mRNA_L-elsbetiae_contig20142.6059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20142.6059.1
Unique NamemRNA_L-elsbetiae_contig20142.6059.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.750e-34
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 MSAIVYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            MSA+VYEEV L EM+Y DSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLF+E
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEE 62
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.180e-23
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    7 AIVYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLF 180
            ++VYEEV LA+M ++ +EQMY Y CPCGD FEISLEDL DGEDIAPCPSCTL+I+VL+
Sbjct:    4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLY 61
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.070e-22
Identity = 38/58 (65.52%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            VYEEV L +M Y+++  M++Y+CPCGD FEISLE+L+DGEDIAPCPSC+L+I+VL++E
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEE 60
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 2.460e-21
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 AIVYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            A VY+EV++ +M ++  EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F E
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDE 61
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 4.570e-21
Identity = 36/58 (62.07%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            VY+EV++ +M Y+  EQ+YYY CPCGDKF I+L++LYDGEDIA CPSC+L ++V+F+E
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEE 60
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.960e-21
Identity = 35/58 (60.34%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            VY+EV++ +M ++++EQ+YYY CPCGDKF I L++LYDGEDIA CPSC+L I+++F E
Sbjct:    3 VYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDE 60
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.090e-21
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            VY+EV++ +M +   EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F E
Sbjct:    3 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDE 60
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 6.020e-21
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 AIVYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            A VY+EV++ +M ++  EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F E
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDE 61
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.010e-20
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            VY+EV++ +M +   EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F E
Sbjct:   27 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDE 84
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BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Match: B7FR47_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FR47_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 1.990e-20
Identity = 34/58 (58.62%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   13 VYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKE 186
            +YEEV++ +MI+++ E +Y Y CPCGDKF I+LE+L++GED+A CPSCTL+I V+F+E
Sbjct:    3 IYEEVEIEDMIFDEDELVYTYPCPCGDKFRITLEELWEGEDVAKCPSCTLRIMVIFEE 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20142.6059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI1.750e-3490.32DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z4X0_9STRA1.180e-2372.41Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A7S2W7Y0_9STRA5.070e-2265.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G4YJ90_PHYSP2.460e-2161.67DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
K3WTP3_GLOUD4.570e-2162.07DPH-type MB domain-containing protein n=1 Tax=Glob... [more]
A0A1V9ZHU1_9STRA4.960e-2160.34Diphthamide biosynthesis protein n=1 Tax=Achlya hy... [more]
A0A662X3X8_9STRA5.090e-2165.52DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A6A4D2K3_9STRA6.020e-2161.67DPH-type MB domain-containing protein n=3 Tax=Phyt... [more]
A0A662Y1E6_9STRA1.010e-2065.52DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
B7FR47_PHATC1.990e-2058.62Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20142contigL-elsbetiae_contig20142:1333..1518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue9.2e-26
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.619827-CDS-L-elsbetiae_contig20142:1332..15181622815833.619827-CDS-L-elsbetiae_contig20142:1332..1518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20142 1333..1518 +
1691683133.4948423-CDS-L-elsbetiae_contig20142:1332..15181691683133.4948423-CDS-L-elsbetiae_contig20142:1332..1518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20142 1333..1518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20142.6059.1prot_L-elsbetiae_contig20142.6059.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20142 1333..1518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20142.6059.1

>prot_L-elsbetiae_contig20142.6059.1 ID=prot_L-elsbetiae_contig20142.6059.1|Name=mRNA_L-elsbetiae_contig20142.6059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MSAIVYEEVDLAEMIYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCP
SCTLQIKVLFKE
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mRNA from alignment at L-elsbetiae_contig20142:1333..1518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20142.6059.1 ID=mRNA_L-elsbetiae_contig20142.6059.1|Name=mRNA_L-elsbetiae_contig20142.6059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig20142:1333..1518+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCAATTGTGTATGAAGAGGTGGACCTGGCGGAGATGATCTACGA
AGACTCTGAGCAGATGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCG
AGATTTCGCTTGAGGACCTCTACGACGGGGAGGACATCGCGCCATGTCCC
AGCTGTACGTTGCAGATCAAGGTCCTTTTCAAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20142:1333..1518+

>mRNA_L-elsbetiae_contig20142.6059.1 ID=mRNA_L-elsbetiae_contig20142.6059.1|Name=mRNA_L-elsbetiae_contig20142.6059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig20142:1333..1518+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCAATTGTGTATGAAGAGGTGGACCTGGCGGAGATGATCTACGA
AGACTCTGAGCAGATGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCG
AGATTTCGCTTGAGGACCTCTACGACGGGGAGGACATCGCGCCATGTCCC
AGCTGTACGTTGCAGATCAAGGTCCTTTTCAAGGAGATGTCCGCAATTGT
GTATGAAGAGGTGGACCTGGCGGAGATGATCTACGAAGACTCTGAGCAGA
TGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCGAGATTTCGCTTGAG
GACCTCTACGACGGGGAGGACATCGCGCCATGTCCCAGCTGTACGTTGCA
GATCAAGGTCCTTTTCAAGGAG
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