mRNA_L-elsbetiae_contig20055.6028.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20055.6028.1
Unique NamemRNA_L-elsbetiae_contig20055.6028.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A0A2W1B3_BEABA (tRNA (Guanine-N(1)-)-methyltransferase n=1 Tax=Beauveria bassiana D1-5 TaxID=1245745 RepID=A0A0A2W1B3_BEABA)

HSP 1 Score: 492 bits (1267), Expect = 5.000e-170
Identity = 254/383 (66.32%), Postives = 304/383 (79.37%), Query Frame = 1 
Query:    4 KVVTTQGYDLGVVKEVFNTGANDVVHVKANVGDAFGQKERLIPFVFDDVVQEVDREAKVIKVDWDPGF*VTPEKWF---GVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEV---LDGQSV-PEVLLSAQLKSDVPGFGPGDTVVVKVRVTEGDKERLQAYEGVVIAKRNRGLHSSFTVRKISSGEGVERVFQTHSPAISSIEVKRRGAVRRAKLYYLRERSGKSARIKEKLN 1131
            +VVTTQGY LG V ++  TG+NDV+ +KAN+ DAFG KERL+PF+   V+++VD   + I+ + D         W    G+VSLFP+MF   T  GV GRAVK+G LS+ +++PRDFT+DRHRTVDDRPYGGGPGMLMMV PL +AI AAK   GE + VIYLSPQG+ LDQAGV  LA  ++ IL+CGRYEGIDERVI++ +DEE SIGDYVLSGGELPAM L+D+V+R +PGVLGH+ASA EDSF +GLLDCPHYTRPE+    DG+ V P+ L S  +K DVP F PGD+V VKV V EG K+RLQA+EGVVIA RNRGLHS+FTVRKIS+GEGVERVFQTHSP I SI VKRRGAVR+AKLYYLRER+GKSARIKE+LN
Sbjct:  115 QVVTTQGYQLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATQTIEHNGD---------WLVFIGIVSLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTYDRHRTVDDRPYGGGPGMLMMVNPLREAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELAANEKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPHYTRPELELQQDGKRVNPDELTS--MKQDVPSFRPGDSVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSITVKRRGAVRKAKLYYLRERTGKSARIKERLN 486
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: K0D223_ALTMS (tRNA (guanine-N(1)-)-methyltransferase n=59 Tax=Alteromonadaceae TaxID=72275 RepID=K0D223_ALTMS)

HSP 1 Score: 400 bits (1028), Expect = 2.830e-137
Identity = 194/202 (96.04%), Postives = 197/202 (97.52%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +TPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSG LSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGE S VIYLSPQGKPLDQAGVQRLA IDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPE+LDGQ VP+VLLS
Sbjct:    1 MTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGTLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGEKSKVIYLSPQGKPLDQAGVQRLANIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEILDGQKVPDVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A346NK73_9ALTE (tRNA (guanine-N(1)-)-methyltransferase n=4 Tax=Alteromonas/Salinimonas group TaxID=2903219 RepID=A0A346NK73_9ALTE)

HSP 1 Score: 373 bits (958), Expect = 1.210e-126
Identity = 181/202 (89.60%), Postives = 190/202 (94.06%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +T +KWFG+VSLFP+MFAPFTQQGVIGRAVKSG L+V+TFNPR +THDRHRTVDDRPYGGGPGMLMMVKPLTDAI AAK+ GGENS VIYLSPQGK LDQAGV RLA  DR ILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDG+SVP VLLS
Sbjct:    1 MTADKWFGIVSLFPEMFAPFTQQGVIGRAVKSGTLAVETFNPRIYTHDRHRTVDDRPYGGGPGMLMMVKPLTDAISAAKQAGGENSKVIYLSPQGKKLDQAGVARLANNDRMILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGRSVPSVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A3D8M648_9ALTE (tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Alteromonas aestuariivivens TaxID=1938339 RepID=A0A3D8M648_9ALTE)

