mRNA_L-elsbetiae_contig20039.6023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20039.6023.1
Unique NamemRNA_L-elsbetiae_contig20039.6023.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: D7G3R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R1_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 8.110e-58
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ERLTR+KHDGGDTGELV HAL S+GA LEDVRLVVSNNHH RVAPFE+RVPWAVAQG  P SYASEENL+PGAAHAELSHHLAHAWSAAAL+PFDSGLI+VMDGMGES+GAM
Sbjct:   84 ERLTRAKHDGGDTGELVSHALRSVGASLEDVRLVVSNNHHHRVAPFEERVPWAVAQGTYPASYASEENLIPGAAHAELSHHLAHAWSAAALSPFDSGLIVVMDGMGESHGAM 195          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A7S2XZK2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK2_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.990e-40
Identity = 76/119 (63.87%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEK--RVPWAVAQGACPESYASEENLLPGA-----AHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ER+TR KHDGGDTGELV HAL+SIGA+ EDV +VV NNHH  V P EK  R+ WA+  G  P SYAS  NLL G       H E+SHHLAHAWSA    PF SGL++VMDGMGESY AM
Sbjct:   55 ERITRKKHDGGDTGELVEHALESIGAQKEDVGVVVCNNHHHPVLPLEKTGRLHWAIDLGHLPPSYASPHNLLAGGNNWSVVHHEISHHLAHAWSALTQVPFASGLVVVMDGMGESYQAM 173          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A7S1K9F6_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9F6_9ALVE)

HSP 1 Score: 137 bits (346), Expect = 1.720e-39
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESY 327
            ERL+R KHDGG+  +LV  AL S+ A L+DV +VV +NHH R+APFE R+PWAV+QG  P SY    N+  G    E+SHHLAHAWS    APFD GL++VMDGMGESY
Sbjct:   22 ERLSRVKHDGGEVDDLVDQALTSVDATLDDVAMVVQSNHHFRIAPFEDRLPWAVSQGHYPPSYIDPLNIFAGIPKREVSHHLAHAWSVITQAPFDEGLVVVMDGMGESY 130          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A0G4FTF1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FTF1_9ALVE)

HSP 1 Score: 145 bits (365), Expect = 4.940e-38
Identity = 70/112 (62.50%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ERLTR+KH GGD GELV HALD +GA L DV LVV NNHH R+APFEKR+PWAV+QG    ++    NLL  A   E+SHHLAHAW+A A +PFD GL+ V DGMG++  AM
Sbjct:   63 ERLTRAKHAGGDAGELVSHALDRVGASLSDVGLVVQNNHHHRIAPFEKRLPWAVSQGLYDPTFLDPHNLLGHAPRVEVSHHLAHAWAAFAQSPFDDGLVFVSDGMGDARSAM 174          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A482S4N1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4N1_9ARCH)

HSP 1 Score: 136 bits (342), Expect = 5.210e-38
Identity = 69/112 (61.61%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ERL+  KHDGG  GELV  AL S+G    DV LVVSNNHH RV PFEKR+P+A A  A P SY  + N  P     ELSHHLAHAWSA + AP   GL++VMDGMGESY AM
Sbjct:   77 ERLSNRKHDGGGIGELVKDALRSVGGTYTDVELVVSNNHHFRVLPFEKRLPFAKAINAAPNSYLDKYNCFPDKEQLELSHHLAHAWSAVSTAPVTMGLVVVMDGMGESYKAM 188          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A7S0P428_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P428_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 6.240e-38
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ER++R KHDGG+    V HAL+++ A  EDV L VSNNHH RV PFE+R+PWA A G  P  Y +  NLLP   H ELSHHLAHAWS  A APFDSGL++VMDGMGES   M
Sbjct:  115 ERISRVKHDGGELSGAVSHALEALDASPEDVVLAVSNNHHFRVLPFEQRLPWASAVGVYPTQYLAPLNLLPNVPHYELSHHLAHAWSVLADAPFDSGLVLVMDGMGESVRPM 226          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A0M0JZH7_9EUKA (Carbamoyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZH7_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 7.520e-36
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ERL+R KHDGGDT     HAL+++G+ +EDV  V +NNHH RVA FE R+PW+V  G    S  S++NLLPG  H ELSHHLAH W A   APF+ GL++VMDGMGE++ AM
Sbjct:   49 ERLSRLKHDGGDTAAATRHALEAVGSSIEDVVAVCANNHHHRVASFEGRLPWSVPMGLYATSALSDDNLLPGVPHFELSHHLAHVWCAITQAPFERGLVVVMDGMGETFAAM 160          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A0G4FRZ2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRZ2_VITBC)

