mRNA_L-elsbetiae_contig2016.6065.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2016.6065.1
Unique NamemRNA_L-elsbetiae_contig2016.6065.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: D7FNF5_ECTSI (Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF5_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 9.210e-157
Identity = 246/342 (71.93%), Postives = 267/342 (78.07%), Query Frame = 3 
Query:   78 VKGGVCAVFISHC-AAFTLSPAPTLPSPSRA----AAEHVT--RRRSTTS-------RFLPDRRADCLAGGSRVPGFALGAAKDWLKGGSQGKYGPEGGTAGAKPKNQSSSGTGPPAGKGGEDKRGAGENDQDPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEGPDVEFTLFRGSTDDLKEVVGAKGPPPQITVTVKQDGKPEVALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            +K  VC VF+SHC AAFTLSPA  L S  R+    AAEHV+  +RR           R  PDRR     GGSRVP FALGAAKDWLKGGSQGK         +                  E K+G    + DPRLY+VRIARATGIEWGTDISFSWVY+RAL+PDGAAANCGEISVGDQLIAINDQTLAGAPFD AMDA+I LEG DVEFT FRGST++LK+VVGA+ PP +ITVTVKQDGKPE+ALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIV I+EGLESTTIRS+DESSTLRDNP +YRLSCVTNMYDDVTVTVFPPVGAAQWTR
Sbjct:    1 MKAPVCVVFLSHCCAAFTLSPATWLLSSQRSCAFSAAEHVSSPQRRCXXXXXXXXXXRCQPDRRRQRSPGGSRVPSFALGAAKDWLKGGSQGK---------SXXXXXXXXXXXXXXXXXXEVKKGPNGEELDPRLYSVRIARATGIEWGTDISFSWVYIRALQPDGAAANCGEISVGDQLIAINDQTLAGAPFDVAMDAMIALEGTDVEFTFFRGSTEELKKVVGAEAPPAEITVTVKQDGKPELALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLESTTIRSVDESSTLRDNPPNYRLSCVTNMYDDVTVTVFPPVGAAQWTR 333
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A6S9LXT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LXT1_HETAK)

HSP 1 Score: 264 bits (674), Expect = 2.070e-83
Identity = 127/216 (58.80%), Postives = 163/216 (75.46%), Query Frame = 3 
Query:  420 ENDQDPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEGPDVEFTLFRGSTDDLKEV-VGAKGPPPQITVTVKQDGK-PEVALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            E + DPRLY + ++RATGI+WGTD+SF WVYV  +EP GAA    +I  G QLIA+N Q++ GA FD AM AL   +G +V  T FRG+ ++L+E  VG+ GP   IT+TV++ G+ PE  +TAP+GANLRD L  N INVYQS+TRWTNCKGKQLCGTCIV + EG ++T+ R +DE+STLRDNP +YRLSCVTNM+ D+TV  +P +GA QWTR
Sbjct:   77 EGEDDPRLYNINLSRATGIDWGTDLSFRWVYVMNIEPGGAADLTDQIKKGHQLIAVNGQSVLGASFDLAMGALAAADGREVGLTFFRGTREELQEATVGSTGPS-TITLTVREKGEGPEKIITAPAGANLRDVLIANNINVYQSITRWTNCKGKQLCGTCIVNVAEGFDNTSRRGIDEASTLRDNPPTYRLSCVTNMHGDLTVETYPEIGAYQWTR 291
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A7S2XYE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE9_9STRA)

HSP 1 Score: 256 bits (655), Expect = 2.690e-80
Identity = 118/215 (54.88%), Postives = 160/215 (74.42%), Query Frame = 3 
Query:  432 DPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEGPDVEFTLFRGSTDDLKEVVGAKG-----PPPQITVTVKQDGKPEVALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            DPRLY V + R+TGI + +D+SF WVYVR L P+GAA   G +  GDQ++AIN++   GA F+  +D +  ++GP++ FT+FRGSTD+LK++V   G     PP    +TV++  +P++ L AP G N+RD + EN INVYQS+TRWTNC GKQLCGTCIVE+ EGL + T++S+DE++ LR+NP SYRLSCVT++Y D TV +FP VGAAQWTR
