mRNA_L-elsbetiae_contig2014.6058.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2014.6058.1
Unique NamemRNA_L-elsbetiae_contig2014.6058.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 492 bits (1267), Expect = 2.730e-166
Identity = 300/394 (76.14%), Postives = 314/394 (79.70%), Query Frame = 3 
Query:  678 KDPSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCC----RGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFLRRLEEGTAGGSLGAGXXXXXXXRRMXXXXXXXXXK--RRDAEAGGM-----SPPRQGDSSLRGEGLDSRRSGDGRGAYAGXXXXXXXXXXSRSVGGTWGGARGKKGARIRKGVGAPMSRGDNSARGRAQQ 1826
            KDPS+MRLSRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVGPRDIVKV V  G       G  C    +G+ LERPE HTPKLWMVHK RNELVTRHDPEGR TVFDRL KLK+PDTLMPVGRLDYNTEGLLLLTNDGDLAR MELPSS+IVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVA VEIPKAF+RRLE+G  GGS G  XXXXXXX   XXXXXXXXX   RR+ EAGGM     S P  G S+  G G D+   GD  G+  G           R  G +WG    K G RIRKGVGAPMSRGDNSAR  AQQ
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNV--GLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGSPGGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSPGTGLSNTVGGGRDT---GDRAGSSGGRHWGGGF----RGAGRSWGE---KGGPRIRKGVGAPMSRGDNSARPTAQQ 487
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 2.160e-77
Identity = 138/195 (70.77%), Postives = 152/195 (77.95%), Query Frame = 3 
Query:  645 GHVDEVLRSQIKDPSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKV----RLGSLVPFR----------------IGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGN 1169
            G+ + +   +IKDPS+MRLSRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVGPRDIVKV V    +LG+   +R                +     G+ LERPE HTPKLWMVHK RNELVTR DPEGR TVFDRLAKLK+PDTLMPVGRLDYNTEGLLLLTNDGDLAR MELPSS+IVRTYSVRVYGN
Sbjct:   97 GYGEALPPPKIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGN 291
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 232 bits (592), Expect = 7.340e-66
Identity = 134/304 (44.08%), Postives = 180/304 (59.21%), Query Frame = 3 
Query:  609 EEHSASGVDESEGHVDEVLRSQI--KDPSMMRLSRRIARSGMASRREAERLVEAGVVT--------------VNGTPVQTPALNVGPRDIVKV--KVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFLRRL 1466
            EE   +G +  E H +   + Q   K   +MRL++RIARSG +SRREAERL++ G V               +NG    +PA+NV   D V+V  K     + P R+                   W VHK R ELV R D +GR  V +R+  + + D L PVGRLD+ TEGLLLLT+DGDLAR +E P+  + R Y VRV+G++T EKLR M+ GC I+GV YKGM V ++ G     E  N WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ +GGVA V + + FL+++
Sbjct:   10 EEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVDGKELSTHIAPARV-------------------WAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQV 289
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.230e-60
Identity = 138/216 (63.89%), Postives = 145/216 (67.13%), Query Frame = 3 
