mRNA_L-elsbetiae_contig200.6013.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig200.6013.1
Unique NamemRNA_L-elsbetiae_contig200.6013.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig200.6013.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.420e-8
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   70 PKQECVDGITGILSGDGSVCCDINCGECGGGGC------FSLPGGPNSCCIGGDQGIMKVQEYCSVTGAAPCI 270
            P+ EC +GI GI  G+G VCC ++CG+CGG GC      F L  G  SCC GG   +     YC VTG APCI
Sbjct:   91 PEGECNNGIEGI-DGNGVVCCPLDCGQCGGEGCSGSGADFGL--GSESCCGGG---VKSANNYCDVTGKAPCI 157
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BLAST of mRNA_L-elsbetiae_contig200.6013.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.780e-6
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   82 CVDGITGILSGDGSVCCDINCGECGGGGCFSLPG--GPNSCCIGGDQGIMKVQEYCSVTGAAPCIVKEY 282
            C +GI G    DG  CC  NCG+CGGGGC S+PG  G ++CC      +      CS TG +PC++  Y
Sbjct:  455 CSNGILGYQ--DGPACCAANCGQCGGGGCGSVPGTAGASACC---SSDVELAGNLCSATGVSPCVIDNY 518
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BLAST of mRNA_L-elsbetiae_contig200.6013.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   76 QECVDGITGILSGDGSVCCDINCGECGGGGCFSLPG----GPNSCCIGGDQGIMKVQEYCSVTGAAPCIV 273
            + C +G+ GI  G G VCC ++CG+CGG GC++       G + CC GG   I    EYC  T  APCI+
Sbjct:  239 ETCSNGLEGI-DGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGG---IKASDEYCDETNEAPCII 304
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BLAST of mRNA_L-elsbetiae_contig200.6013.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-5
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   82 CVDGITGILSGDGSVCCDINCGECGGGGCFS--LPG-GPNSCCIGGDQGIMKVQEYCSVTGAAPCIVKEYIN 288
            C  GI GI S DG+VCC INC +CGG GC +  LP  G  SCC   +  +      CSV+  APC++ + ++
Sbjct:  676 CSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCC---ELDVQSAGVSCSVSEEAPCVLDDVLS 744
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig200.6013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8L8_ECTSI7.420e-849.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM1_ECTSI1.780e-643.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZG5_9PHAE1.860e-542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI7.010e-543.06EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig200contigL-elsbetiae_contig200:14674..16740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D7FHN6
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons3
Model size1597
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig200.6013.1prot_L-elsbetiae_contig200.6013.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig200 15970..16740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.5261898-UTR-L-elsbetiae_contig200:14673..159691622815829.5261898-UTR-L-elsbetiae_contig200:14673..15969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 14674..15969 -
1691683130.7189102-UTR-L-elsbetiae_contig200:14673..159691691683130.7189102-UTR-L-elsbetiae_contig200:14673..15969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 14674..15969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.5361562-CDS-L-elsbetiae_contig200:15969..161901622815829.5361562-CDS-L-elsbetiae_contig200:15969..16190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 15970..16190 -
1691683130.731601-CDS-L-elsbetiae_contig200:15969..161901691683130.731601-CDS-L-elsbetiae_contig200:15969..16190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 15970..16190 -
1622815829.548892-CDS-L-elsbetiae_contig200:16319..163311622815829.548892-CDS-L-elsbetiae_contig200:16319..16331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 16320..16331 -
1691683130.7466033-CDS-L-elsbetiae_contig200:16319..163311691683130.7466033-CDS-L-elsbetiae_contig200:16319..16331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 16320..16331 -
1622815829.5641015-CDS-L-elsbetiae_contig200:16673..167401622815829.5641015-CDS-L-elsbetiae_contig200:16673..16740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 16674..16740 -