HSP 1 Score: 371 bits (953), Expect = 6.970e-126
Identity = 179/202 (88.61%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +T EKWFG+VSLFPDMFAPFTQQGV+GRAVKSG LSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAI AAK+ GGEN+ VIYLSPQGKPLDQAGV+ LA  DRTILICGRYEGIDERVIES VDEE SIGDYVLSGGELPAMVLMDAVARLVPGVLGH ASA EDSF DGLLDCPHYTRPE+LDG++VP VLLS
Sbjct:    1 MTAEKWFGIVSLFPDMFAPFTQQGVVGRAVKSGLLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAISAAKQAGGENTRVIYLSPQGKPLDQAGVKHLASHDRTILICGRYEGIDERVIESQVDEEWSIGDYVLSGGELPAMVLMDAVARLVPGVLGHSASAEEDSFADGLLDCPHYTRPEILDGRAVPPVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A6M4M9K2_9ALTE (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Alteromonas pelagimontana TaxID=1858656 RepID=A0A6M4M9K2_9ALTE)

HSP 1 Score: 369 bits (946), Expect = 8.060e-125
Identity = 177/199 (88.94%), Postives = 189/199 (94.97%), Query Frame = 1 
Query:  220 EKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            EKWFG+VSLFPDMFAPFTQQGV+GRA+KSG L+VDTFNPR+FTHDRHRTVDDRPYGGGPGMLMMVKPLTDAI AAK VGGE S VIYLSPQGKPLDQAGV++LA  DRTILICGRYEGIDERVI++ VDEE SIGDYVLSGGELPAMVLMDAVARLVPGVLGH+ASAVEDSFTDGLLDCPHYTRPEVLDG++VP VLLS
Sbjct:    4 EKWFGIVSLFPDMFAPFTQQGVVGRAIKSGILNVDTFNPREFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAISAAKTVGGEQSKVIYLSPQGKPLDQAGVKKLAQYDRTILICGRYEGIDERVIDNLVDEEWSIGDYVLSGGELPAMVLMDAVARLVPGVLGHQASAVEDSFTDGLLDCPHYTRPEVLDGEAVPPVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A5B7YFD1_9ALTE (tRNA (guanine-N(1)-)-methyltransferase n=5 Tax=Salinimonas TaxID=288793 RepID=A0A5B7YFD1_9ALTE)

HSP 1 Score: 365 bits (936), Expect = 2.660e-123
Identity = 174/202 (86.14%), Postives = 187/202 (92.57%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +T EKWFG+VS+FP+MF PFTQQGVIGRAVKSG LSVD FNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAI AA+  GGENS VIYLSPQGK LDQ GV+RLA  DRTIL+CGRYEGIDERVIE  VDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGH+ASA+EDSF+DGLLDCPHYTRPE+LDG++VP VLLS
Sbjct:    1 MTAEKWFGIVSIFPEMFGPFTQQGVIGRAVKSGVLSVDIFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAISAARAAGGENSKVIYLSPQGKKLDQTGVKRLAESDRTILLCGRYEGIDERVIEDQVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHQASAIEDSFSDGLLDCPHYTRPELLDGKAVPSVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: UPI00167B53A2 (tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1 Tax=Alteromonas halophila TaxID=516698 RepID=UPI00167B53A2)

HSP 1 Score: 365 bits (936), Expect = 2.660e-123
Identity = 173/202 (85.64%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +TP KWFGVV+LFP+MFAPFTQQGV GRAVKSGK+++DTFNPRD T DRHRTVDDRPYGGGPGMLMMV+PL  AI+AA++ GGEN+ V+YLSPQG PLDQ+GVQRLA  DRTIL+CGRYEGIDERVIE HVDEE+SIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQ+VP VLLS
Sbjct:    1 MTPAKWFGVVTLFPEMFAPFTQQGVTGRAVKSGKVALDTFNPRDHTFDRHRTVDDRPYGGGPGMLMMVEPLEGAIKAAREAGGENAKVVYLSPQGTPLDQSGVQRLAQSDRTILLCGRYEGIDERVIERHVDEEISIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQAVPSVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A1M5RAZ8_9ALTE (tRNA (guanine-N(1)-)-methyltransferase n=14 Tax=Alteromonadaceae TaxID=72275 RepID=A0A1M5RAZ8_9ALTE)