Sbjct:   95 DPRLYDVTVPRSTGILFASDLSFKWVYVRDLIPNGAAMRTGLVKKGDQVVAINEENALGASFNYVIDLISQVKGPEITFTMFRGSTDELKDLVEKNGGVVEKPPTTAKITVQRKDQPDLELEAPIGKNIRDLMIENKINVYQSLTRWTNCNGKQLCGTCIVEVTEGLNNLTLKSVDEATVLRENPPSYRLSCVTDIYGDATVKIFPAVGAAQWTR 309
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A835Z6S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S1_9STRA)

HSP 1 Score: 255 bits (652), Expect = 4.450e-80
Identity = 121/224 (54.02%), Postives = 160/224 (71.43%), Query Frame = 3 
Query:  396 GEDKRGAGENDQDPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEGPDVEFTLFRGSTDDLKEVVGAK--GPPPQITVTVKQDGKPEVALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            GE++  A E+D  PRL+   I+RATGI+WGTD+SF WVYVRALEP+G+AA  G +S GDQL++ N ++  GAPFD  M       G DV+   FRG+T +L+ + G        +  +TV+Q GK ++ +   +GANLRD L  NG+NVYQS+TRWTNCKG+QLCGTCIV++    ++ TI+S+DE STLR NP SYRLSCVTN+Y D+TV +FPP+G  QWTR
Sbjct:   71 GEEEETAEEDD--PRLHTATISRATGIDWGTDLSFRWVYVRALEPNGSAARTGLVSKGDQLVSFNGESCVGAPFDFVMSLFSKATGTDVDLAFFRGTTAELRALAGGGDGADAERARITVQQPGKADLVIECAAGANLRDVLVGNGVNVYQSLTRWTNCKGRQLCGTCIVDVAGASDACTIKSVDERSTLRSNPPSYRLSCVTNVYKDITVQIFPPIGRDQWTR 292
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A7S3TKK5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKK5_9SPIT)

HSP 1 Score: 234 bits (598), Expect = 1.220e-72
Identity = 110/210 (52.38%), Postives = 147/210 (70.00%), Query Frame = 3 
Query:  432 DPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEGPDVEFTLFRGSTDDLKEVVGAKGPPPQITVTVKQDGKPEVALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            DPRL +V + + TGI++G D+S  W YV +L P GAA    E+ VGDQL+AI  +++ G P  +AM+ +   EG +VE   FRGS + L+ +   +  P  IT+T+++  +P+     P G NLRD L   GINVYQSVTRWTNC GKQLCGTCIV++ EG+E  T RSLDE+STLR+NP +Y+L+C+TN+Y DVTV + P VGAAQWTR
Sbjct:   33 DPRLLSVSLDKVTGIDFGCDLSLCWPYVLSLTPGGAAERQAEVKVGDQLLAIEGESVIGQPVASAMERIAAAEGKEVEMLFFRGSREALQALCAVEQGPATITLTLQRKDQPDEKFQLPYGCNLRDELISRGINVYQSVTRWTNCNGKQLCGTCIVDVVEGIEGCTRRSLDEASTLRENPETYKLACITNLYGDVTVKLMPKVGAAQWTR 242
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A1Z5KR35_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR35_FISSO)

HSP 1 Score: 236 bits (601), Expect = 2.710e-72
Identity = 124/225 (55.11%), Postives = 154/225 (68.44%), Query Frame = 3 
Query:  432 DPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQ-----TLAGAPFDAAMDALIGLEGP--DVEFTLFRGSTDDLKEVVG----AKGPPPQITVTVKQD-GKPE---VALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            DPRLY VR++RA GI+WGTD+SFS+VYVR ++P G AA  GE+  GDQL  +         L GAPFD  M+  + L+    +++F  FRG+  +LK +       +G   QITVTV Q+ G  E   V LTA  G N+R+ L +NGINVYQSVTRWTNCKGKQLCGTCIV I +G   T  +S+DE+STLR+NP SYRLSCVT  YDD+TV  FPP+ AAQWTR
