mRNA_L-elsbetiae_contig2012.6050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2012.6050.1
Unique NamemRNA_L-elsbetiae_contig2012.6050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2012.6050.1 vs. uniprot
Match: A0A6H5J9M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.180e-31
Identity = 92/193 (47.67%), Postives = 113/193 (58.55%), Query Frame = 3 
Query:   27 MKRPNTRGFLRRAFLLSLSSGRVGCFVVCGAG-RLRSTAQQLRPLARGADRPL------LQAQHP---HSSSRAASDSVVGFGWHRSL--FQRATSGRTRFLGQ-GVRLSASEAVGEEDGEQQXXXXXXXXXXXXXAGPPVKMTE--ARIEENYTPEEREFVSNFYAEYNAAEEPRPDDDPLAVYSNDYKMYA 560
            MK P T+ FLR   L+SLS+G VGCF+V G G R RSTAQ+ RP  R  DRPL        A  P   H +SR+A    +G G  RS+  ++RA SG  +   + GVRL A+E  GEED E+               G   + +E    +E+NYTPEEREFV NFYAEY AAEEP  D+D LAVY + YKMYA
Sbjct:   12 MKSPTTKCFLRVLLLISLSAGPVGCFIVSGGGGRTRSTAQEFRPN-RCVDRPLQSDYAGTNAAAPMAVHPASRSAG--WMGLGGQRSVSTWRRAGSGVDKACWRNGVRLFAAEGEGEED-EEAFENDDDEAVALREGGDDRQRSEKEVEVEKNYTPEEREFVENFYAEYEAAEEPERDEDELAVYDHAYKMYA 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2012.6050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9M3_9PHAE4.180e-3147.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2012contigL-elsbetiae_contig2012:2846..5444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size561
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2012.6050.1prot_L-elsbetiae_contig2012.6050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2012 2846..5418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.0903554-CDS-L-elsbetiae_contig2012:2845..31031622815833.0903554-CDS-L-elsbetiae_contig2012:2845..3103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 2846..3103 -
1691683133.1479013-CDS-L-elsbetiae_contig2012:2845..31031691683133.1479013-CDS-L-elsbetiae_contig2012:2845..3103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 2846..3103 -
1622815833.1043417-CDS-L-elsbetiae_contig2012:5142..54181622815833.1043417-CDS-L-elsbetiae_contig2012:5142..5418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 5143..5418 -
1691683133.1570077-CDS-L-elsbetiae_contig2012:5142..54181691683133.1570077-CDS-L-elsbetiae_contig2012:5142..5418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 5143..5418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.1173918-UTR-L-elsbetiae_contig2012:5418..54441622815833.1173918-UTR-L-elsbetiae_contig2012:5418..5444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2012 5419..5444 -