HSP 1 Score: 358 bits (920), Expect = 7.120e-121
Identity = 170/202 (84.16%), Postives = 184/202 (91.09%), Query Frame = 1 
Query:  211 VTPEKWFGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            +T  KWFGV+SLFPDMF PFTQQGVIGRAVK G+L+++ FNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAI AAK+ GGENS VIYLSPQGKPLDQAGV+ LA  D  IL+CGRYEG+DERVIESHVDEE SIGDYVLSGGELPAMV+MDA+ARLVPGVLGH  SAVEDSFT GLLDCPHYTRPEVLDG++VP VLLS
Sbjct:    1 MTAAKWFGVISLFPDMFGPFTQQGVIGRAVKKGQLTIEHFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAITAAKQAGGENSKVIYLSPQGKPLDQAGVKSLASHDNLILLCGRYEGVDERVIESHVDEEWSIGDYVLSGGELPAMVMMDAIARLVPGVLGHSDSAVEDSFTHGLLDCPHYTRPEVLDGKAVPPVLLS 202
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: UPI001C6593B5 (tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C6593B5)

HSP 1 Score: 357 bits (915), Expect = 2.410e-120
Identity = 173/187 (92.51%), Postives = 181/187 (96.79%), Query Frame = 1 
Query:  256 MFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLS 816
            MFAPFTQQGV GRAVK+G L VDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAI AAK+VGGENS VIYLSPQGKPLDQAGV+RL+ IDRTILICGRYEGIDERVI++HVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVL+GQ+VPEVLLS
Sbjct:    1 MFAPFTQQGVTGRAVKAGLLGVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAISAAKQVGGENSKVIYLSPQGKPLDQAGVKRLSEIDRTILICGRYEGIDERVIDAHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVLEGQAVPEVLLS 187
[Close]
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Match: A0A8B7N6U3_HYAAZ (tRNA (Guanine-N(1)-)-methyltransferase-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7N6U3_HYAAZ)