Sbjct:   76 DPRLYKVRLSRAPGIDWGTDLSFSFVYVRDMDPAGDAAFSGEVQKGDQLCELTPVGGVPIPLIGAPFDLVMNTFVELDKSVREIDFVFFRGTKQELKAICANGNSIQGESEQITVTVIQNKGSQEEAVVTLTAKPGVNVRELLVDNGINVYQSVTRWTNCKGKQLCGTCIVNITKGSLGTNRKSMDEASTLRENPDSYRLSCVTFAYDDITVETFPPIKAAQWTR 300
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: K0RAN8_THAOC (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAN8_THAOC)

HSP 1 Score: 232 bits (591), Expect = 3.080e-71
Identity = 125/225 (55.56%), Postives = 152/225 (67.56%), Query Frame = 3 
Query:  432 DPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAIND-------QTLAGAPFDAAMDALIGLEGP--DVEFTLFRGSTDDLKEVVG--AKGPPPQITVTVKQD--GKPEVA--LTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            D RL  VRI+RATGIEWGTD+SFS+VYVR ++P G+A+  GEI VGDQL  +           L GAPFD  M+A  GL+     ++   FRG+ D+LK+     +   P  IT+TV Q+   K E    + A +GAN+R  L +NGINVYQSVTRWTNCKGKQLCGTCIV + EG   T  +S+DESSTLR+NP SYRLSCVT  Y DVTV  FPP+ AAQWTR
Sbjct:   43 DTRLRRVRISRATGIEWGTDLSFSFVYVRDMDPAGSASISGEIEVGDQLCELRPVAEGGEATNLIGAPFDQVMNAFAGLDRKVTTLDLVFFRGTKDELKDACSGDSNAEPEIITITVVQNKGAKDETTRYIQAMAGANVRQTLVDNGINVYQSVTRWTNCKGKQLCGTCIVNVKEGGADTNRKSIDESSTLRENPESYRLSCVTFAYGDVTVETFPPIKAAQWTR 267
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: B8C497_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C497_THAPS)

HSP 1 Score: 231 bits (588), Expect = 4.200e-70
Identity = 126/231 (54.55%), Postives = 153/231 (66.23%), Query Frame = 3 
Query:  426 DQDPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLI---AINDQT-------LAGAPFDAAMDALIGLEGP--DVEFTLFRGSTDDLKEVVGAKG---PPPQITVTVKQD-GKPEVALT---APSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            D DPRL  +R+ RATGIEWGTD+SFS+VYVR LEP GAA+  GE+ +GDQ+    A++D T       L GAPFD  M+A   L+    DV+   FRG+ D+LK             +IT+TV Q+ G  +  L    A +G NLR  LT+NGINVYQS TRWTNCKGKQLCGTCIV I  G   T  +SLDE+STLR+NP SYRLSCVT  Y D+TV  FPP+ A+QWTR
Sbjct:   88 DSDPRLRRLRLPRATGIEWGTDLSFSFVYVRDLEPSGAASLSGEVEIGDQICELRAVSDSTGVGEVINLIGAPFDKVMEAFASLKKDVRDVDLVFFRGTKDELKAACAGGSFSEENEKITITVIQNKGSNDEELRTIEAKAGCNLRQVLTDNGINVYQSFTRWTNCKGKQLCGTCIVNIANGSGDTNRKSLDEASTLRENPESYRLSCVTFAYGDITVETFPPIEASQWTR 318
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A448ZDP1_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP1_9STRA)

HSP 1 Score: 231 bits (589), Expect = 6.630e-70
Identity = 128/233 (54.94%), Postives = 156/233 (66.95%), Query Frame = 3 
Query:  432 DPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLI----AINDQ--------TLAGAPFDAAMDALIGLEGP--DVEFTLFRGSTDDLK-----EVVGAKGPPPQITVTVKQD-GKPE---VALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            D RLY VR++RA GIEWGTD+SFS+VYVR +EP G A+  G +S GDQL      +ND+        +L GA FD  M +  GLE    +++   FRG+ D+LK     E  G  G    IT+TV Q+ G PE   + L AP GAN+R FL +NGINVYQSVTRWTNCKGKQLCGTCIV I +GL +T  +S+DE+STLR NP SYRLSCVT  + DVTV  +PPV A QWTR