Query: 1194 MRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFLRRLEEGTAGGSLGAGXXXXXXXRRMXXXXXXXXXKRRDAEAGGM-----SPPRQGDSSLRGEGLDSRRSGDGRGAYAGXXXXXXXXXXSRSVGGTWGGARGKKGARIRKGVGAPMSRGDNSARGRAQQ 1826
            MRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGK      ICKYLCLTVNRLART YGPFSLGKVRAGGVA VEIPKAF+RRLE+G  GGS G  XXXXX               RR+ EAG M     S P  G+SS  G G D+    D R   +G           R  G +WGG   K G RIRKGVGAPMSRGDNSAR  AQQ
Sbjct:    1 MRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGK------ICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGSPGGAXXXXXGTSGRRLGPGPGNGMRRELEAGRMRVSEVSSPGGGNSSTVGGGRDT----DDRAISSGGRHWGDGF---RGAGRSWGG---KGGPRIRKGVGAPMSRGDNSARPTAQQ 198
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A3VHQ4_9RHOB (Pseudouridine synthase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A3VHQ4_9RHOB)

HSP 1 Score: 206 bits (523), Expect = 5.880e-58
Identity = 121/254 (47.64%), Postives = 163/254 (64.17%), Query Frame = 3 
Query:  678 KDPSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVE 1439
            K P   R+++ ++R+G+ASRREAER++EAG V+VNG  + +PALNV PRD + V    G+LV             E+PE   P+LW+ HK    + T  D +GR TVFD+L +  MP  +M VGRLD N+EGLLLLTNDG + R +ELPS+  VR Y VRV G   E  L  +R G T+DG  ++GM V ++      ++G NAWLTI   EGKNR+IR+  + + LTVNRL R  YGPF LG+++AG V  V+
Sbjct:   31 KTPPGDRIAKVLSRAGVASRREAERMIEAGRVSVNGKVIDSPALNVTPRDKITVD---GTLV-------------EKPE--APRLWLYHKPTGLVTTERDEKGRETVFDKLPE-DMP-RVMSVGRLDLNSEGLLLLTNDGGIKRKLELPSTGWVRKYRVRVNGKPEEAVLEKLRKGITVDGEAFQGMSVTLDR-----QQGANAWLTIGLREGKNREIRRAMEAVGLTVNRLIRISYGPFRLGELKAGAVEEVK 259
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A192ILM9_9HYPH (Pseudouridine synthase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192ILM9_9HYPH)

HSP 1 Score: 204 bits (518), Expect = 9.110e-58
Identity = 117/260 (45.00%), Postives = 163/260 (62.69%), Query Frame = 3 
Query:  696 RLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFLRRLEEG 1475
            R+++R+AR+G+ASRREAER++EAG V +NG  +++PA+NVGP D ++V                 G+A+  P+  + +LW  HK    L T  D  GRAT++D L K ++P  ++PVGRLD N+EGLLLLTNDG L R +ELP +   RTY VR YG +  E L  ++ G T+DG ++  + V  E  GG     RN WLT+   EG+NR++R+    + LTVNRL RT YGPF LG++ +G V  VE+P   LRR   G
Sbjct:    6 RIAKRLARAGIASRREAERMIEAGRVKLNGQVLKSPAVNVGPDDTIEVD----------------GKAVGEPD--SIRLWRYHKPAGLLTTARDDLGRATIYDHLPK-RLP-RVVPVGRLDLNSEGLLLLTNDGGLKRGLELPGNAWTRTYRVRAYGAVKPELLEDLKRGITVDGEKFGAIEVTAERSGG-----RNTWLTVSLNEGRNREVRRALDAVGLTVNRLIRTAYGPFRLGELGSGQV--VEVPGNELRRAARG 238
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: UPI001F20AC47 (rRNA pseudouridine synthase n=2 Tax=unclassified Octadecabacter TaxID=196158 RepID=UPI001F20AC47)

HSP 1 Score: 204 bits (518), Expect = 2.780e-57
Identity = 118/254 (46.46%), Postives = 161/254 (63.39%), Query Frame = 3 
Query:  678 KDPSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVE 1439
