prot_L-elsbetiae_contig2020.6073.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2020.6073.1
Unique Nameprot_L-elsbetiae_contig2020.6073.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length214
Homology
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 1.510e-136
Identity = 197/213 (92.49%), Postives = 207/213 (97.18%), Query Frame = 0
Query:    1 MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            MEGSGPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSE F  ++GP+P RH+LTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKM EE+VK+AIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQKAELLKRYKLKDTQLPRIQSTDPVARF+GM QKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGM-QKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.400e-93
Identity = 140/211 (66.35%), Postives = 177/211 (83.89%), Query Frame = 0
Query:    7 RLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            +LS EG K++R+R+TC+KML KRGYNV  EH+S      ++ F  +FG +P R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M++E+V+K+IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+KAELLKRYKL DTQLPRI STDPVAR+YG+ Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGL-QRGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 239 bits (611), Expect = 2.890e-77
Identity = 119/203 (58.62%), Postives = 161/203 (79.31%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YRVR+T +KML  RGY V +  + MT E FQH+FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+  +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 237 bits (605), Expect = 2.780e-76
Identity = 122/206 (59.22%), Postives = 164/206 (79.61%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  K++RVR+TC+KML KRGY V +  + M+++ F+ +FG  P R +LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M+  +V +AIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ  DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.520e-76
Identity = 119/203 (58.62%), Postives = 160/203 (78.82%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  K++RVR+T +KML  RGY V +E +  T E F  +FG +P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKDTQLPR+Q++DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGM-SRGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 233 bits (595), Expect = 8.320e-75
Identity = 117/203 (57.64%), Postives = 159/203 (78.33%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YRVR+T +KML  RGY V  + +  T++ F  +FG +P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGM-TRGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.700e-74
Identity = 119/206 (57.77%), Postives = 160/206 (77.67%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  ++YRVR+T +KML  R Y V +  + MT E FQ +FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM  +GQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGM-TRGQVVKIIRPSETAGRYVTYRAVI 277          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.330e-74
Identity = 121/206 (58.74%), Postives = 159/206 (77.18%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  ++YRV +T   MLEKRGY V +E  +M+++ F  +FG  P R +LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM+EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 229          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 237 bits (605), Expect = 9.400e-74
Identity = 119/206 (57.77%), Postives = 162/206 (78.64%), Query Frame = 0
Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  +++RVR+T +KML  RGY V +  + MT E FQ +FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+  +GQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.710e-73
Identity = 121/210 (57.62%), Postives = 161/210 (76.67%), Query Frame = 0
Query:    4 SGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            SG  L+ E  +++RV +T   ML KRGY V ++   M+   F  +F   P R +LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M++E V +AI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVL++ +K ELLKRY+LKDTQLPRIQ  DPVARFYGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGM-KRGQVVKIIRPSETAGRYVTYRVCL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI1.510e-13692.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA1.400e-9366.35RNA polymerase Rpb5, C-terminal domain-containing ... [more]
K3WP89_GLOUD2.890e-7758.62Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A482UUV9_9ARCH2.780e-7659.22DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
W4GMP1_9STRA6.520e-7658.62Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A067CT03_SAPPC8.320e-7557.64Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A2P4Y6Z7_9STRA2.700e-7457.77DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A6S9BLJ2_9STRA3.330e-7458.74Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A5D6XUM4_9STRA9.400e-7457.77Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2KP14_9STRA2.710e-7357.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 8..139
e-value: 7.2E-38
score: 131.7
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 10..139
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRSFPIRSF000747RPB5coord: 7..213
e-value: 1.5E-73
score: 244.6
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 140..213
e-value: 7.5E-33
score: 114.0
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 137..213
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 140..212
e-value: 5.0E-31
score: 106.4
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 10..94
e-value: 1.6E-26
score: 92.7
NoneNo IPR availablePANTHERPTHR10535:SF8coord: 10..211
NoneNo IPR availablePRODOMPD005155coord: 146..211
e-value: 2.0E-22
score: 260.0
IPR039531DNA-directed RNA polymerase subunit Rpb5-likePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 10..211
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 139..213
score: 19.259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2020contigL-elsbetiae_contig2020:4168..7756 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2020.6073.1mRNA_L-elsbetiae_contig2020.6073.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2020 3850..7756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2020.6073.1 ID=prot_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp
MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFG
PDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVK
KAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPS
ETAGRYVTYRLCI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036710RNA_pol_Rpb5_N_sf
IPR014381DNA_RNA_pol_RPB5_euk/virus
IPR035913RPB5-like_sf
IPR000783RNA_pol_subH/Rpb5_C
IPR005571RNA_pol_Rpb5_N
IPR039531Rpb5-like
IPR020609RpoH/RPB5