Sbjct:  114 DERLYRVRLSRAPGIEWGTDLSFSFVYVRDMEPTGQASLSGLVSKGDQLCELIPVVNDEDAPRPEAISLLGASFDYVMTSFAGLEKTVSEIDLVFFRGTKDELKALCNGEAAGTDGDD-TITITVVQNKGSPEEKLLRLRAPRGANVRQFLVDNGINVYQSVTRWTNCKGKQLCGTCIVNIADGLPNTNWKSMDEASTLRSNPDSYRLSCVTFAHGDVTVETYPPVNADQWTR 345
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BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Match: A0A7S2A528_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A528_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.190e-70
Identity = 122/242 (50.41%), Postives = 157/242 (64.88%), Query Frame = 3 
Query:  399 EDKRGAGENDQDPRLYAVRIARATGIEWGTDISFSWVYVRALEPDGAAANCGEISVGDQLIAINDQ-----------TLAGAPFDAAMDALIGLEGP--DVEFTLFRGSTDDLKEV-VGAKGPPPQ---ITVTVKQ--DGKPEVA--LTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESSTLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR 1061
            E+  G+ +   DPRLY +R+ RA GIEWGTD+SFS+VYVRA+EP G A+  G++ V  Q+  I               L GAPFD  M     L+    +V+   FRG+ ++LK    G+    P+   IT+TV Q  D K ++   +TAP GAN+R  L + GINVYQS+TRWTNCKGKQLCGTCIV + EG  +T  +S+DE+STLR+NP +YRLSCVT  YDDVTV  FPP+ AAQWTR
Sbjct:    2 EEDEGSIDISSDPRLYRIRLPRAPGIEWGTDLSFSFVYVRAMEPAGPASISGQVGVNHQICEIRPVLTTSNEAPTPINLIGAPFDQVMQTFANLDRTIIEVDLVFFRGTKEELKAACAGSNNSTPEKETITITVIQNNDSKNKITKTITAPVGANIRQTLVDEGINVYQSLTRWTNCKGKQLCGTCIVNVKEGGMNTNRKSMDEASTLRENPDTYRLSCVTFAYDDVTVETFPPIKAAQWTR 243
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2016.6065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF5_ECTSI9.210e-15771.93Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus Ta... [more]
A0A6S9LXT1_HETAK2.070e-8358.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XYE9_9STRA2.690e-8054.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6S1_9STRA4.450e-8054.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3TKK5_9SPIT1.220e-7252.38Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A1Z5KR35_FISSO2.710e-7255.112Fe-2S ferredoxin-type domain-containing protein n... [more]
K0RAN8_THAOC3.080e-7155.562Fe-2S ferredoxin-type domain-containing protein (... [more]
B8C497_THAPS4.200e-7054.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A448ZDP1_9STRA6.630e-7054.942Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2A528_9STRA9.190e-7050.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2016contigL-elsbetiae_contig2016:8175..13185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score457.6
Seed ortholog evalue5e-126
Seed eggNOG ortholog2880.D7FNF5
Hectar predicted targeting categorychloroplast
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S5MT@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1072
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2016.6065.1prot_L-elsbetiae_contig2016.6065.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2016 8183..13132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.9511106-UTR-L-elsbetiae_contig2016:8174..81821622815833.9511106-UTR-L-elsbetiae_contig2016:8174..8182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 8175..8182 -