            K PS  R+++ +AR+G+ASRREAE+++EAG VTVNG  + TPALNV  RD + V                 G+ L  PE   P++W+ HK    + T  D +GR TVFD L K  MP  +M VGRLD N+EGLLLLTNDG L R MELP++  +R Y VR+ G+++E KL  +R+G  +DGVRY G+ V+ +      ++G NAWLT+   EGKNR+IR++ +   + VNRL R  YGPF LG ++ G V  V+
Sbjct:    7 KTPSGDRIAKVLARAGIASRREAEKIIEAGRVTVNGKTILTPALNVTRRDRIVVD----------------GKELAEPE--APRIWIYHKPAGLVTTERDEKGRDTVFDALPK-DMP-RVMSVGRLDINSEGLLLLTNDGALKRTMELPATGWLRRYRVRIKGSLSEAKLDELRAGIEVDGVRYAGVEVKFDR-----QQGANAWLTMGLREGKNREIRRLMEAQGVIVNRLLRISYGPFQLGTLKPGAVEEVK 235
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A7Y7D4K3_9HYPH (Pseudouridine synthase n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A7Y7D4K3_9HYPH)

HSP 1 Score: 204 bits (518), Expect = 3.420e-57
Identity = 118/257 (45.91%), Postives = 162/257 (63.04%), Query Frame = 3 
Query:  696 RLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPD---TLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFL 1457
            R+++ IAR+G+ SRREAER++EAG VTV+G  + +PALNV P +I+ V                 G+AL  P+   P+LW  HK R  + T +DPEGR TVFD+L     PD    ++ VGRLD+NTEGLLLLTNDG+LAR +E P+S +VR Y VRV+G + E+ L A++ G  IDGV+Y  +   ++      ++G NAW+ I   EGKNR++R+I + L   V RL RT YGP  LGK+  G +   EIP+  L
Sbjct:   12 RIAKVIARAGVCSRREAERMIEAGRVTVDGKKIDSPALNVVPTNIIVVD----------------GKAL--PDKQPPRLWKFHKARGLITTNNDPEGRPTVFDQL-----PDGTPRVISVGRLDFNTEGLLLLTNDGELARFLEKPNSGMVRRYRVRVHGRVNEDDLAALKEGPVIDGVQYGPVEAILDV-----QKGANAWININIREGKNREVRRIMESLGYEVTRLIRTDYGPVQLGKLERGHME--EIPRKAL 238
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A7X4D014_9PROT (Pseudouridine synthase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4D014_9PROT)

HSP 1 Score: 203 bits (516), Expect = 4.410e-57
Identity = 125/260 (48.08%), Postives = 156/260 (60.00%), Query Frame = 3 
Query:  684 PSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARVEIPKAFLRR 1463
            P   R+++RIAR+G+ SRREAER + AG V+V+G  + TPA  V P   V V                 GR L+  E   P LW  HK    + T  DP+GR T+FDRL    +P  ++ VGRLD  TEGLLLLTNDGDLAR +ELPS+   R Y VRV G   E  L  +  G T+DGVRY  +  R++   G+   G NAWLT+   EGKNR+IRK+C +L LT NRL RT YGPF LGK+ AG V RV  P+  LR+
Sbjct:    9 PKGERIAKRIARAGLCSRREAERWIAAGRVSVDGRVLDTPAFAVLPHHRVTVD----------------GRPLKAKEP--PALWRYHKPAGLVTTNRDPQGRDTIFDRLPA-GLP-RVITVGRLDLTTEGLLLLTNDGDLARFLELPSTGWTRRYRVRVKGRPDEAALARLADGVTVDGVRYGPVQARLDRPPGQSG-GANAWLTMSIREGKNREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVERV--PERVLRQ 245
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BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Match: A0A2E2DYS5_9PROT (Pseudouridine synthase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E2DYS5_9PROT)

HSP 1 Score: 206 bits (523), Expect = 7.690e-57
Identity = 115/247 (46.56%), Postives = 160/247 (64.78%), Query Frame = 3 
Query:  696 RLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRNELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLARLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVARV 1436
