGGTG GATCCACCCCATGGAGTGGAAGATGCGTTTGCAGATGATGAGTGGAAGAT GCGTTTGCAGATGATGAAGCCGTCGGCAAAGCCGGAGACGCCGGCATGAT TCCGGAGGCAAGGGACAGCAACCATCCGCGACTAGGACAACTCCACATCC CGGTTTGCCAGGAAGAAGGGGCTGTCCTAATGGAAGGAGGAGCGAAGCAC CTAATGTTTGACACAAAGGCGGCCGGTTCATCGACCTACCCGTTCCGCAC CCGCTCTCATCTGCTCTTCATGAAGTTTGTCACTGATCACCAGGTGCCAC GAGTGATGTTGGCCGCATTATTATACATGCTTCGGTTCAAAGACCCAGAA TCAGGAGAAGGGTTTGACATCAATGACCTCGACGGCGTGCAGGCAGAGCA CTTCGTTGCAAGGACGCGCGACTGCATGCCTCTGTACGAAGTGTACAAAA GAGATGTCCGGTGCTCAACCACCGCCATTGCTGCCGGAGGAGACGACAGC ACTTCGGTAGTTTACGATGTCCCAGCAAACTTGATAATCGAACGGCAGTT GAAAGCCGAGTCGTCGATGAAAACGTTTTTACAAAACCCGGGAGGAAAGC AACTTTCGGACCAGGAAGCAATAGATTCTAATCTCGCGTCGAAGCACATA TTTTGCGGCCCCGAGAGGCGCTTGGGCAACAAACGGCACGGAAATATGAA CGGCGTCCTAGCAAGATCGACACCTCACTTCGGCTACGACGATATTGCGC CAGCTGGGGCGAAGGGGAGGACCATTCATGTCAACGATGTGGCGATGATC GCAGCCGGGACAAACAGTTCGGTGACACGGACTGTCGCGTGCTACAGGTA TTTTGGGATGTCGAAACAAATGGAATGGTGGCATCTGTACGCCCGTTTAT TCCAGTTGAGAAAGTGATGGGAGATCCAACCGGCGAGCAGTACTTAACTG CCTTTGGCGTTAGATTTCTGAGACTATGGGAGCCAGAGGGTACAGACCCA TCCGTCACGGAGGAGGTGGGAACTGGTAATATCAAGGATTTATGCGAAAT CTATTCTGAAGCCAAGGTGAAACGCAGCGAAGAAACATTTGCTGACTGGA AAAGAAGGCACGCGCCTGCACGACATACAGCCCTGCGCTTGCGTCGGGAT AGAGTTTGTTAAGGTTGATCGCCGCGGCGGAAACCGTAAGCGAAGTCAAC CTGATGGTGGGTTATCATCAGCCGCCGGTCAACCGCAATACCAACCGATA GGTCCATGGGTGCTGGAAGGTACAGAAGACAGCCCACTCTTCACCATCCG CGATGACAGTTACTTTCACAATGTGTCCAATCGGCCGTTCGCGAGCCTCC CCATCAACTATATGATCGACGGATTCAATGCCCACGGGTTGGGAAATAAA AAGTCTGTGGGAGGATCATACCTGGGCTGGGCATCTAACAGTTCAGCTTG CCAAACAAGGAGGCAAGAGACACATGGTGCCACTGTAGCTTCGGCGGGGG CGTCATGTGAGGGGGAGATGGTTCTACAGTGCAAGATCGTTCGTGAGCTC CAAATGGGGTGCATCGCCACAGCTAGCGTGCCTGCTCCGGATGATGGCTC GTTCAAGCAGATCGAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20203:250..2018-

>mRNA_L-elsbetiae_contig20203.6076.1 ID=mRNA_L-elsbetiae_contig20203.6076.1|Name=mRNA_L-elsbetiae_contig20203.6076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig20203:250..2018- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTACGACTATCGCGAACACGATATAAACTATCCCTCCAGTGGCGA