1691683133.1662843-UTR-L-elsbetiae_contig2012:5418..54441691683133.1662843-UTR-L-elsbetiae_contig2012:5418..5444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2012 5419..5444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2012.6050.1

>prot_L-elsbetiae_contig2012.6050.1 ID=prot_L-elsbetiae_contig2012.6050.1|Name=mRNA_L-elsbetiae_contig2012.6050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MKRPNTRGFLRRAFLLSLSSGRVGCFVVCGAGRLRSTAQQLRPLARGADR
PLLQAQHPHSSSRAASDSVVGFGWHRSLFQRATSGRTRFLGQGVRLSASE
AVGEEDGEQQSERAAAVAAVAAAAGPPVKMTEARIEENYTPEEREFVSNF
YAEYNAAEEPRPDDDPLAVYSNDYKMYA
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mRNA from alignment at L-elsbetiae_contig2012:2846..5444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2012.6050.1 ID=mRNA_L-elsbetiae_contig2012.6050.1|Name=mRNA_L-elsbetiae_contig2012.6050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2599bp|location=Sequence derived from alignment at L-elsbetiae_contig2012:2846..5444- (Laminarionema elsbetiae ELsaHSoW15)
CACAGCACAGGCAGGGCACAGCCGACATGAAGAGACCGAACACAAGGGGC
TTCCTAAGGAGAGCTTTCCTGTTGTCTCTATCTTCAGGGCGCGTTGGGTG
CTTTGTTGTCTGCGGCGCTGGCCGTCTAAGGAGCACCGCGCAGCAGCTTC
GACCATTAGCCCGCGGCGCCGACCGTCCATTGCTGCAGGCGCAGCACCCA
CACAGCAGCAGTAGAGCAGCCAGCGATTCGGTGGTGGGATTTGGTTGGCA
CAGGAGTCTGTTCCAACGGGCTACGTCCGGGAGGACCCGCTTCTTGGGTC
AGGTGAGGCGAACCTGGTGTATCATGCGTCGCCCTACTGCTGCTACATGT
ACAAGATGGCAGGCGGCCTTGCCTCCCAGAACAACGCGAGGACTGCAGTA
GGCACGTAGGCACGGCGAGGAATAAAGCTTTTCTAAGTGCTCTCTGCTGA
AGTTCCGAGTAGCACCTGGCAGCCTCATTTTTCTCTCTCGTTTGCAAAAG
TCGGTGTTACACGACTGCTGCAGCGCTGGTTGGTATGTAAACCACGCGTA
TTGTGGAGCAGGTGTGTCGCGCCAGCGGGCACGATAGGTGCAACTCGTCG
AGATCGGTATGTATGTCTATAGCAGTCGTGCACATGTAGTCTTCTGTGCA
GCCTGTACTCTGTGGAGGATGGTGCAGCAGGTTGTTGCTGAGCTCTGCAG
TCGGGGCGTTTATGGCTCTCATAATTTTGAGGCTGTTGCTTGTTGTTGTC
TTGCACCATATGTTGAAAACCCCGTTCCGATCTCTCTGTCCAGTACACCT
CTCTATGAGTCCGTAGATACTACAACACTGACGCGGTCGATTCCCTGTGG
TCACAGGATAACTTGCCCTAAATTGATTTGTTCATTTACCGCGGAGTCCC
AATGCTGCTCGCTGTGGGAAAAAAGAAAAACAAGATATAGGCTGAGGGTT
TTGTGGGGGGCAACCTCTAACTAAGGCCTCCGCGTGATTTTGAGCCGATG
ACGAGAGCGCGTCACAGACAGAACCAATGGCTACGAAATTTGGCACGCAG
ACTAAATGTACCGTGAGGACGTAGTACCGACATTGGTGCGTCGAGATACA
CTCAGCAGCAGTCAAGAGGGGCGGTTTCCTCGGGAAAATGGCGTTTGCGC
ACAGCAGCACACACTAGATATCTTCCTGCAAACGGTTTTGGAGGGGAGCA
CGAGTATCTGTTGGAGTAGATTCTTACGGTTGCACAGCACTTTGAACTTC
TCTGCAGCATCCAGTATAGACCGAGTACGCGCAATCGGCGCGAAGCAATA
TTTGAATTTGCAAGATTTTGTGTCTGGGCTCTTTTTTTTTGTACTGTCCG
GAGAGGACATACGGAATGCGGGCAAATTCAAATATTGTTTCACGCCGATT
GCGCGTATAGTGGATGCTGCAGGGGAGTTCAAAGTGCTGTGCAGCCGTAA
GAATCTACTCCAACGGATACTCGAGCTCCCTTCCAAAACCATTGCAGGAA
GATAAGCATGTTGCCTGCGCGCAAATGGCGTGCTCTCGGGAAAATCGTCC