            RL++RIAR+G+ SRR+AER +E G V+VNGT + +PALNVGP DIV V                 G+ L  PE    +LW  +K    +VT  D +GRA +F+RL   +MP  ++ +GRLD N+EGLLLLTNDGDLAR +ELP++  +R Y VRV+G +++EKL  + +G T++G+RY  +   +E      ++G NAW+++  TEGKNR+IRK+ +YL   VNRL R  YGPF L  +  GGV  V
Sbjct:   15 RLAKRIARAGLCSRRDAERWIEDGRVSVNGTLIDSPALNVGPDDIVVVD----------------GKPL--PEAQAARLWRYNKPPGLVVTAKDEKGRANIFERLPP-EMP-RVVSIGRLDLNSEGLLLLTNDGDLARRLELPATGWIRRYRVRVHGYVSQEKLDTVANGVTVEGIRYGEIRAELES-----QKGANAWVSVSLTEGKNREIRKVMEYLDYPVNRLIRVAYGPFQLSTLTRGGVEEV 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2014.6058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI2.730e-16676.14RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE2.160e-7770.77S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZDT5_9STRA7.340e-6644.08Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A6H5J790_9PHAE3.230e-6063.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A3VHQ4_9RHOB5.880e-5847.64Pseudouridine synthase n=3 Tax=Roseobacteraceae Ta... [more]
A0A192ILM9_9HYPH9.110e-5845.00Pseudouridine synthase n=2 Tax=Alphaproteobacteria... [more]
UPI001F20AC472.780e-5746.46rRNA pseudouridine synthase n=2 Tax=unclassified O... [more]
A0A7Y7D4K3_9HYPH3.420e-5745.91Pseudouridine synthase n=1 Tax=Methylocystaceae ba... [more]
A0A7X4D014_9PROT4.410e-5748.08Pseudouridine synthase n=2 Tax=Rhodospirillaceae b... [more]
A0A2E2DYS5_9PROT7.690e-5746.56Pseudouridine synthase n=3 Tax=Rhodospirillales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2014contigL-elsbetiae_contig2014:11490..15498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score204.1
Seed ortholog evalue1.8e-49
Seed eggNOG ortholog314271.RB2654_08567
Preferred namerluB
KEGG koko:K06178,ko:K06181,ko:K06182,ko:K06183
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Belongs to the pseudouridine synthase RsuA family
EggNOG OGs1MUCE@1224,2TQP2@28211,COG1187@1,COG1187@2
EC5.4.99.19,5.4.99.20,5.4.99.21,5.4.99.22
COG Functional cat.J
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons6
Model size1841
Cds size1785
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.50872-CDS-L-elsbetiae_contig2014:11489..120111622815833.50872-CDS-L-elsbetiae_contig2014:11489..12011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 11490..12011 -
1691683133.406699-CDS-L-elsbetiae_contig2014:11489..120111691683133.406699-CDS-L-elsbetiae_contig2014:11489..12011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 11490..12011 -
1622815833.5227234-CDS-L-elsbetiae_contig2014:12797..129471622815833.5227234-CDS-L-elsbetiae_contig2014:12797..12947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 12798..12947 -
1691683133.4199862-CDS-L-elsbetiae_contig2014:12797..129471691683133.4199862-CDS-L-elsbetiae_contig2014:12797..12947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 12798..12947 -
