mRNA_L-elsbetiae_contig2020.6073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2020.6073.1
Unique NamemRNA_L-elsbetiae_contig2020.6073.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 1.360e-134
Identity = 197/213 (92.49%), Postives = 207/213 (97.18%), Query Frame = 1
Query:  319 MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            MEGSGPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSE F  ++GP+P RH+LTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKM EE+VK+AIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQKAELLKRYKLKDTQLPRIQSTDPVARF+GM QKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGM-QKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 9.980e-92
Identity = 140/210 (66.67%), Postives = 176/210 (83.81%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            LS EG K++R+R+TC+KML KRGYNV  EH+S      ++ F  +FG +P R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M++E+V+K+IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+KAELLKRYKL DTQLPRI STDPVAR+YG+ Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    5 LSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGL-QRGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 239 bits (611), Expect = 1.260e-75
Identity = 119/203 (58.62%), Postives = 161/203 (79.31%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948
            L+ E  ++YRVR+T +KML  RGY V +  + MT E FQH+FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+  +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 237 bits (605), Expect = 1.200e-74
Identity = 122/206 (59.22%), Postives = 164/206 (79.61%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            L+ E  K++RVR+TC+KML KRGY V +  + M+++ F+ +FG  P R +LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M+  +V +AIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ  DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.810e-74
Identity = 119/203 (58.62%), Postives = 160/203 (78.82%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948
            L+ E  K++RVR+T +KML  RGY V +E +  T E F  +FG +P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKDTQLPR+Q++DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGM-SRGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 233 bits (595), Expect = 3.540e-73
Identity = 117/203 (57.64%), Postives = 159/203 (78.33%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948
            L+ E  ++YRVR+T +KML  RGY V  + +  T++ F  +FG +P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGM-TRGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.150e-72
Identity = 119/206 (57.77%), Postives = 160/206 (77.67%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            L+ E  ++YRVR+T +KML  R Y V +  + MT E FQ +FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM  +GQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGM-TRGQVVKIIRPSETAGRYVTYRAVI 277          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.410e-72
Identity = 121/206 (58.74%), Postives = 159/206 (77.18%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            L+ E  ++YRV +T   MLEKRGY V +E  +M+++ F  +FG  P R +LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM+EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 229          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.070e-72
Identity = 119/206 (57.77%), Postives = 162/206 (78.64%), Query Frame = 1
Query:  340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            L+ E  +++RVR+T +KML  RGY V +  + MT E FQ +FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+  +GQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: B8C1Q1_THAPS (RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Q1_THAPS)