1691683133.6573794-UTR-L-elsbetiae_contig2016:8174..81821691683133.6573794-UTR-L-elsbetiae_contig2016:8174..8182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 8175..8182 -
1622815834.039527-UTR-L-elsbetiae_contig2016:13132..131851622815834.039527-UTR-L-elsbetiae_contig2016:13132..13185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 13133..13185 -
1691683133.7242138-UTR-L-elsbetiae_contig2016:13132..131851691683133.7242138-UTR-L-elsbetiae_contig2016:13132..13185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 13133..13185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.9640334-CDS-L-elsbetiae_contig2016:8182..83601622815833.9640334-CDS-L-elsbetiae_contig2016:8182..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 8183..8360 -
1691683133.6673658-CDS-L-elsbetiae_contig2016:8182..83601691683133.6673658-CDS-L-elsbetiae_contig2016:8182..8360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 8183..8360 -
1622815833.97404-CDS-L-elsbetiae_contig2016:9149..93241622815833.97404-CDS-L-elsbetiae_contig2016:9149..9324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 9150..9324 -
1691683133.6755545-CDS-L-elsbetiae_contig2016:9149..93241691683133.6755545-CDS-L-elsbetiae_contig2016:9149..9324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 9150..9324 -
1622815833.9860318-CDS-L-elsbetiae_contig2016:9904..100401622815833.9860318-CDS-L-elsbetiae_contig2016:9904..10040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 9905..10040 -
1691683133.6834178-CDS-L-elsbetiae_contig2016:9904..100401691683133.6834178-CDS-L-elsbetiae_contig2016:9904..10040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 9905..10040 -
1622815833.9999793-CDS-L-elsbetiae_contig2016:10436..106361622815833.9999793-CDS-L-elsbetiae_contig2016:10436..10636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 10437..10636 -
1691683133.6915455-CDS-L-elsbetiae_contig2016:10436..106361691683133.6915455-CDS-L-elsbetiae_contig2016:10436..10636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 10437..10636 -
1622815834.0138643-CDS-L-elsbetiae_contig2016:12428..125301622815834.0138643-CDS-L-elsbetiae_contig2016:12428..12530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 12429..12530 -
1691683133.700832-CDS-L-elsbetiae_contig2016:12428..125301691683133.700832-CDS-L-elsbetiae_contig2016:12428..12530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 12429..12530 -
1622815834.0273921-CDS-L-elsbetiae_contig2016:12912..131321622815834.0273921-CDS-L-elsbetiae_contig2016:12912..13132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 12913..13132 -
1691683133.712652-CDS-L-elsbetiae_contig2016:12912..131321691683133.712652-CDS-L-elsbetiae_contig2016:12912..13132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 12913..13132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2016.6065.1