1622815833.5364034-CDS-L-elsbetiae_contig2014:13149..132721622815833.5364034-CDS-L-elsbetiae_contig2014:13149..13272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 13150..13272 -
1691683133.4304533-CDS-L-elsbetiae_contig2014:13149..132721691683133.4304533-CDS-L-elsbetiae_contig2014:13149..13272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 13150..13272 -
1622815833.5474503-CDS-L-elsbetiae_contig2014:13714..138701622815833.5474503-CDS-L-elsbetiae_contig2014:13714..13870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 13715..13870 -
1691683133.4451575-CDS-L-elsbetiae_contig2014:13714..138701691683133.4451575-CDS-L-elsbetiae_contig2014:13714..13870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 13715..13870 -
1622815833.5608459-CDS-L-elsbetiae_contig2014:14006..148401622815833.5608459-CDS-L-elsbetiae_contig2014:14006..14840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 14007..14840 -
1691683133.4584703-CDS-L-elsbetiae_contig2014:14006..148401691683133.4584703-CDS-L-elsbetiae_contig2014:14006..14840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 14007..14840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.5713894-UTR-L-elsbetiae_contig2014:14840..148561622815833.5713894-UTR-L-elsbetiae_contig2014:14840..14856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 14841..14856 -
1691683133.4690557-UTR-L-elsbetiae_contig2014:14840..148561691683133.4690557-UTR-L-elsbetiae_contig2014:14840..14856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 14841..14856 -
1622815833.58331-UTR-L-elsbetiae_contig2014:15458..154981622815833.58331-UTR-L-elsbetiae_contig2014:15458..15498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 15459..15498 -
1691683133.479129-UTR-L-elsbetiae_contig2014:15458..154981691683133.479129-UTR-L-elsbetiae_contig2014:15458..15498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 15459..15498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2014.6058.1prot_L-elsbetiae_contig2014.6058.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2014 11490..14840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2014.6058.1

>prot_L-elsbetiae_contig2014.6058.1 ID=prot_L-elsbetiae_contig2014.6058.1|Name=mRNA_L-elsbetiae_contig2014.6058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=595bp
MLSIARHARGPCRRRQALLSARRAGLSATAVPARRTAAAGLRLLRLLPPH
EAAAPAAPSARRPPPLPQALLCLRRDDRLSSGAAGGVVSYARRALASSAT
VRGADSTEGNTGESGIRGRQLEKEHGGAGVAVSGGAADGWEEEEREPKAD
VGAPFDFLPEFSDDFGAEGDAFLGTEEEEEEEEGEEHSASGVDESEGHVD
EVLRSQIKDPSMMRLSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPA
LNVGPRDIVKVKVRLGSLVPFRIGRCCRGRALERPEDHTPKLWMVHKTRN
ELVTRHDPEGRATVFDRLAKLKMPDTLMPVGRLDYNTEGLLLLTNDGDLA
RLMELPSSDIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEG
GGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLG
KVRAGGVARVEIPKAFLRRLEEGTAGGSLGAGGGGGGSGRRMAGGPGPGT
GKRRDAEAGGMSPPRQGDSSLRGEGLDSRRSGDGRGAYAGAYAGGGGSGG