HSP 1 Score: 231 bits (588), Expect = 7.290e-72
Identity = 122/223 (54.71%), Postives = 162/223 (72.65%), Query Frame = 1
Query:  289 PRQPQ*AVENMEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957
            P +P  A    + S   L+ E  +++RV +T   ML KRGY V +E   MT   F   FG  P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI+  +++M++E+V  AI+V++G ITPFA+ A+ E+      ++E FK+AEL++DITEHTLVPEH VL+  +K ELLKRY+L++TQLPRIQ  DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:    7 PTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEM--SDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 226          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI1.360e-13492.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA9.980e-9266.67RNA polymerase Rpb5, C-terminal domain-containing ... [more]
K3WP89_GLOUD1.260e-7558.62Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A482UUV9_9ARCH1.200e-7459.22DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
W4GMP1_9STRA2.810e-7458.62Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A067CT03_SAPPC3.540e-7357.64Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A2P4Y6Z7_9STRA1.150e-7257.77DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A6S9BLJ2_9STRA1.410e-7258.74Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A5D6XUM4_9STRA4.070e-7257.77Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
B8C1Q1_THAPS7.290e-7254.71RPB5,-like protein to RNA polymerase i n=1 Tax=Tha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2020contigL-elsbetiae_contig2020:3850..7756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.1
Seed ortholog evalue5.1e-108
Seed eggNOG ortholog2880.D7G1Y9
Preferred nameRPB5
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG2012@1,KOG3218@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Ec32 ortholog descriptionRNA polymerase, subunit H/Rpb5 C-terminal
Ec32 orthologEc-07_003640.1
Exons5
Model size960
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2020.6073.1prot_L-elsbetiae_contig2020.6073.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2020 4168..7756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.4001896-UTR-L-elsbetiae_contig2020:3849..41671622815835.4001896-UTR-L-elsbetiae_contig2020:3849..4167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2020 3850..4167 +
1691683134.836906-UTR-L-elsbetiae_contig2020:3849..41671691683134.836906-UTR-L-elsbetiae_contig2020:3849..4167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2020 3850..4167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.4208817-CDS-L-elsbetiae_contig2020:4167..43591622815835.4208817-CDS-L-elsbetiae_contig2020:4167..4359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 4168..4359 +
1691683134.8618445-CDS-L-elsbetiae_contig2020:4167..43591691683134.8618445-CDS-L-elsbetiae_contig2020:4167..4359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 4168..4359 +
1622815835.4325795-CDS-L-elsbetiae_contig2020:5660..58461622815835.4325795-CDS-L-elsbetiae_contig2020:5660..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 5661..5846 +
1691683134.8727677-CDS-L-elsbetiae_contig2020:5660..58461691683134.8727677-CDS-L-elsbetiae_contig2020:5660..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 5661..5846 +
1622815835.4440591-CDS-L-elsbetiae_contig2020:6476..65511622815835.4440591-CDS-L-elsbetiae_contig2020:6476..6551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 6477..6551 +
