Homology
BLAST of mRNA_L-elsbetiae_contig201.6035.1 vs. uniprot
Match:
D8LKP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP2_ECTSI)
HSP 1 Score: 113 bits (283), Expect = 4.210e-28
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = -1
Query: 67 IAFQPYYCGVEAPDTSAGGGESRSTKYLRFGHSMTETFECDLRSLLGKDVFFYDPYIVDE 246
++ QPYYCGV APDTSAGGG+SRS+KYL+FGHSMTETFECDL+SLLG++ FFYDPYIVDE
Sbjct: 240 MSTQPYYCGVGAPDTSAGGGQSRSSKYLKFGHSMTETFECDLKSLLGEEAFFYDPYIVDE 299
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig201.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.21e-28 / Id = 81.67 Sequence D8LKP2_ECTSI
Match Name E-value Identity Description
D8LKP2_ECTSI 4.210e-28 81.67 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 316
Cds size 315
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815831.97411-CDS-L-elsbetiae_contig201:12518..12833 1622815831.97411-CDS-L-elsbetiae_contig201:12518..12833 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig201 12519..12833 +
1691683132.439466-CDS-L-elsbetiae_contig201:12518..12833 1691683132.439466-CDS-L-elsbetiae_contig201:12518..12833 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig201 12519..12833 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig201.6035.1
>prot_L-elsbetiae_contig201.6035.1 ID=prot_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RECVSRLFNGGENRTKAFDKYYLVDDVRVVEEDILSEERPQVALKRFRHA VPEPEIFRTAAFAPSGRRVWRLDPAVVRLESDARGCGQTTTWSRFCCCRG QESEM back to top mRNA from alignment at L-elsbetiae_contig201:12519..12834+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig201.6035.1 ID=mRNA_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig201:12519..12834+ (Laminarionema elsbetiae ELsaHSoW15)CGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGAAAACAGAACGAAAGC
ATTTGACAAGTATTACCTCGTCGACGATGTAAGGGTCGTAGAAGAAGACA
TCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAACGTTTCCGTCATGCT
GTGCCCGAACCTGAGATATTTCGTACTGCGGCTTTCGCCCCCTCCGGCCG
ACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGCTGGAAAGCGATGCAC
GGGGATGTGGACAAACGACAACATGGTCGAGGTTCTGCTGCTGTCGTGGT
CAGGAATCAGAGATG C back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig201:12519..12834+
>mRNA_L-elsbetiae_contig201.6035.1 ID=mRNA_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig201:12519..12834+ (Laminarionema elsbetiae ELsaHSoW15) CGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGAAAACAGAACGAAAGC ATTTGACAAGTATTACCTCGTCGACGATGTAAGGGTCGTAGAAGAAGACA TCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAACGTTTCCGTCATGCT GTGCCCGAACCTGAGATATTTCGTACTGCGGCTTTCGCCCCCTCCGGCCG ACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGCTGGAAAGCGATGCAC GGGGATGTGGACAAACGACAACATGGTCGAGGTTCTGCTGCTGTCGTGGT CAGGAATCAGAGATGCGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGA AAACAGAACGAAAGCATTTGACAAGTATTACCTCGTCGACGATGTAAGGG TCGTAGAAGAAGACATCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAA CGTTTCCGTCATGCTGTGCCCGAACCTGAGATATTTCGTACTGCGGCTTT CGCCCCCTCCGGCCGACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGC TGGAAAGCGATGCACGGGGATGTGGACAAACGACAACATGGTCGAGGTTC TGCTGCTGTCGTGGTCAGGAATCAGAGATG back to top