SRSVGGTWGGARGKKGARIRKGVGAPMSRGDNSARGRAQQQRAR*
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mRNA from alignment at L-elsbetiae_contig2014:11490..15498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2014.6058.1 ID=mRNA_L-elsbetiae_contig2014.6058.1|Name=mRNA_L-elsbetiae_contig2014.6058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4009bp|location=Sequence derived from alignment at L-elsbetiae_contig2014:11490..15498- (Laminarionema elsbetiae ELsaHSoW15)
GTGCAGGCCGCGCGTCCATTGGTTCGGGACAAGGCTGCAGGTGAGAAATC
GCGCAGAGTACTTCGTGCTTAGGAAGAGTTCTCATGTAGCGGTGAGCTTG
CAATCATGGTTTGATATTTTGAAGATGTCTTGTTTCGGACTACATTATGT
TGTGGCTGTCTCTCTGCCTAAAAGGCGACAGAGGACACAGCAATCACGCC
AACACCTGCACAGAATCTCGTGGGCCAAACAGCTTCGCCTCAGTCTGGTA
AACACTGGTTGAGCCATCGGAATCGGAGTGTGCACGACTGGTACGTATGC
TGAAATCACAGCTACATGCAGTAACCGACCCCTTTTGCGCTTGTGAAGCC
GTCCAACAAATACTGTTGTGCTGTCGGTGCAGAAGAACGGGCTCCAAGTT
CGGTGGGCGTGCTTTGGTAATGCTGTTGTTTCGTCTCCTACGGCAGCAGT
GTTTGCCCAAGTGTATACAACCGGTACGTCAAAACGTCAGAACACATACT
TGGAACGGCAGTGGCATCATTTTGTGGCGAGAAGAGCATGACGTCCCAGC
CGGCTTCGACTGAAACCACCTACAAACGCTCTCTCCCGACGACGACCCTC
ACCACCCCGTCACCCAACCCCCGCCATTTCGACCGTTGCCAGAGCCCGAA
TATAGAAAATGCTTTCAATCGCGCGTCACGCGCGAGGGCCATGCCGGCGG
CGCCAGGCACTGCTGTCCGCGCGGAGAGCGGGACTGTCAGCAACCGCCGT
GCCCGCCCGGCGCACGGCTGCCGCAGGCCTTCGCCTCCTTCGGCTTCTCC
CCCCCCACGAGGCGGCGGCACCAGCCGCACCATCCGCTAGAAGACCACCG
CCGTTGCCGCAAGCGCTTCTATGCTTGCGGCGCGATGATCGCCTTTCCTC
GGGAGCGGCTGGAGGAGTGGTGTCCTACGCACGGCGGGCGTTGGCGTCGT
CGGCGACGGTCCGAGGCGCTGATAGCACGGAAGGTAACACGGGGGAGTCA
GGGATTAGAGGGCGGCAGCTAGAGAAGGAACACGGTGGTGCTGGTGTTGC
TGTCAGTGGCGGCGCGGCTGACGGATGGGAGGAAGAAGAGCGCGAGCCAA
AGGCAGATGTCGGAGCTCCATTCGACTTCCTCCCTGAGTTCAGCGATGAC
TTCGGTGCGGAGGGGGATGCTTTCCTGGGGACGGAGGAGGAGGAGGAGGA
GGAGGAGGGGGAGGAGCACAGCGCCTCTGGCGTGGACGAAAGCGAGGGGC
ACGTGGACGAGGTGCTGCGGTCGCAGATCAAGGACCCTTCCATGATGCGC
CTGTCTCGCCGCATCGCGAGGTCCGGCATGGCGTCCCGTCGAGAGGCCGA
GCGCCTGGTGGAGGCGGGGGTGGTGACGGTGAACGGAACACCGGTGCAGA
CCCCGGCGCTAAACGTGGGGCCTCGAGACATCGTCAAAGTCAAGGTTAGG
TTAGGCTCTTTGGTACCTTTTCGAATTGGGCGCTGCTGTAGGGTACGGGG
CGGGCCGGCACTCCGTCCAGTTGTATGTTTGCTTGTTTGTTTGTGTGTCG
GACGGTCCCGTGCTTAATTGTTTTCTTTTTAACGTCACGTGCCATTCGTC
TGTCAATGTCGATGTTGATGGCCGCCAGGGGAGGGCACTGGAGCGGCCGG
AGGACCACACGCCCAAGCTGTGGATGGTGCACAAGACTAGGAACGAGCTC
GTCACGAGGCACGATCCGGAGGGGCGGGCGACCGTGTTCGACAGGCTGGC
CAAGCTCAAGATGCCCGACACGCTCATGCCGGTGGTGCGTGCACACGGGT
GTTATATATGGCGCGCGTACACGTGCAGCAGTTGTTTTGGGCCTGGTGTG
TGCTCCCGTTTGTGTGTTCCGTATTCGGCGCCACCATTTTCGACGCTTTG
TTCGTATATTCTACGAGTGATGTTGAGGTAGGGAATGCGTGCAGAAACGC
TCTTTACGGTACTGCTTCGGTTGATAAGCGTACATAAGGATCGAAAAGAT
CGAGTTTTGAGCCAGCTGTGCACGAAGTGTAGAGTTCTCCGACCACTTTT
TTCATGGCATCTATGTGTGTATCTGCACGTGTAACATTTCATCACGGATG
GCTTGTCTCAAACGCGGAAAGAGTTGGGTTGCAAGACCATGTAGACTACA
TAGTGCCTCAGTTCTTGGAATGTCCCTCTATTCCTGGCGGCGACAAAACG
CGGCGATTCTCTGCTCTCTTGCGCAGGGCCGATTGGACTACAACACGGAA
GGTCTCCTGCTGTTGACTAACGACGGAGACCTAGCCCGCCTGATGGAGCT
GCCGAGCAGTGACATCGTCCGGACCTACTCCGTCCGCGTGTACGGAAACG
