mRNA_L-elsbetiae_contig20104.6046.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20104.6046.1
Unique NamemRNA_L-elsbetiae_contig20104.6046.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20104.6046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20104contigL-elsbetiae_contig20104:1894..2545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size652
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.694722-CDS-L-elsbetiae_contig20104:1893..24031622815832.694722-CDS-L-elsbetiae_contig20104:1893..2403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 1894..2403 +
1691683132.92816-CDS-L-elsbetiae_contig20104:1893..24031691683132.92816-CDS-L-elsbetiae_contig20104:1893..2403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 1894..2403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.7078722-UTR-L-elsbetiae_contig20104:2403..25451622815832.7078722-UTR-L-elsbetiae_contig20104:2403..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20104 2404..2545 +
1691683132.93893-UTR-L-elsbetiae_contig20104:2403..25451691683132.93893-UTR-L-elsbetiae_contig20104:2403..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20104 2404..2545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20104.6046.1prot_L-elsbetiae_contig20104.6046.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20104 1894..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20104.6046.1

>prot_L-elsbetiae_contig20104.6046.1 ID=prot_L-elsbetiae_contig20104.6046.1|Name=mRNA_L-elsbetiae_contig20104.6046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
NGPTSRSSGGYFPHRTRERGIRWILHLQNVTPCWLRRTGKETSAQARKHL
INCGLERGWSVVFSPFSYCRTCRPSPFAAAAVTGFTPTRQDHNCHSPTST
TIKLVPASACNCRTSVDRPCKRNRLRFTSPRPPQPPRITENIRMLPLRSP
QKECYVFKHDLSATSVFYY*
back to top

mRNA from alignment at L-elsbetiae_contig20104:1894..2545+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20104.6046.1 ID=mRNA_L-elsbetiae_contig20104.6046.1|Name=mRNA_L-elsbetiae_contig20104.6046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=652bp|location=Sequence derived from alignment at L-elsbetiae_contig20104:1894..2545+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCCCGACTAGCAGGTCTTCCGGAGGATATTTTCCTCACAGAACGCG
AGAAAGGGGTATACGGTGGATATTGCACCTACAAAACGTTACCCCGTGTT
GGTTACGAAGGACAGGGAAGGAAACCAGCGCACAAGCGAGAAAACACCTA
ATTAATTGCGGTCTTGAGAGAGGGTGGTCAGTGGTCTTTTCCCCTTTTTC
GTACTGCCGCACATGCCGACCATCACCGTTCGCTGCTGCTGCCGTCACGG
GCTTCACACCAACACGACAAGACCACAACTGCCACTCGCCGACCTCAACA
ACGATCAAGCTCGTTCCGGCGTCCGCCTGCAACTGCCGTACATCTGTAGA
TAGACCATGCAAACGAAACCGACTCCGCTTCACCTCGCCCCGTCCACCAC
AGCCGCCACGCATTACGGAAAACATACGAATGCTTCCCCTCCGCTCTCCG
CAGAAAGAATGCTATGTATTCAAGCACGATCTATCCGCAACAAGCGTTTT
CTACTACTAAATGCTGTTTCATCGACATCCATTCTTCCAACTTCAGGGAG
CTATGTACGACTGCGGGCCAACCTGCCGTCGAAATCTTCATCGTTCCGCA
TGATGCCCACAACTAGATAACTTTCGTCGTCGAAACCGTGGTGGTGCCGG
CC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20104:1894..2545+

>mRNA_L-elsbetiae_contig20104.6046.1 ID=mRNA_L-elsbetiae_contig20104.6046.1|Name=mRNA_L-elsbetiae_contig20104.6046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig20104:1894..2545+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCCCGACTAGCAGGTCTTCCGGAGGATATTTTCCTCACAGAACGCG
AGAAAGGGGTATACGGTGGATATTGCACCTACAAAACGTTACCCCGTGTT
GGTTACGAAGGACAGGGAAGGAAACCAGCGCACAAGCGAGAAAACACCTA
ATTAATTGCGGTCTTGAGAGAGGGTGGTCAGTGGTCTTTTCCCCTTTTTC
GTACTGCCGCACATGCCGACCATCACCGTTCGCTGCTGCTGCCGTCACGG
GCTTCACACCAACACGACAAGACCACAACTGCCACTCGCCGACCTCAACA
ACGATCAAGCTCGTTCCGGCGTCCGCCTGCAACTGCCGTACATCTGTAGA
TAGACCATGCAAACGAAACCGACTCCGCTTCACCTCGCCCCGTCCACCAC
AGCCGCCACGCATTACGGAAAACATACGAATGCTTCCCCTCCGCTCTCCG
CAGAAAGAATGCTATGTATTCAAGCACGATCTATCCGCAACAAGCGTTTT
CTACTACTAAAACGGCCCGACTAGCAGGTCTTCCGGAGGATATTTTCCTC
ACAGAACGCGAGAAAGGGGTATACGGTGGATATTGCACCTACAAAACGTT
ACCCCGTGTTGGTTACGAAGGACAGGGAAGGAAACCAGCGCACAAGCGAG
AAAACACCTAATTAATTGCGGTCTTGAGAGAGGGTGGTCAGTGGTCTTTT
CCCCTTTTTCGTACTGCCGCACATGCCGACCATCACCGTTCGCTGCTGCT
GCCGTCACGGGCTTCACACCAACACGACAAGACCACAACTGCCACTCGCC
GACCTCAACAACGATCAAGCTCGTTCCGGCGTCCGCCTGCAACTGCCGTA
CATCTGTAGATAGACCATGCAAACGAAACCGACTCCGCTTCACCTCGCCC
CGTCCACCACAGCCGCCACGCATTACGGAAAACATACGAATGCTTCCCCT
CCGCTCTCCGCAGAAAGAATGCTATGTATTCAAGCACGATCTATCCGCAA
CAAGCGTTTTCTACTACTAA
back to top