HSP 1 Score: 344 bits (882), Expect = 3.750e-114
Identity = 180/314 (57.32%), Postives = 228/314 (72.61%), Query Frame = 1 
Query:  229 FGVVSLFPDMFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGMLMMVKPLTDAIQAAKKVGGENSS---VIYLSPQGKPLDQAGVQRLAGIDRTILICGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLGHKASAVEDSFTDGLLDCPHYTRPEVL----DGQSVPEVLLS-------AQLKSDVPGFGPGDTVVVKVRVTEGDKERLQAYEGVVIAKRNRGLHSSFTVRKISSGEGVERVFQTHSPAISSIEVKRRGAVRRAKLYYLRERSGKSARIKEKL 1128
            F V++LFP++F PF   GV  RA +SG++ +  +  RDF  D +R VDDRP+GGGPGM+M+ +PL  A+ A ++   +  +   VI+ SP G+P+ QA ++ LA      L+CGRYEGID+RV++  VD E+S+GD+VLSGGELPA+ L+D +ARL  GVL    S  +DSF DGLLDCPHY+RPEVL      Q+ P  L+        A+L   +P F PGDTV+V V V EG ++R+QAYEGVVIAKRNRGL+SSF VRKISSGEGVER FQ +SP I+SIEVKRRG VRRAKLYYLR+RSGKSARIKEKL
Sbjct:    3 FDVITLFPELFTPFQTVGVTRRAFESGQVELRFWPLRDFAADTYRRVDDRPFGGGPGMVMLAEPLLKALAAVRQARAQVQAAGPVIHFSPVGQPITQALLRELAQGPGATLLCGRYEGIDQRVLDREVDLELSLGDFVLSGGELPALALLDGIARLQAGVLSDARSHEQDSFEDGLLDCPHYSRPEVLALPEGDQANPVDLIQTLEQEEIARLNKTIPAFAPGDTVIVSVNVVEGTRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQRSGKSARIKEKL 316
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20055.6028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A2W1B3_BEABA5.000e-17066.32tRNA (Guanine-N(1)-)-methyltransferase n=1 Tax=Bea... [more]
K0D223_ALTMS2.830e-13796.04tRNA (guanine-N(1)-)-methyltransferase n=59 Tax=Al... [more]
A0A346NK73_9ALTE1.210e-12689.60tRNA (guanine-N(1)-)-methyltransferase n=4 Tax=Alt... [more]
A0A3D8M648_9ALTE6.970e-12688.61tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Alt... [more]
A0A6M4M9K2_9ALTE8.060e-12588.94tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Alt... [more]
A0A5B7YFD1_9ALTE2.660e-12386.14tRNA (guanine-N(1)-)-methyltransferase n=5 Tax=Sal... [more]
UPI00167B53A22.660e-12385.64tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1... [more]
A0A1M5RAZ8_9ALTE7.120e-12184.16tRNA (guanine-N(1)-)-methyltransferase n=14 Tax=Al... [more]
UPI001C6593B52.410e-12092.51tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1... [more]
A0A8B7N6U3_HYAAZ3.750e-11457.32tRNA (Guanine-N(1)-)-methyltransferase-like n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20055contigL-elsbetiae_contig20055:2..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score376.3
Seed ortholog evalue1.3e-101
Seed eggNOG ortholog715451.ambt_12235
Preferred nametrmD
KEGG rclassRC00002,RC00003,RC00334,RC01440
KEGG koko:K00554,ko:K01770
KEGG ReactionR00597,R05637
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.Belongs to the RNA methyltransferase TrmD family
EggNOG OGs1MUN1@1224,1RMWC@1236,464K1@72275,COG0336@1,COG0336@2
EC2.1.1.228,4.6.1.12
COG Functional cat.J
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Exons2
Model size1134
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20055.6028.1prot_L-elsbetiae_contig20055.6028.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20055 257..1351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.0718026-UTR-L-elsbetiae_contig20055:1..2561622815831.0718026-UTR-L-elsbetiae_contig20055:1..256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20055 2..256 +
1691683131.7615771-UTR-L-elsbetiae_contig20055:1..2561691683131.7615771-UTR-L-elsbetiae_contig20055:1..256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20055 2..256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.0858827-CDS-L-elsbetiae_contig20055:256..8181622815831.0858827-CDS-L-elsbetiae_contig20055:256..818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20055 257..818 +
1691683131.7879264-CDS-L-elsbetiae_contig20055:256..8181691683131.7879264-CDS-L-elsbetiae_contig20055:256..818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20055 257..818 +
1622815831.0971422-CDS-L-elsbetiae_contig20055:1034..13511622815831.0971422-CDS-L-elsbetiae_contig20055:1034..1351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20055 1035..1351 +
1691683131.803728-CDS-L-elsbetiae_contig20055:1034..13511691683131.803728-CDS-L-elsbetiae_contig20055:1034..1351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20055 1035..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20055.6028.1

>prot_L-elsbetiae_contig20055.6028.1 ID=prot_L-elsbetiae_contig20055.6028.1|Name=mRNA_L-elsbetiae_contig20055.6028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
MFAPFTQQGVIGRAVKSGKLSVDTFNPRDFTHDRHRTVDDRPYGGGPGML
MMVKPLTDAIQAAKKVGGENSSVIYLSPQGKPLDQAGVQRLAGIDRTILI
CGRYEGIDERVIESHVDEEVSIGDYVLSGGELPAMVLMDAVARLVPGVLG
HKASAVEDSFTDGLLDCPHYTRPEVLDGQSVPEVLLSAQLKSDVPGFGPG
DTVVVKVRVTEGDKERLQAYEGVVIAKRNRGLHSSFTVRKISSGEGVERV
FQTHSPAISSIEVKRRGAVRRAKLYYLRERSGKSARIKEKLN*
back to top