TGAGCATGACGTCATACAGACGAAGCATATCGGCTCGCTCTCATCCACGC
ACCACGGTCCTGCCGATGTTGGTTTTGCCGTGGTTTTTGAAGAGGCCAGA
AGTTTGTAACAACTGCTGTGTTGACAATAGGTTTGGTGTATCGTGTTTGT
TTCCTCACGGTTTATTTGTTGATGGTGGACCGTTTTTGCTTCACCGCGCA
GATAACGGAAGAGAAGCTGAGGGCCATGCGGAGCGGCTGCACCATCGACG
GAGTCCGGTACAAGGGCATGTTCGTGAGGGTCGAGGGGGGCGGCGGCAAG
GGGCGGGAGGGCCGCAACGCCTGGCTGACCATCGAGTGCACCGAGGGAAA
AGTGAGTGTGTAAATGATAGCACGTTTCCATTGTGGACAGCTGTTTAGCT
GTTATTTATTCGCTTTTCTGGGCACCGAAGGAGAAATGCTTGCGGAAATA
TAGACTAATTCGTGATTTTATAGCCTTTTATCGTTTTTTCCTTGAATGTC
GACTCAAGCCCAAGATAGAGGCGTGCCCTCCCGCACTTCCCTGGAGGATG
TTATACCGGTGTGGTGTAACTCAAAATACAGCCGGAAACTGATTTTCCTC
TTCGTACCCAAATACGTTATGGGGACTGAGACAACAAAATTCACCCCCCC
ACAACAGTATTGCCATTTTCGCACGCCAGAGGACGTATGTCGGCCCCCTC
CTCCCCCCACAGTTGTACATGTATCTCTCTTCTCGTTCCCTTCAGCCTTC
TGGCACAGCTGAAGGTGGTCATACGTAGAAATGTGCTCAACGGAACAACG
CCCCGAGGCTCTTATCCCTTGTCCTCGGCAATCCAACGCGTGCTCTGGCC
GGGATTTGGCTCGTCAGTTCAAGCGTCGATATGACAACGCACGCCTAGCG
GCCCATACGTTGACGGCCAAGGCTGATCTCCCTCCCTTTCCCTGTGCACG
GTGGATGCCGCCCCCCACGACTATGACAACCAGAAACCCCAAAACATAAA
AAAAAATATATACTTCATAAAAAAGTCTGCACGGCTGTAAAAGAACGGGA
ACAGTAGTACGAGGGGATTGAGATATTCCGTGCTAACCCCCGCTCGTATT
GTTTCTCTTTCGCCCACTTCACGGACCCCCTGGACAGAACCGGCAAATCC
GCAAGATCTGCAAGTACCTGTGCCTGACCGTGAACCGGCTGGCCAGGACC
CGCTACGGCCCCTTCAGCCTCGGCAAGGTCCGGGCCGGCGGGGTAGCCCG
CGTGGAAATCCCGAAGGCGTTTCTGCGGCGCCTGGAGGAGGGCACCGCCG
GAGGATCACTGGGGGCAGGCGGAGGCGGCGGCGGTAGTGGCAGGCGAATG
GCAGGGGGGCCGGGGCCTGGAACAGGGAAGCGCCGGGATGCAGAGGCTGG
CGGTATGTCGCCGCCGCGCCAAGGGGACTCGTCTTTGAGAGGGGAAGGGT
TGGACAGTAGGAGGAGCGGTGATGGTAGAGGAGCGTATGCTGGAGCGTAT
GCTGGAGGAGGGGGGAGTGGTGGTTCAAGAAGCGTAGGCGGTACTTGGGG
AGGGGCGAGGGGGAAGAAGGGGGCCCGAATACGAAAGGGGGTGGGGGCTC
CCATGTCTAGGGGAGATAACTCCGCGCGAGGTAGGGCGCAGCAGCAGCGT
GCGCGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2014:11490..15498-

>mRNA_L-elsbetiae_contig2014.6058.1 ID=mRNA_L-elsbetiae_contig2014.6058.1|Name=mRNA_L-elsbetiae_contig2014.6058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3570bp|location=Sequence derived from alignment at L-elsbetiae_contig2014:11490..15498- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTCAATCGCGCGTCACGCGCGAGGGCCATGCCGGCGGCGCCAGGC
ACTGCTGTCCGCGCGGAGAGCGGGACTGTCAGCAACCGCCGTGCCCGCCC
GGCGCACGGCTGCCGCAGGCCTTCGCCTCCTTCGGCTTCTCCCCCCCCAC
GAGGCGGCGGCACCAGCCGCACCATCCGCTAGAAGACCACCGCCGTTGCC
GCAAGCGCTTCTATGCTTGCGGCGCGATGATCGCCTTTCCTCGGGAGCGG
CTGGAGGAGTGGTGTCCTACGCACGGCGGGCGTTGGCGTCGTCGGCGACG
GTCCGAGGCGCTGATAGCACGGAAGGTAACACGGGGGAGTCAGGGATTAG
AGGGCGGCAGCTAGAGAAGGAACACGGTGGTGCTGGTGTTGCTGTCAGTG
GCGGCGCGGCTGACGGATGGGAGGAAGAAGAGCGCGAGCCAAAGGCAGAT
GTCGGAGCTCCATTCGACTTCCTCCCTGAGTTCAGCGATGACTTCGGTGC
GGAGGGGGATGCTTTCCTGGGGACGGAGGAGGAGGAGGAGGAGGAGGAGG
GGGAGGAGCACAGCGCCTCTGGCGTGGACGAAAGCGAGGGGCACGTGGAC
GAGGTGCTGCGGTCGCAGATCAAGGACCCTTCCATGATGCGCCTGTCTCG
CCGCATCGCGAGGTCCGGCATGGCGTCCCGTCGAGAGGCCGAGCGCCTGG
TGGAGGCGGGGGTGGTGACGGTGAACGGAACACCGGTGCAGACCCCGGCG
CTAAACGTGGGGCCTCGAGACATCGTCAAAGTCAAGGTTAGGTTAGGCTC