CTCCTGACTGCTGCTGCATGCATTTCGACGCACCACTTTCGGCGCTAGGT
CCTCATGGCACAAGCAGTCTACGTGCCAGATTTCGAATCGATCGAGGGTG
TCTGCGATGAGTTATTGTGTTCCGTTGAAAATCACGCCACCGGCACTTGC
GGTTGCACCGCACACCAGGCGCCAGCCTATTTTTTCAGGCCCGCTGAGTG
TGTCCATTCCGACAGGTTCTTGGTAATTGTGAATCATATGTCACGAACCA
TGGGTCGCTAGACAGATAATACAAAGAGCTGTCGCAGTAATAGTTGTGTT
ATCCAGCGCGTTAAGTTCGTTGGCGGACGGTAAGGCAGCGGAGAGGGTGA
TTTTGCATATCGAAATCCTGGAACCGGCGAGCAACCACTCTCCCGTCGCT
TGTTAATCAAGGGGGCACGCGGGTTGCAATACCCAACACATATGCCGACT
AACTGAGTTACGCGAAATCCCAAGGGGAGGGGGGGGGGAGGGGATACTAA
ATCCTATATGTGTGTGTGTTTTCGGGGGACTGCAGCCTAGATTTCGAAGG
GGGTGCCGCGTGGGGGTTTATCCCCCATGGGTCTCTCCCATTCCAATTCA
CATAAAAGAAAACAAGCTGGATGAATCCCAAAAGCAAACCGAAACGGGGG
GGAGAAGGGGCATAGGTGTTGGTATTGCAACCTGCATGCCCCCCTGTGTC
AATTCACCACGAAGTCCCGTCTCTAACGTTGGAAATGTGATTTCTTTGAT
ATTCCTGGTTTCTTTGTGGTTACATAAAAAAAAAAAAGCAGGGAGTTCGA
TTATCTGCGTCGGAGGCGGTGGGAGAAGAAGATGGAGAGCAGCAGAGCGA
GAGGGCGGCGGCGGTGGCGGCCGTAGCGGCGGCGGCAGGGCCGCCGGTAA
AGATGACGGAAGCGAGGATTGAGGAGAACTACACGCCCGAGGAGCGAGAG
TTCGTCAGCAACTTCTACGCCGAGTACAACGCCGCCGAAGAACCGAGGCC
CGACGACGACCCCCTCGCGGTCTACTCGAACGACTACAAGATGTACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2012:2846..5444-

>mRNA_L-elsbetiae_contig2012.6050.1 ID=mRNA_L-elsbetiae_contig2012.6050.1|Name=mRNA_L-elsbetiae_contig2012.6050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig2012:2846..5444- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGACCGAACACAAGGGGCTTCCTAAGGAGAGCTTTCCTGTTGTC
TCTATCTTCAGGGCGCGTTGGGTGCTTTGTTGTCTGCGGCGCTGGCCGTC
TAAGGAGCACCGCGCAGCAGCTTCGACCATTAGCCCGCGGCGCCGACCGT
CCATTGCTGCAGGCGCAGCACCCACACAGCAGCAGTAGAGCAGCCAGCGA
TTCGGTGGTGGGATTTGGTTGGCACAGGAGTCTGTTCCAACGGGCTACGT
CCGGGAGGACCCGCTTCTTGGGTCAGATGAAGAGACCGAACACAAGGGGC
TTCCTAAGGAGAGCTTTCCTGTTGTCTCTATCTTCAGGGCGCGTTGGGTG
CTTTGTTGTCTGCGGCGCTGGCCGTCTAAGGAGCACCGCGCAGCAGCTTC
GACCATTAGCCCGCGGCGCCGACCGTCCATTGCTGCAGGCGCAGCACCCA
CACAGCAGCAGTAGAGCAGCCAGCGATTCGGTGGTGGGATTTGGTTGGCA
CAGGAGTCTGTTCCAACGGGCTACGTCCGGGAGGACCCGCTTCTTGGGTC
AGGGAGTTCGATTATCTGCGTCGGAGGCGGTGGGAGAAGAAGATGGAGAG
CAGCAGAGCGAGAGGGCGGCGGCGGTGGCGGCCGTAGCGGCGGCGGCAGG
GCCGCCGGTAAAGATGACGGAAGCGAGGATTGAGGAGAACTACACGCCCG
AGGAGCGAGAGTTCGTCAGCAACTTCTACGCCGAGTACAACGCCGCCGAA
GAACCGAGGCCCGACGACGACCCCCTCGCGGTCTACTCGAACGACTACAA
GATGTACGCCGGAGTTCGATTATCTGCGTCGGAGGCGGTGGGAGAAGAAG
ATGGAGAGCAGCAGAGCGAGAGGGCGGCGGCGGTGGCGGCCGTAGCGGCG
GCGGCAGGGCCGCCGGTAAAGATGACGGAAGCGAGGATTGAGGAGAACTA
CACGCCCGAGGAGCGAGAGTTCGTCAGCAACTTCTACGCCGAGTACAACG
CCGCCGAAGAACCGAGGCCCGACGACGACCCCCTCGCGGTCTACTCGAAC
GACTACAAGATGTACGCC
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