1691683134.8836622-CDS-L-elsbetiae_contig2020:6476..65511691683134.8836622-CDS-L-elsbetiae_contig2020:6476..6551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 6477..6551 +
1622815835.4547126-CDS-L-elsbetiae_contig2020:7132..72431622815835.4547126-CDS-L-elsbetiae_contig2020:7132..7243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 7133..7243 +
1691683134.893688-CDS-L-elsbetiae_contig2020:7132..72431691683134.893688-CDS-L-elsbetiae_contig2020:7132..7243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 7133..7243 +
1622815835.4670637-CDS-L-elsbetiae_contig2020:7678..77561622815835.4670637-CDS-L-elsbetiae_contig2020:7678..7756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 7679..7756 +
1691683134.9028306-CDS-L-elsbetiae_contig2020:7678..77561691683134.9028306-CDS-L-elsbetiae_contig2020:7678..7756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 7679..7756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2020.6073.1

>prot_L-elsbetiae_contig2020.6073.1 ID=prot_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp
MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFG
PDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVK
KAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPS
ETAGRYVTYRLCI*
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mRNA from alignment at L-elsbetiae_contig2020:3850..7756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2020.6073.1 ID=mRNA_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3907bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:3850..7756+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCACTTTGGCCACGGACAGCTTGGGCAGATTGCACCCATCCGACCTCT TTGAAACTTCGAAACCCTGCCGTAACTTTCGGTTTGACCCTTGTGCTTGG ACACAGCGTGGACTAAGTCGTTTTGATAACACAGCTTGACTGCGTGCGGA CGGCAGCCTTTCGCTAGTGACTTTCAAAGCACTGGACCACCCCGAGTCTG CCTAGAGACGGCAACTGCAGCACAGGACAAGCTATCCAACGTACGGGAGC ACTACTGCTGGTCAAGAAGAAGCTACGCGGGACACAGGCCGAGACAACCG CAGTAGGCCGTCGAAAACATGGAGGGATCGGGCCCGCGATTGTCGGACGA AGGGCACAAGGTGTACCGGGTTCGGCAAACATGCATGAAGATGCTGGAGA AGCGAGGATACAACGTACTGCAGGAACACGTGTCCATGACATCTGAGGTG TTCCAGCATGAATTCGGCCCCGACCCTCAACGACACAACTTGACGCTCTT GGTAGAAAAGGTGAGCAAGGGGTACGGTAACCCACGTACGGCAGGTGACA GAAGATAAAACACCCCCTGGATAGATTTTCAAAGCTCGGTTCCTCCCCAG CAAGAACAGTAGTAAATAGTGCCAGTGCCGAAAGGGAGTGGCGTTGGAAA GGTCCAGTCGAGGGCTGTCCGAAAATGTTTCGTTTAGGTGCTGGCACCTT CTTCGTTACGGAGCAATGGAGCTCTAAAATTAAAATTCGGTCCAGGGGGT GTGGTATCTTGTGTCACCTCCACAATATTTAAATCAGTAATTCGTACAAG TAGACTATACTACTTTAATTCGACAAAGCAGTCGGTTATGTTGTTCTTCC TCTCCCCTTTCTGGCCCCACGGCGCTCCGCAGAACAGTCATCGCAAACTA TGGTAGTGTTCGCTGTTGAGGCAGCCTGGACCAACATGGGCGGGTCGAGT CACACCAGCTTGTATCTAACAGCTGTGGTTCGGCCCCCGTGTTGCTGCTT ATCTCCTCCTGTGAGAACAGTCGAACTGAAGGATCATCTTAAACCCTCTA GATTTAGGGGGAGAAATAATATGGTTGTTGCTTGCCTTTGGAGCTCACCA TGTATACTCATTTTCGTGCCCTTCCTGTGGGTATGCTGATATCCCCGCAT CTCTCTGTACCAATGTAGATATAGATGACGGGGAATCAATCGTGTGTGGG GTTGTGGTCCACACTAGTATGGTGGTGTTACTCGTGGGTGGTTGTGGGGG GTACATCAGGTAAAGAGAAACAGCGCTCAGTGATGGCGGCGGGCGTTTTC CCATGCTGAACAAACAACATGAGCGTGTTACCATATAACACGTGAAACGC GTGCATCAGAAGGCGTTTCATACCAAAAACTGCACCGGAGTAATGGGCGT GCAACGCCTGCCTTCTACGGGTCTATGTCTACAATACATGAAAAAAAACG GATGTGACCTTTGATGGATAACGCTTGGCGTGTGTACACAAATTTCCAAA CTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTAAACCCTTCTCGCG ACAAAAATCTTAGGCAAGCATTGCAGTGGGGGGCTCGGGGAAAGGAACCC CCTTCTTTGCGACCCCGGTTCAGCACTCTGGCAAGATAACCTCGTGTCAA GAACCCATCGAGCACTGGAAATAAATGTGAAGGAAGAAGCAAAAAAAGCT TTGATGAGATGGACCCCCTGCTGTTGCTGTCAATCTGTGTTCCGGCACGC CCGCGCGCTTGAAAAAATACACCGGGCGCTGGGCGTGCTTTCGCCACGCG CGCACGCACAGGTCGACGACCCGATGGACCAGATCTTCGTCTTTTTTCCC GACGACGAGAAGGTCGGCGTGAAGCCCATCCGAAGCTACTCGGAGAAGAT GCAGGAGGAGGACGTGAAGAAGGCCATCATCGTCATCAAGGGCGGCATCA