HSP 1 Score: 137 bits (346), Expect = 1.880e-35
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESY 327
            ERL+R KHDGG+  +LV  AL S+ A L+DV +VV +NHH R+APFE R+PWAV+QG  P SY    N+  G    E+SHHLAHAWS    APFD GL++VMDGMGESY
Sbjct:  124 ERLSRVKHDGGEVDDLVDQALTSVDATLDDVAMVVQSNHHFRIAPFEDRLPWAVSQGHYPPSYIDPLNIFAGIPKREVSHHLAHAWSVITQAPFDEGLVVVMDGMGESY 232          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A7S3HRC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRC1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.440e-35
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGESYGAM 336
            ER++  KHDGG  G +V + L+S+GA+L+DV  VVSNNHH RV PFE+RV +  A    P  Y  E N+ P A   ELSHHLAHAWS    APFD G+ +VMDGMGES  AM
Sbjct:   31 ERISNRKHDGGSAGAIVRYGLESVGAKLQDVACVVSNNHHFRVLPFEQRVDFNKALNYIPSEYDDEYNMFPDAEKMELSHHLAHAWSVVGTAPFDQGVALVMDGMGESRKAM 142          
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Match: A0A7S3AC86_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC86_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 4.880e-34
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRVPWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLIIVMDGMGE 321
            ER+TR KHD G+TGELV HAL+S+G   EDV+LVV+NNHH RV PFEKR+P+AV  GA P S   ++ +       E+SHHLAHAWS   L PFD GLI+VMDGMGE
Sbjct:   93 ERITRRKHDAGETGELVAHALESLGLEAEDVKLVVTNNHHFRVLPFEKRLPFAVGIGAYPPSVL-QDPIRGKVEKMEISHHLAHAWSVLPLCPFDEGLIVVMDGMGE 198          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20039.6023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3R1_ECTSI8.110e-5887.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XZK2_9STRA4.990e-4063.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1K9F6_9ALVE1.720e-3959.63Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4FTF1_9ALVE4.940e-3862.50Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A482S4N1_9ARCH5.210e-3861.61Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S0P428_9EUKA6.240e-3861.61Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A0M0JZH7_9EUKA7.520e-3658.04Carbamoyltransferase n=1 Tax=Chrysochromulina tobi... [more]
A0A0G4FRZ2_VITBC1.880e-3559.63Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S3HRC1_9STRA4.440e-3556.25Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3AC86_9RHOD4.880e-3461.68Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20039contigL-elsbetiae_contig20039:507..1216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.2e-49
Seed eggNOG ortholog2880.D7G3R1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carbamoyltransferase C-terminus
EggNOG OGs2RKTV@2759,COG2192@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.683189-CDS-L-elsbetiae_contig20039:506..8121622815830.683189-CDS-L-elsbetiae_contig20039:506..812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20039 507..812 +
1691683131.5356345-CDS-L-elsbetiae_contig20039:506..8121691683131.5356345-CDS-L-elsbetiae_contig20039:506..812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20039 507..812 +
1622815830.6951356-CDS-L-elsbetiae_contig20039:1186..12161622815830.6951356-CDS-L-elsbetiae_contig20039:1186..1216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20039 1187..1216 +
1691683131.547374-CDS-L-elsbetiae_contig20039:1186..12161691683131.547374-CDS-L-elsbetiae_contig20039:1186..1216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20039 1187..1216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20039.6023.1prot_L-elsbetiae_contig20039.6023.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20039 507..1216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20039.6023.1