TTTGGTACCTTTTCGAATTGGGCGCTGCTGTAGGATGCTTTCAATCGCGC
GTCACGCGCGAGGGCCATGCCGGCGGCGCCAGGCACTGCTGTCCGCGCGG
AGAGCGGGACTGTCAGCAACCGCCGTGCCCGCCCGGCGCACGGCTGCCGC
AGGCCTTCGCCTCCTTCGGCTTCTCCCCCCCCACGAGGCGGCGGCACCAG
CCGCACCATCCGCTAGAAGACCACCGCCGTTGCCGCAAGCGCTTCTATGC
TTGCGGCGCGATGATCGCCTTTCCTCGGGAGCGGCTGGAGGAGTGGTGTC
CTACGCACGGCGGGCGTTGGCGTCGTCGGCGACGGTCCGAGGCGCTGATA
GCACGGAAGGTAACACGGGGGAGTCAGGGATTAGAGGGCGGCAGCTAGAG
AAGGAACACGGTGGTGCTGGTGTTGCTGTCAGTGGCGGCGCGGCTGACGG
ATGGGAGGAAGAAGAGCGCGAGCCAAAGGCAGATGTCGGAGCTCCATTCG
ACTTCCTCCCTGAGTTCAGCGATGACTTCGGTGCGGAGGGGGATGCTTTC
CTGGGGACGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGCACAGCGC
CTCTGGCGTGGACGAAAGCGAGGGGCACGTGGACGAGGTGCTGCGGTCGC
AGATCAAGGACCCTTCCATGATGCGCCTGTCTCGCCGCATCGCGAGGTCC
GGCATGGCGTCCCGTCGAGAGGCCGAGCGCCTGGTGGAGGCGGGGGTGGT
GACGGTGAACGGAACACCGGTGCAGACCCCGGCGCTAAACGTGGGGCCTC
GAGACATCGTCAAAGTCAAGGTTAGGTTAGGCTCTTTGGTACCTTTTCGA
ATTGGGCGCTGCTGTAGGGGGAGGGCACTGGAGCGGCCGGAGGACCACAC
GCCCAAGCTGTGGATGGTGCACAAGACTAGGAACGAGCTCGTCACGAGGC
ACGATCCGGAGGGGCGGGCGACCGTGTTCGACAGGCTGGCCAAGCTCAAG
ATGCCCGACACGCTCATGCCGGTGGGGAGGGCACTGGAGCGGCCGGAGGA
CCACACGCCCAAGCTGTGGATGGTGCACAAGACTAGGAACGAGCTCGTCA
CGAGGCACGATCCGGAGGGGCGGGCGACCGTGTTCGACAGGCTGGCCAAG
CTCAAGATGCCCGACACGCTCATGCCGGTGGGCCGATTGGACTACAACAC
GGAAGGTCTCCTGCTGTTGACTAACGACGGAGACCTAGCCCGCCTGATGG
AGCTGCCGAGCAGTGACATCGTCCGGACCTACTCCGTCCGCGTGTACGGA
AACGGCCGATTGGACTACAACACGGAAGGTCTCCTGCTGTTGACTAACGA
CGGAGACCTAGCCCGCCTGATGGAGCTGCCGAGCAGTGACATCGTCCGGA
CCTACTCCGTCCGCGTGTACGGAAACATAACGGAAGAGAAGCTGAGGGCC
ATGCGGAGCGGCTGCACCATCGACGGAGTCCGGTACAAGGGCATGTTCGT
GAGGGTCGAGGGGGGCGGCGGCAAGGGGCGGGAGGGCCGCAACGCCTGGC
TGACCATCGAGTGCACCGAGGGAAAAATAACGGAAGAGAAGCTGAGGGCC
ATGCGGAGCGGCTGCACCATCGACGGAGTCCGGTACAAGGGCATGTTCGT
GAGGGTCGAGGGGGGCGGCGGCAAGGGGCGGGAGGGCCGCAACGCCTGGC
TGACCATCGAGTGCACCGAGGGAAAAAACCGGCAAATCCGCAAGATCTGC
AAGTACCTGTGCCTGACCGTGAACCGGCTGGCCAGGACCCGCTACGGCCC
CTTCAGCCTCGGCAAGGTCCGGGCCGGCGGGGTAGCCCGCGTGGAAATCC
CGAAGGCGTTTCTGCGGCGCCTGGAGGAGGGCACCGCCGGAGGATCACTG
GGGGCAGGCGGAGGCGGCGGCGGTAGTGGCAGGCGAATGGCAGGGGGGCC
GGGGCCTGGAACAGGGAAGCGCCGGGATGCAGAGGCTGGCGGTATGTCGC
CGCCGCGCCAAGGGGACTCGTCTTTGAGAGGGGAAGGGTTGGACAGTAGG
AGGAGCGGTGATGGTAGAGGAGCGTATGCTGGAGCGTATGCTGGAGGAGG
GGGGAGTGGTGGTTCAAGAAGCGTAGGCGGTACTTGGGGAGGGGCGAGGG
GGAAGAAGGGGGCCCGAATACGAAAGGGGGTGGGGGCTCCCATGTCTAGG
GGAGATAACTCCGCGCGAGGTAGGGCGCAGCAGCAGCGTGCGCGATAGAA
CCGGCAAATCCGCAAGATCTGCAAGTACCTGTGCCTGACCGTGAACCGGC
TGGCCAGGACCCGCTACGGCCCCTTCAGCCTCGGCAAGGTCCGGGCCGGC
GGGGTAGCCCGCGTGGAAATCCCGAAGGCGTTTCTGCGGCGCCTGGAGGA
GGGCACCGCCGGAGGATCACTGGGGGCAGGCGGAGGCGGCGGCGGTAGTG
GCAGGCGAATGGCAGGGGGGCCGGGGCCTGGAACAGGGAAGCGCCGGGAT
GCAGAGGCTGGCGGTATGTCGCCGCCGCGCCAAGGGGACTCGTCTTTGAG
AGGGGAAGGGTTGGACAGTAGGAGGAGCGGTGATGGTAGAGGAGCGTATG
CTGGAGCGTATGCTGGAGGAGGGGGGAGTGGTGGTTCAAGAAGCGTAGGC
GGTACTTGGGGAGGGGCGAGGGGGAAGAAGGGGGCCCGAATACGAAAGGG
GGTGGGGGCTCCCATGTCTAGGGGAGATAACTCCGCGCGAGGTAGGGCGC
AGCAGCAGCGTGCGCGATAG
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