CACCGTTCGCCCGGTCCGCCATCCAGGAACTCTGCGCTCAACGAGAGGTG CGAACACTCTGTGCGCTGACTGTACCGTCGGCAAGGATCGCCTTCGCGAA GAATTCCTGCAATTCCTGTTATATATAGGAAATAAAATACAGGGGTTCCG TAATTCATAACCCTAACCGCAACCCTAACCCTAACCCTAAACCGACCCCC CATTAGCAAGGACCGCCTTCGCGAAGAATTCCTGCAATTCCTGTCTATAT AGGAAATAAAAGACAGGGGTTCCGTACCCTAACCGTAACCCTAACCCTAA CCCCAAACCGACCCCCCATTGGCCATATGATTTCTTCCAGTAAAAACCTG CGAAGGCTACTGACCGGCAAATAAAGCTACATGTTTCCATCCCCCGAGAC AGAGAAACGCCCCCCTCCCCCGTCCAAACGTCCCGGCGTACCCCTCCCTG TTTTTGGCTCGGGTCGTGTGTGTGGTGGTTTTCGGTCTCTGGGGTGCTAA AATGTTGTTCGGCCACACATTTAACTCTTGGCGTTGCACGCACACCCGTG GCGCGGTTCGGCAGACGAAACGAACCTACTTCGAAGTATGAGTGTACCTC TGTCGGGTTGCCCCTGATGATCAAGAAGAACAACGAGCTACGTGCTGTTG TTTTGTGTCCTTCGCTCCCACTCGCAGGTCCAGGTGGAGGACTTCAAAGA CGCCGAGTTGATGCTGGACATCACGGAGCACACGCTGGTGCCGGAGCACC AGGTGAGGCGAGACTTAAACGTTGCGATGTCCACGCTCTCGTGATGCCGA CGCTTGAAAAAGTATGTAGGTACACAGCAAGAGTGTGTCTGAGGGCGTCC TCGCAAGGTGTAGGTGTCGTTGGAAGCGCCTGCTTTTGCACTACAGATGT TGAGTTTGTTGATCAGGCCAAGCCTTTCTGAACGCTGTTTTCAATCAAAT CGCGCTGAATTAGTGAGTGTACAGCAGTAGGTTGAGGCACTGGTTGTAGA ACGAAACTGAGAGCAAGATCGTTGGGACACCCGTCGTGTTTTCTATGTGT AGTCCCAATGGAGTTGGCCTGGGCTCTAGGTTTCGCTCTTGTTGCATTCT TCGGGAATGAGAGCCTTCCCATAACAGTTGTCGACGTTTTTGCTGGTTGG GCTACATACGTGAAGTGCGGACTACAAGAAGTTCGGAAATCGAGGACGTG CACGAGGGTTCACCGAGGTGTGTGTCACGGTCGGACCGAGTTTTAACGTA ATCGAATCAAAGAGCCGTTATAAAACAAAGAGACAACTTCTCCCCCTTGC CGCCGCTGCCATGATCGCTCGCTCAACCCCTAGGTGCTCACGTCCGAGCA AAAGGCAGAGCTGCTGAAGCGGTACAAGCTGAAGGATACGCAGCTGCCTC GGATACAGTCCACGGACCCAGTCGCCCGATTCTACGGAATGCAGGTATGT ATGTTGGTGCCGTTGGTGCCTTCACGTGGCATCCATGGACCGCCCGTCGT CTTTTTCCATGCGTCAAGAGCGGGGCCTCCGATGCATTTTTGGTACTGCG TTCCATAGTTGAACTCGTACGATGATGTTTATATCCGCGATGTCACCTTT GCACACATTTCGAGGAATACATCGATGTCGTCAGCAACGCGAATCCCGGT ACCCACACGTATGGGGGCGTCCCTTACGAAACGCGCGGCTGGTGTGATAT GAACGATCCCCCCTTGGCTGCTGCTGGGTCACCCCCCCCCTCCCTCCTTT ATTACGGCCGGGCGACATTTCGCTGCTTCGCGTGCGGGGATCTCACCCGC TATTTGTCTTCGGTATTGTTCGTGTTGTTGTCCGTCTATCTCTCGTGTGT GCTGGTATCGTCCTTGGGCCTTTGCCGAGCAGAAAGGCCAAGTGTGCAAG ATCACGCGACCCAGCGAGACGGCAGGGCGATACGTGACGTACCGCCTCTG CATTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2020:3850..7756+

>mRNA_L-elsbetiae_contig2020.6073.1 ID=mRNA_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:3850..7756+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGATCGGGCCCGCGATTGTCGGACGAAGGGCACAAGGTGTACCG
GGTTCGGCAAACATGCATGAAGATGCTGGAGAAGCGAGGATACAACGTAC
TGCAGGAACACGTGTCCATGACATCTGAGGTGTTCCAGCATGAATTCGGC
CCCGACCCTCAACGACACAACTTGACGCTCTTGGTAGAAAAGATGGAGGG
ATCGGGCCCGCGATTGTCGGACGAAGGGCACAAGGTGTACCGGGTTCGGC
AAACATGCATGAAGATGCTGGAGAAGCGAGGATACAACGTACTGCAGGAA
CACGTGTCCATGACATCTGAGGTGTTCCAGCATGAATTCGGCCCCGACCC
TCAACGACACAACTTGACGCTCTTGGTAGAAAAGGTCGACGACCCGATGG
ACCAGATCTTCGTCTTTTTTCCCGACGACGAGAAGGTCGGCGTGAAGCCC
ATCCGAAGCTACTCGGAGAAGATGCAGGAGGAGGACGTGAAGAAGGCCAT
CATCGTCATCAAGGGCGGCATCACACCGTTCGCCCGGTCCGCCATCCAGG
AACTCTGCGCTCAACGAGAGGTCGACGACCCGATGGACCAGATCTTCGTC
TTTTTTCCCGACGACGAGAAGGTCGGCGTGAAGCCCATCCGAAGCTACTC
GGAGAAGATGCAGGAGGAGGACGTGAAGAAGGCCATCATCGTCATCAAGG
GCGGCATCACACCGTTCGCCCGGTCCGCCATCCAGGAACTCTGCGCTCAA
CGAGAGGTCCAGGTGGAGGACTTCAAAGACGCCGAGTTGATGCTGGACAT
CACGGAGCACACGCTGGTGCCGGAGCACCAGGTCCAGGTGGAGGACTTCA
AAGACGCCGAGTTGATGCTGGACATCACGGAGCACACGCTGGTGCCGGAG
CACCAGGTGCTCACGTCCGAGCAAAAGGCAGAGCTGCTGAAGCGGTACAA
GCTGAAGGATACGCAGCTGCCTCGGATACAGTCCACGGACCCAGTCGCCC
GATTCTACGGAATGCAGGTGCTCACGTCCGAGCAAAAGGCAGAGCTGCTG
AAGCGGTACAAGCTGAAGGATACGCAGCTGCCTCGGATACAGTCCACGGA
CCCAGTCGCCCGATTCTACGGAATGCAGCAGAAAGGCCAAGTGTGCAAGA
TCACGCGACCCAGCGAGACGGCAGGGCGATACGTGACGTACCGCCTCTGC
ATTTAGCAGAAAGGCCAAGTGTGCAAGATCACGCGACCCAGCGAGACGGC
AGGGCGATACGTGACGTACCGCCTCTGCATTTAG
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