>prot_L-elsbetiae_contig2016.6065.1 ID=prot_L-elsbetiae_contig2016.6065.1|Name=mRNA_L-elsbetiae_contig2016.6065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=337bp
MARLTRSVVKGGVCAVFISHCAAFTLSPAPTLPSPSRAAAEHVTRRRSTT
SRFLPDRRADCLAGGSRVPGFALGAAKDWLKGGSQGKYGPEGGTAGAKPK
NQSSSGTGPPAGKGGEDKRGAGENDQDPRLYAVRIARATGIEWGTDISFS
WVYVRALEPDGAAANCGEISVGDQLIAINDQTLAGAPFDAAMDALIGLEG
PDVEFTLFRGSTDDLKEVVGAKGPPPQITVTVKQDGKPEVALTAPSGANL
RDFLTENGINVYQSVTRWTNCKGKQLCGTCIVEINEGLESTTIRSLDESS
TLRDNPASYRLSCVTNMYDDVTVTVFPPVGAAQWTR*
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mRNA from alignment at L-elsbetiae_contig2016:8175..13185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2016.6065.1 ID=mRNA_L-elsbetiae_contig2016.6065.1|Name=mRNA_L-elsbetiae_contig2016.6065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5011bp|location=Sequence derived from alignment at L-elsbetiae_contig2016:8175..13185- (Laminarionema elsbetiae ELsaHSoW15)
CCCTGTGCCGCTCGCATACAGGCTGGCGGTGTGTCTGACTTGCTCGATCC
ACCATGGCGCGGTTGACGCGATCAGTGGTGAAGGGAGGAGTTTGTGCCGT
ATTTATCTCCCACTGCGCCGCGTTCACGCTGTCGCCAGCACCCACCCTCC
CATCTCCTTCCCGAGCAGCAGCGGAGCATGTCACCAGGAGGAGGAGCACC
ACAAGCAGGTTCTTGCCTGATCGACGAGCTGATTGTCTAGCTGGCGGCTC
TCGCGTGCCTGGTTTCGCTCTGGGTAGGTGTCCCTTCACGTGTGCCGTGC
TGTGTGTTTCAACCAGTTTTTGAAGTTAGGCACAGGTCTGCTGCATCCTG
CTCACATGAGATACGATAGCAGACCTGCTGTGATGTTCGCGTTCGGTACA
CAGACAGCAAGGAGTGCTTGCATTTCGGAGACGTTCCAGTGCTAAATAGA
CATACATGTTGCCTAGCATTGGTTGTTGCGTTGCTGTTGGGATTTTGATA
TCTACCTGCTCCAGTAAGAACACAAGAACACACAACAGCAGTTCATGATG
TTTAGTTTGGAAGAAACGGTTGCATGCAAGCGAAAACATGATCATCTCCC
GCACCACCCTCTCCCCGGCACCACCCTCTCCCCGGCATACACGACAAAAA
TGAAGGCGCGGCGAAAGACTGGCTCAAAGGAGGCTCTCAGGGAAAGTACG
GACCTGAGGGGGGCACTGCTGGTGCCAAACCCAAAAATCAATCTTCTTCG
GGTACAGGTGAGACAACCAGAGACGTTTGCTGCTAAAGCTTGTAACTTCA
CGTGTACAACACCCACCAACGCACCACACACCCTGCAACCTTTTATGACG
CACGCCGCCAGGAGACGGGTGCTCTCTGTTGCTGTAAACACCACTGCCGT
GTTGTAGTTTTGTGTGTTGTAGGAAGTTCTCCAGCGGGGGGTCACCCGCA
GCGTTTGGAACTTGACGATACAACCTTCCCCCCAACCCTTGTCCGTGTCT
CGCTCGTACTATTTAGTATGACGGCAATGACGGCATCAACCTCGGAACCT
ACGGAACTGTCTGTCAAACGCATCGGGTTTTTGTGCCTCTCGAGGCCCTG
CCAGACTTCTGGCATGGGGTGTTTTGGCGCACGTAACACCAATAGTGTGA
GATCCTCAGCTCGAAGCTCCTTGTAACCAACCACTCATGGGAGTACTCTC
GCACAAATGGTGGAGATATTTTGGAGACAGATATTACATGTGGTAAAAGG
GTGTGAACGTGTGAACCTCCCAGCGTCTGTTGAACATGTTTAACCCTTTT
ACCAAATAGCAGTATTTCAGAGAGCTTCTAGTGCCGCTCGATGTTATCGC
TTGTTTATTTTTGCCCCAGTGGACACATGTCGTGCCCGGCCGGTGCCATG
CGGTGGTGGTGGCCAGGCAGAGCGTCACGGTAGTATCGATGTCTGTTCAG
GGAGCAGTTTTCAATACGCGATTCGCATCTTTTCAAATTTGTTCTGTGTT
TCTATGCATGCATGTGGCGTGACTCTGCTACTTATCGGACGGCGAACGAA
ACAGAAAAAAAAACACACTCAACCCTGCCGCTGTATGAGTACCATGATAC
ATACACCCAAACGATTATCAAGCACACGAGTAAATGTCACCGCGATACAG
CAAGCAGCAGGCACGGGGGGTCCGTCGCGATAAAGCATGCCTCCCCCCCC
CGACACATTGTTTCCGCCATGAAAGATCAAGAGCAATCAAACCTGCTTTC
TCGCTTTGGCTGTCACGCCCCTACAACCAAACAACAACCATGACGCCGCC
TACACTTATCTCGACATGCATACAGACTTACTTCTCCTTTTATGGAGTGT