mRNA from alignment at L-elsbetiae_contig20055:2..1351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20055.6028.1 ID=mRNA_L-elsbetiae_contig20055.6028.1|Name=mRNA_L-elsbetiae_contig20055.6028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig20055:2..1351+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGTGGTAACTACGCAAGGTTACGACTTAGGTGTGGTGAAAGAAGT
ATTTAATACAGGTGCCAATGACGTGGTTCACGTTAAAGCTAATGTAGGCG
ATGCTTTTGGTCAAAAAGAAAGATTAATACCTTTTGTGTTCGACGACGTT
GTACAAGAGGTTGATCGGGAAGCGAAGGTCATTAAAGTTGACTGGGACCC
GGGGTTTTAAGTGACACCGGAAAAATGGTTCGGGGTGGTTAGCCTGTTTC
CAGATATGTTCGCGCCATTTACCCAACAGGGTGTAATCGGCAGGGCTGTT
AAGTCTGGAAAATTATCGGTTGATACCTTTAACCCCCGCGACTTTACCCA
TGACCGCCATCGCACAGTTGACGATCGCCCCTATGGTGGCGGACCCGGCA
TGCTGATGATGGTTAAACCGCTTACCGACGCAATACAAGCTGCCAAGAAA
GTTGGTGGCGAAAACAGTAGCGTGATCTACTTATCACCCCAAGGGAAACC
CCTTGACCAAGCAGGCGTTCAACGTCTTGCTGGAATTGACCGTACGATTT
TAATCTGTGGTCGATATGAAGGAATTGATGAGCGCGTAATCGAAAGCCAT
GTAGATGAAGAAGTCTCCATTGGTGATTACGTTCTAAGTGGCGGTGAACT
GCCGGCAATGGTCTTAATGGACGCAGTTGCTAGATTAGTTCCCGGCGTGT
TGGGGCATAAAGCTTCAGCAGTTGAAGATTCCTTTACCGATGGTCTTCTG
GATTGTCCGCATTATACGCGGCCAGAAGTACTAGATGGTCAATCGGTGCC
TGAAGTGTTGTTAAGTGGTGATCATGAAAAAATTAGGCAGTGGCGATTAA
TGCAGTCTTTGGGTAGAACCTTACTGCGTCGCCCTGATTTGTTAAATCAC
CTAGCTCTGACTGAGGAGCAGCAGCGGTTATTGGAAATATTCCAAACGCA
GTTGCAGCGAGATGACAGTTAACTAGGACGAGAGGATATGATGAGCAAAG
TCAGTCAAGATATCATCAAGAAAATTGAGCAAGCACAGCTTAAATCTGAT
GTTCCAGGGTTCGGCCCGGGTGACACAGTAGTTGTTAAAGTTCGCGTTAC
CGAAGGTGACAAAGAGCGTCTTCAGGCTTATGAAGGTGTTGTTATCGCTA
AGCGTAACCGTGGTCTGCACTCGTCTTTTACCGTACGTAAGATTTCTAGC
GGCGAAGGCGTTGAGCGTGTGTTCCAAACACACAGCCCGGCTATCTCTTC
AATTGAAGTTAAACGCCGCGGTGCGGTTCGTCGTGCTAAGCTTTACTATC
TTCGTGAACGTTCAGGTAAATCTGCACGTATCAAAGAAAAGCTTAACTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20055:2..1351+