CGAATCTTCAGATGATAACGAGTGGTCTAATGCCGATGTCTGGCGTGATG
GTAATAGTGACGACGATGGTGACAGTATGGTGGATCCACCCCATGGAGTG
GAAGATGCGTTTGCAGATGATGAGTGGAAGATGCATGAACTACGACTATC
GCGAACACGATATAAACTATCCCTCCAGTGGCGACGAATCTTCAGATGAT
AACGAGTGGTCTAATGCCGATGTCTGGCGTGATGGTAATAGTGACGACGA
TGGTGACAGTATGGTGGATCCACCCCATGGAGTGGAAGATGCGTTTGCAG
ATGATGAGTGGAAGATGCCCGGAGACGCCGGCATGATTCCGGAGGCAAGG
GACAGCAACCATCCGCGACTAGGACAACTCCACATCCCGGTTTGCCAGGA
AGAAGGGGCTGTCCTAATGGAAGGAGGAGCGAAGCACCTAATGTTTGACA
CAAAGGCGGCCGGTTCATCGACCTACCCGTTCCGCACCCGCTCTCATCTG
CTCTTCATGAAGTTTGTCACTGATCACCAGGTGCCACGAGTGATGTTGGC
CGCATTATTATACATGCTTCGGTTCAAAGACCCAGAATCAGGAGAAGGGT
TTGACATCAATGACCTCGACGGCGTGCAGGCAGAGCACTTCGTTGCAAGG
ACGCGCGACTGCATGCCTCTGTACGAAGTGTACAAAAGAGATGTCCGGTG
CTCAACCACCGCCATTGCTGCCGGAGGAGACGACAGCACTTCGGTAGTTT
ACGATGTCCCAGCAAACTTGATAATCGAACGGCAGTTGAAAGCCGAGTCG
TCGATGAAAACGTTTTTACAAAACCCGGGAGGAAAGCAACTTTCGGACCA
GGAAGCAATAGATTCTAATCTCGCGTCGAAGCACATATTTTGCGGCCCCG
AGAGGCGCTTGGGCAACAAACGGCACGGAAATATGAACGGCGTCCTAGCA
AGATCGACACCTCACTTCGGCTACGACGATATTGCGCCAGCTGGGGCGAA
GGGGAGGACCATTCATGTCAACGATGTGGCGATGATCGCAGCCGGGACAA
ACAGTTCGGTGACACGGACTGTCGCGTGCTACAGGTATTTTGGGATGTCG
AAACAAATGGAATGGTGGCATCTGTACGCCCGTTTATTCCAGTTGAGAAA
GTGACCGGAGACGCCGGCATGATTCCGGAGGCAAGGGACAGCAACCATCC
GCGACTAGGACAACTCCACATCCCGGTTTGCCAGGAAGAAGGGGCTGTCC
TAATGGAAGGAGGAGCGAAGCACCTAATGTTTGACACAAAGGCGGCCGGT
TCATCGACCTACCCGTTCCGCACCCGCTCTCATCTGCTCTTCATGAAGTT
TGTCACTGATCACCAGGTGCCACGAGTGATGTTGGCCGCATTATTATACA
TGCTTCGGTTCAAAGACCCAGAATCAGGAGAAGGGTTTGACATCAATGAC
CTCGACGGCGTGCAGGCAGAGCACTTCGTTGCAAGGACGCGCGACTGCAT
GCCTCTGTACGAAGTGTACAAAAGAGATGTCCGGTGCTCAACCACCGCCA
TTGCTGCCGGAGGAGACGACAGCACTTCGGTAGTTTACGATGTCCCAGCA
AACTTGATAATCGAACGGCAGTTGAAAGCCGAGTCGTCGATGAAAACGTT
TTTACAAAACCCGGGAGGAAAGCAACTTTCGGACCAGGAAGCAATAGATT
CTAATCTCGCGTCGAAGCACATATTTTGCGGCCCCGAGAGGCGCTTGGGC
AACAAACGGCACGGAAATATGAACGGCGTCCTAGCAAGATCGACACCTCA
CTTCGGCTACGACGATATTGCGCCAGCTGGGGCGAAGGGGAGGACCATTC
ATGTCAACGATGTGGCGATGATCGCAGCCGGGACAAACAGTTCGGTGACA
CGGACTGTCGCGTGCTACAGGTATTTTGGGATGTCGAAACAAATGGAATG
GTGGCATCTGTACGCCCGTTTATTCCAGTTGAGAAAGTGA
back to top