ATTGTATATTTTTTTCTACCCCGGTCAGTAGTAGCGGGCGAGGACATGAC
CCGATGCACCTTTTTAATCGTGTGGTCATATTCTTCGGAGCACTCGCTCT
CAGGAGGGGTCTTCTGAGCACACACGGCCCAACCAAAGAGACGAGTCACC
TCCTCTTGGGCGGAGTCTGCACGCGCGTAGTTATAATATATTAAATCACC
TCCTCTTGGGCGAGTCTGCACGCGCGTAAATATAATATGTTGATCGGGCA
GAGCGGGCACCAAACGAAAAAAACACGCCCGCTTCCTGCCGATCACAACA
CAAAGGCACGCGTTTGTATCCCGTTAAGTACGTCTCGCTCCGACAATGCG
CCAGCCAGCCAGCGTTGGTTGCTCCGGGAGAGTCGCGAGTCGAATCACCC
GGACGGGTCACGTGTAGGCTAAAAAAAAGAAAGCCGCCGTAGTTGTTGTT
GTTGTTGTTGTTGTTGGTGTAGTTGTTGTTTGTTGTTGTTGTTGTCGTTG
TCGTCGTTGTTTGGTGTTGTTGTCGTCGTTCTTGCTTCACATTGGTTCGT
ACATTAAAGAGATCGCTAATTCCGAAAATCTAGCAACTCACGGCACGTGG
TCACAAAAGCGCTGGAAGAGCCATCACAATATGTACACATGTACCCCCAC
CCCGCAACAACGCCGCGCGTGCACTTTCTGTCTACACGGATGCACCAAGG
ACCCCCGGCGGGAAAGGGCGGCGAGGACAAGAGAGGTGCCGGCGAAAATG
ACCAAGATCCTCGCCTCTACGCCGTCAGGATTGCGCGCGCGACGGGGATT
GAGTGGGGCACGGACATAAGCTTCTCGTGGGTCTATGTCCGGGCGTTGGA
GCCGGACGGGGCCGCGGCCAACTGCGGGGAAATCTCCGTGGGAGATCAGG
TGTGTGCGGGGGCGGGGCGGGGCGGGGCGGAGGGGAGGGGAGGGGAGGGG
AGAGGGTGTGTGTGTTTTGTGTGTTTTGTTTTTACGCTTGATGCTGAACA
AGCACCATCGACTCGTTTTTGTTTTGTTTTTGTTTTACATACTTCTATGT
ACTACCGTCCGCGCGGCGGCCACCGCGCGCGAGTGCATACCGCAACTGCT
GTCACGCACCAACCACGCAGTCGGCGTCGCTCGGAACCCATCATATATAG
AACCGAGATAACCAGGTTGGGGCTGTATGTATGAGATAGTATCGCTCAAC
GCTCAACCCTTTCTTTGTCCCTCGCCTTTCCCACCCCTCAAATCCCCGAC
CCCCCCCGCTTGCGCGCGCGCCTGCCACACGCGCGCCGCCCGCAGCTGAT
TGCGATAAACGATCAGACGCTCGCGGGGGCACCGTTTGACGCGGCGATGG
ACGCTTTGATTGGTCTGGAGGGCCCTGACGTGGAGTTCACCCTGTTCAGG
GGCTCCACGGACGACCTTAAGGAGGTCGTCGGTGAGTGCCTGCTACTACT
AACTGTAGGCTGAATGAAGGCAGCAGGTACTCGGCAGTTGAGGCACGGCA
GGGCAGGGTAGGCCAGGGCAGGGCGATGCCTCTCCGTGTCGTGCCCGAAT
CAGAAGGATTCCACCACGATCGCCACTCGCTCGGCGGTGGCGGTTTTGGG
TGTATCGTTCTCTTGGGGCGTGGTGGCGGTCTGGCGGTGTGGTGGGCGTT
CAAGAAAACCATGTCTCGCTTGCATAGTCTATGTAGACGATGGAGAGTGC
AGCTGATGCTTCTGCCGACTCGGGGGTGGCCGAAACGTTAACGTTTGCCG
CGCAGACTCCATCCACAGCGCGTGCTGCTCTGCAAATGCTACTGCTGCAG
CAGTAGTCGTGCTCGATAAGAGTAATGTAGCCGATGCTACAATAAAAGCT
ATATTTTTGGTCGCGTCGCATTCCCACAGATTACATCGATTTTTTGTTTG
TTGTTGCTCATATCTTTCTTTGGCTGTGTGTGTGTATGTGTGTGCCCTTC
CGACCGATTCCGCCTTTCAAGCCGCCTGCACATGATCGATTTCCATACGC
ACACGCCGCAGGCGCGAAAGGCCCTCCGCCACAGATCACCGTGACAGTGA
AGCAGGACGGGAAGCCGGAGGTAGCCCTCACGGCGCCCTCGGGAGCCAAC
CTGAGGGACTTTCTCACGGAGAACGGCATCAACGTGTACCAGTCCGTCAC
GCGCTGGACCAACTGCAAGGGGAAACAGCTGTGCGGGTAAGCGGTAGACT
ATTTAGTGAAAAAAGAGGGCATATATGTATCTTTTATGTGAGCGCCTTTT
TTATTGCATTTTTATTTAATGCATACAAATGTCAGCAGCCTACGTCCAGT
CTGTGAAAGTGTCGTTCCAGAGGGAACTGCTGTTGTAGGCACACTAACCC
CCCTCTTTCCGTCCAAGACATACTCGCACAAAATCCGTTATCCATTTATA
CGCAGTTCGTTGGTGAAAAATTCGTTTCGAACCACTCGTTTTATGTGTGT
GTCCGCTCGCACGGACAAACAAAACACATCAACAAAAAGTGTCCGCACGC
ACACGGAGAGACAGTAAGACATAAAAAAACACAGCTTATGCATATCGTGT
TTTTTTTAGAACGGAGTTTGCCCGCATACCGTTGTCGGCGAAGACAGCGT
GTTTGGTGCGGTAGTCTACGCAGGTTTTTGGTCGGCGAAACATATGGGAT
AAAGTATGGAATCGGGGAATGTTTGGCGGGGTCGGTAGTTAGGGTTACGG
TTACGGTTACGGAACCCCTACTACTCTATTTCACACATAAACCAATATTC
CCCGTTTTTTCTCGCGAAGGCAGTCCGTTTGGTGTCCCGACCAAGTGTGG