>prot_L-elsbetiae_contig20039.6023.1 ID=prot_L-elsbetiae_contig20039.6023.1|Name=mRNA_L-elsbetiae_contig20039.6023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
ERLTRSKHDGGDTGELVLHALDSIGARLEDVRLVVSNNHHCRVAPFEKRV
PWAVAQGACPESYASEENLLPGAAHAELSHHLAHAWSAAALAPFDSGLII
VMDGMGESYGAM
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mRNA from alignment at L-elsbetiae_contig20039:507..1216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20039.6023.1 ID=mRNA_L-elsbetiae_contig20039.6023.1|Name=mRNA_L-elsbetiae_contig20039.6023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=710bp|location=Sequence derived from alignment at L-elsbetiae_contig20039:507..1216+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGCCTGACGCGCTCCAAGCACGACGGCGGCGACACCGGGGAGCTCGT CTTGCACGCGCTCGACTCCATCGGCGCCCGCCTCGAAGACGTCCGCCTCG TCGTGTCCAACAACCACCACTGCCGCGTGGCCCCCTTCGAGAAGAGGGTG CCCTGGGCCGTGGCTCAGGGGGCCTGTCCCGAGAGCTACGCCTCGGAGGA GAACCTGCTCCCGGGGGCCGCGCACGCGGAGCTGTCGCACCATCTCGCTC ACGCCTGGAGCGCCGCGGCGCTGGCGCCCTTCGACTCGGGCCTGATCATC GTCATGGTGCGTGCAAGCACATGCGTTCGGGGAGAGCGGCGGTGTTGGGC GCACCAAGCCAACGCCGAGCGGATTCGGAGTTTGGGGGCTGGTATGAACG TGAACCGTCGTGGAGCATGTCTGTCGATGTCTGCGAGCCGCTTTTTGCGG TGAACTGGTGTGTGCTGTTTGTGAACCTCTCACCGGAAAAATAATCTAGT GTACGACAAGCCGCAATATAATGGTTCGAACCCCGTTCCCAGTTCGTTCA AGATGGGTTTTGTTCCGCACGTTTTCTCTCGTGGGTGCAGACTATGTATG TACCACTTTTCACACAACACACACAGGACCCCCCGATAAGACGTGAACAA CTCGTCGCGTCTCCTTCTTGTCTCGCGCAGGACGGGATGGGAGAGTCCTA CGGAGCCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20039:507..1216+

>mRNA_L-elsbetiae_contig20039.6023.1 ID=mRNA_L-elsbetiae_contig20039.6023.1|Name=mRNA_L-elsbetiae_contig20039.6023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig20039:507..1216+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGCCTGACGCGCTCCAAGCACGACGGCGGCGACACCGGGGAGCTCGT
CTTGCACGCGCTCGACTCCATCGGCGCCCGCCTCGAAGACGTCCGCCTCG
TCGTGTCCAACAACCACCACTGCCGCGTGGCCCCCTTCGAGAAGAGGGTG
CCCTGGGCCGTGGCTCAGGGGGCCTGTCCCGAGAGCTACGCCTCGGAGGA
GAACCTGCTCCCGGGGGCCGCGCACGCGGAGCTGTCGCACCATCTCGCTC
ACGCCTGGAGCGCCGCGGCGCTGGCGCCCTTCGACTCGGGCCTGATCATC
GTCATGGAGCGCCTGACGCGCTCCAAGCACGACGGCGGCGACACCGGGGA
GCTCGTCTTGCACGCGCTCGACTCCATCGGCGCCCGCCTCGAAGACGTCC
GCCTCGTCGTGTCCAACAACCACCACTGCCGCGTGGCCCCCTTCGAGAAG
AGGGTGCCCTGGGCCGTGGCTCAGGGGGCCTGTCCCGAGAGCTACGCCTC
GGAGGAGAACCTGCTCCCGGGGGCCGCGCACGCGGAGCTGTCGCACCATC
TCGCTCACGCCTGGAGCGCCGCGGCGCTGGCGCCCTTCGACTCGGGCCTG
ATCATCGTCATGGACGGGATGGGAGAGTCCTACGGAGCCATGGACGGGAT
GGGAGAGTCCTACGGAGCCATG
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