1691683130.7589626-CDS-L-elsbetiae_contig200:16673..167401691683130.7589626-CDS-L-elsbetiae_contig200:16673..16740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 16674..16740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig200.6013.1

>prot_L-elsbetiae_contig200.6013.1 ID=prot_L-elsbetiae_contig200.6013.1|Name=mRNA_L-elsbetiae_contig200.6013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
VPYYAAPAPTPSGWIWPRSSKPAPKQECVDGITGILSGDGSVCCDINCGE
CGGGGCFSLPGGPNSCCIGGDQGIMKVQEYCSVTGAAPCIVKEYINYDK*
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mRNA from alignment at L-elsbetiae_contig200:14674..16740-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig200.6013.1 ID=mRNA_L-elsbetiae_contig200.6013.1|Name=mRNA_L-elsbetiae_contig200.6013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2067bp|location=Sequence derived from alignment at L-elsbetiae_contig200:14674..16740- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCGTACTACGCGGCTCCCGCCCCTACACCCTCTGGATGGATATGGCC
ACGTAGTTCAAAGCCAGGTACGATGTGCGGCTGGCTATTGTGGTATTTTT
CCGTCGGGTGCATTGTGCCGCGCAACCGAGCTTGAGGTCATCTGAAACGA
ACAAGTGTTGGTTTAGCTTGGTTTAGGTACCGATTTGAGGACGCACTTCG
AAGGTTTGCTTCCTTATGGTGTACGTGTGCTACAAATACATTAATGGACA
TGTTTAAGGTATATTACAGATGCTGAATATATTTGGCTTACCTGTATTCC
GTTGTCTGTTCCTTTCCGATGACCCGGCAAATATCGAATGCTGTGGTTCG
TTCCTGCCGTACGACGCGACTCCCGCCCCTATACTCTCTGGATGGATGTG
GTCACGTAGCGCCAAAGCAAGGTACGATGTGCGGCTGACGCTCTCTAGGG
TCGCTGTTGTGACTGCGTGCACGCTTGTCCTTTCGAACATATTCTCCTGA
ACATGACACACAGTTCTTCTGGCCTTGCTCGTTACTGGTGATATTCACAG
AGTGCGTGGACGGCATTACCGGTATTCTGTCCGGCGACGGCAGCGTGTGC
TGCGACATAAACTGTGGAGAGTGTGGAGGTGGCGGCTGCTTCTCCTTGCC
CGGGGGACCGAACAGCTGCTGCATCGGCGGAGACCAGGGCATCATGAAAG
TCCAGGAATATTGTTCCGTGACTGGAGCTGCCCCGTGCATCGTTAAAGAG
TACATCAACTACGACAAGTAGCTGAATGTATGGAGCTAGCTGGGCCCCCC
TCTCCATATTTAGCTATGATGCGGCCGGTACTGCGCCCAAATTCTAGCTT
TTCACTTCCCAGCGCCGTCAGGTTCATCTGATGCTAATTAGATCGGGTAC
TGAAACGATAACCCGATCTACCGAGCATCGCATAGATATTGCGCATGCAG
TGCGCGTTGGTGCCTGATTGATGTCAGCTACATGTATTTCTTCCTACTTC
CCGTCTGTGTGTTGTCTCGATTGGAATAGCTTTGCACTTTCAATTGGATA
TTGATGTGTGCTGATGGTTGTGTTAACTTGTGATGTTTTGGTTTTGGCTT
TTTGGTTTGGGGGAGGGAATACTATTGTGTGACGATTGTTTTTTATTTTT
GACCAGCCGTCTTGACCGGTCGTAATGTTTGACTCAGGGCGCTGATTTCG
ACCATTAAAGCACGACCCACTAGCAGAATATCTATTGGTATTTTGGTGAA
TTATATGTATTTTCATAGTATCCATTGGTACTTTCATCTGCGAGTTGTCT
TTGAAAGCCACGTATTGTAGACTGCATACTAATAATCTTCTCATGCTTTT
TTTCTTCAGAATGAATCCGTTCAGTACACGTTTAGGTACCCCCAGTACCA
GGCGGCTTTTATTTGTTTTGCTTTAACTGGGTTCAAACATTATCCATTAC
CCCACTAGTAGCATATCTGTTGAACTATCTGTTGGTACTTTCACCTGTGA
ATTATGTGTTTACATGGTATCTATTCGTTCTTTCACCTTCAATTGTGTTT
AAATAGTCACGTAGACTACGAATCTCTCATCATGCTTTTTTTTCAGAATT
CGTCCAGCACACGTTAGGGATTATGAGTTACATACACCCAGTATCAGGCG
GTTTTTGATTTTTTTTGCTATTGAACTAGCTATTATGTAGGTTGGGCGGT
GTGTGTGTACTTTCTAGGCGTGGTTGTTGTTTTTCGGGATGTTCCCAGCA
GGTTCTGGGAATGGCTAAAAATAGGTGGGGGGCAGAGCATTCGATATCTG
CAAGATTGTTTCAAGAGGATCGTCGTGGTTGGTGACATATTGTTTGTTTT
TTTGTGGGATGAAGTACCCTGAGGCGACGGTAAATGGCCCACAATTGTTT
TCGCAGCGCGAACCTCGCGAAAAACTTTGGCGCATTCGAACGCTTTTCGA
GGAGTCATGCCAGATAGGGCTTGCACTTCTGGGCTAAAATACGACTGATT
CGGGGAAGGCTTCTAAACCTGGGGACCACCAGAAATATTGGCAACACCAG
TTATTCTCATTTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig200:14674..16740-

>mRNA_L-elsbetiae_contig200.6013.1 ID=mRNA_L-elsbetiae_contig200.6013.1|Name=mRNA_L-elsbetiae_contig200.6013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig200:14674..16740- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCGTACTACGCGGCTCCCGCCCCTACACCCTCTGGATGGATATGGCC
ACGTAGTTCAAAGCCAGGTGCCGTACTACGCGGCTCCCGCCCCTACACCC
TCTGGATGGATATGGCCACGTAGTTCAAAGCCAGCGCCAAAGCAAGCGCC
AAAGCAAGAGTGCGTGGACGGCATTACCGGTATTCTGTCCGGCGACGGCA
GCGTGTGCTGCGACATAAACTGTGGAGAGTGTGGAGGTGGCGGCTGCTTC
TCCTTGCCCGGGGGACCGAACAGCTGCTGCATCGGCGGAGACCAGGGCAT
CATGAAAGTCCAGGAATATTGTTCCGTGACTGGAGCTGCCCCGTGCATCG
TTAAAGAGTACATCAACTACGACAAGTAGAGTGCGTGGACGGCATTACCG
GTATTCTGTCCGGCGACGGCAGCGTGTGCTGCGACATAAACTGTGGAGAG
TGTGGAGGTGGCGGCTGCTTCTCCTTGCCCGGGGGACCGAACAGCTGCTG
CATCGGCGGAGACCAGGGCATCATGAAAGTCCAGGAATATTGTTCCGTGA
CTGGAGCTGCCCCGTGCATCGTTAAAGAGTACATCAACTACGACAAGTAG
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