TGGTGCTTGCTTTTGGAAACGCTTCATACATTTGGAATAGGTTTAAGGCT
CGCTCCGCCCCACACCGCCCTCTTGTGTTGCTGACAGCTGATATTGTGGT
CTCTCTCTTCCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTTTTC
CATCTAAATCCCACGCGGCATGCAGCACGTGCATAGTGGAGATCAACGAG
GGTCTGGAGAGCACGACGATTCGATCTCTCGACGAGAGCTCCACCCTGAG
AGACAACCCGGCCAGCTACAGGCTGTCGTGCGTGACCAACATGTACGACG
ACGTGACGGTCACGGTGTTCCCACCCGTCGGGGCCGCGCAGTGGACCCGA
TGAGTAACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2016:8175..13185-

>mRNA_L-elsbetiae_contig2016.6065.1 ID=mRNA_L-elsbetiae_contig2016.6065.1|Name=mRNA_L-elsbetiae_contig2016.6065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2022bp|location=Sequence derived from alignment at L-elsbetiae_contig2016:8175..13185- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGTTGACGCGATCAGTGGTGAAGGGAGGAGTTTGTGCCGTATT
TATCTCCCACTGCGCCGCGTTCACGCTGTCGCCAGCACCCACCCTCCCAT
CTCCTTCCCGAGCAGCAGCGGAGCATGTCACCAGGAGGAGGAGCACCACA
AGCAGGTTCTTGCCTGATCGACGAGCTGATTGTCTAGCTGGCGGCTCTCG
CGTGCCTGGTTTCGCTCTGGATGGCGCGGTTGACGCGATCAGTGGTGAAG
GGAGGAGTTTGTGCCGTATTTATCTCCCACTGCGCCGCGTTCACGCTGTC
GCCAGCACCCACCCTCCCATCTCCTTCCCGAGCAGCAGCGGAGCATGTCA
CCAGGAGGAGGAGCACCACAAGCAGGTTCTTGCCTGATCGACGAGCTGAT
TGTCTAGCTGGCGGCTCTCGCGTGCCTGGTTTCGCTCTGGGCGCGGCGAA
AGACTGGCTCAAAGGAGGCTCTCAGGGAAAGTACGGACCTGAGGGGGGCA
CTGCTGGTGCCAAACCCAAAAATCAATCTTCTTCGGGTACAGGCGCGGCG
AAAGACTGGCTCAAAGGAGGCTCTCAGGGAAAGTACGGACCTGAGGGGGG
CACTGCTGGTGCCAAACCCAAAAATCAATCTTCTTCGGGTACAGGACCCC
CGGCGGGAAAGGGCGGCGAGGACAAGAGAGGTGCCGGCGAAAATGACCAA
GATCCTCGCCTCTACGCCGTCAGGATTGCGCGCGCGACGGGGATTGAGTG
GGGCACGGACATAAGCTTCTCGTGGGTCTATGTCCGGGCGTTGGAGCCGG
ACGGGGCCGCGGCCAACTGCGGGGAAATCTCCGTGGGAGATCAGGACCCC
CGGCGGGAAAGGGCGGCGAGGACAAGAGAGGTGCCGGCGAAAATGACCAA
GATCCTCGCCTCTACGCCGTCAGGATTGCGCGCGCGACGGGGATTGAGTG
GGGCACGGACATAAGCTTCTCGTGGGTCTATGTCCGGGCGTTGGAGCCGG
ACGGGGCCGCGGCCAACTGCGGGGAAATCTCCGTGGGAGATCAGCTGATT
GCGATAAACGATCAGACGCTCGCGGGGGCACCGTTTGACGCGGCGATGGA
CGCTTTGATTGGTCTGGAGGGCCCTGACGTGGAGTTCACCCTGTTCAGGG
GCTCCACGGACGACCTTAAGGAGGTCGTCGCTGATTGCGATAAACGATCA
GACGCTCGCGGGGGCACCGTTTGACGCGGCGATGGACGCTTTGATTGGTC
TGGAGGGCCCTGACGTGGAGTTCACCCTGTTCAGGGGCTCCACGGACGAC
CTTAAGGAGGTCGTCGGCGCGAAAGGCCCTCCGCCACAGATCACCGTGAC
AGTGAAGCAGGACGGGAAGCCGGAGGTAGCCCTCACGGCGCCCTCGGGAG
CCAACCTGAGGGACTTTCTCACGGAGAACGGCATCAACGTGTACCAGTCC
GTCACGCGCTGGACCAACTGCAAGGGGAAACAGCTGTGCGGGCGCGAAAG
GCCCTCCGCCACAGATCACCGTGACAGTGAAGCAGGACGGGAAGCCGGAG
GTAGCCCTCACGGCGCCCTCGGGAGCCAACCTGAGGGACTTTCTCACGGA
GAACGGCATCAACGTGTACCAGTCCGTCACGCGCTGGACCAACTGCAAGG
GGAAACAGCTGTGCGGCACGTGCATAGTGGAGATCAACGAGGGTCTGGAG
AGCACGACGATTCGATCTCTCGACGAGAGCTCCACCCTGAGAGACAACCC
GGCCAGCTACAGGCTGTCGTGCGTGACCAACATGTACGACGACGTGACGG
TCACGGTGTTCCCACCCGTCGGGGCCGCGCAGTGGACCCGATGACACGTG
CATAGTGGAGATCAACGAGGGTCTGGAGAGCACGACGATTCGATCTCTCG
ACGAGAGCTCCACCCTGAGAGACAACCCGGCCAGCTACAGGCTGTCGTGC
GTGACCAACATGTACGACGACGTGACGGTCACGGTGTTCCCACCCGTCGG
GGCCGCGCAGTGGACCCGATGA
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