>mRNA_L-elsbetiae_contig20055.6028.1 ID=mRNA_L-elsbetiae_contig20055.6028.1|Name=mRNA_L-elsbetiae_contig20055.6028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig20055:2..1351+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCGCCATTTACCCAACAGGGTGTAATCGGCAGGGCTGTTAAGTC
TGGAAAATTATCGGTTGATACCTTTAACCCCCGCGACTTTACCCATGACC
GCCATCGCACAGTTGACGATCGCCCCTATGGTGGCGGACCCGGCATGCTG
ATGATGGTTAAACCGCTTACCGACGCAATACAAGCTGCCAAGAAAGTTGG
TGGCGAAAACAGTAGCGTGATCTACTTATCACCCCAAGGGAAACCCCTTG
ACCAAGCAGGCGTTCAACGTCTTGCTGGAATTGACCGTACGATTTTAATC
TGTGGTCGATATGAAGGAATTGATGAGCGCGTAATCGAAAGCCATGTAGA
TGAAGAAGTCTCCATTGGTGATTACGTTCTAAGTGGCGGTGAACTGCCGG
CAATGGTCTTAATGGACGCAGTTGCTAGATTAGTTCCCGGCGTGTTGGGG
CATAAAGCTTCAGCAGTTGAAGATTCCTTTACCGATGGTCTTCTGGATTG
TCCGCATTATACGCGGCCAGAAGTACTAGATGGTCAATCGGTGCCTGAAG
TGTTGTTAAGTGATGTTCGCGCCATTTACCCAACAGGGTGTAATCGGCAG
GGCTGTTAAGTCTGGAAAATTATCGGTTGATACCTTTAACCCCCGCGACT
TTACCCATGACCGCCATCGCACAGTTGACGATCGCCCCTATGGTGGCGGA
CCCGGCATGCTGATGATGGTTAAACCGCTTACCGACGCAATACAAGCTGC
CAAGAAAGTTGGTGGCGAAAACAGTAGCGTGATCTACTTATCACCCCAAG
GGAAACCCCTTGACCAAGCAGGCGTTCAACGTCTTGCTGGAATTGACCGT
ACGATTTTAATCTGTGGTCGATATGAAGGAATTGATGAGCGCGTAATCGA
AAGCCATGTAGATGAAGAAGTCTCCATTGGTGATTACGTTCTAAGTGGCG
GTGAACTGCCGGCAATGGTCTTAATGGACGCAGTTGCTAGATTAGTTCCC
GGCGTGTTGGGGCATAAAGCTTCAGCAGTTGAAGATTCCTTTACCGATGG
TCTTCTGGATTGTCCGCATTATACGCGGCCAGAAGTACTAGATGGTCAAT
CGGTGCCTGAAGTGTTGTTAAGTGCACAGCTTAAATCTGATGTTCCAGGG
TTCGGCCCGGGTGACACAGTAGTTGTTAAAGTTCGCGTTACCGAAGGTGA
CAAAGAGCGTCTTCAGGCTTATGAAGGTGTTGTTATCGCTAAGCGTAACC
GTGGTCTGCACTCGTCTTTTACCGTACGTAAGATTTCTAGCGGCGAAGGC
GTTGAGCGTGTGTTCCAAACACACAGCCCGGCTATCTCTTCAATTGAAGT
TAAACGCCGCGGTGCGGTTCGTCGTGCTAAGCTTTACTATCTTCGTGAAC
GTTCAGGTAAATCTGCACGTATCAAAGAAAAGCTTAACTAACACAGCTTA
AATCTGATGTTCCAGGGTTCGGCCCGGGTGACACAGTAGTTGTTAAAGTT
CGCGTTACCGAAGGTGACAAAGAGCGTCTTCAGGCTTATGAAGGTGTTGT
TATCGCTAAGCGTAACCGTGGTCTGCACTCGTCTTTTACCGTACGTAAGA
TTTCTAGCGGCGAAGGCGTTGAGCGTGTGTTCCAAACACACAGCCCGGCT
ATCTCTTCAATTGAAGTTAAACGCCGCGGTGCGGTTCGTCGTGCTAAGCT
TTACTATCTTCGTGAACGTTCAGGTAAATCTGCACGTATCAAAGAAAAGC
TTAACTAA
back to top