mRNA_L-elsbetiae_contig200.6016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig200.6016.1
Unique NamemRNA_L-elsbetiae_contig200.6016.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig200.6016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig200contigL-elsbetiae_contig200:44454..44814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size361
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.2585864-CDS-L-elsbetiae_contig200:44453..447651622815829.2585864-CDS-L-elsbetiae_contig200:44453..44765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 44454..44765 +
1691683130.5298867-CDS-L-elsbetiae_contig200:44453..447651691683130.5298867-CDS-L-elsbetiae_contig200:44453..44765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 44454..44765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.2724242-UTR-L-elsbetiae_contig200:44765..448141622815829.2724242-UTR-L-elsbetiae_contig200:44765..44814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 44766..44814 +
1691683130.5387025-UTR-L-elsbetiae_contig200:44765..448141691683130.5387025-UTR-L-elsbetiae_contig200:44765..44814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 44766..44814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig200.6016.1prot_L-elsbetiae_contig200.6016.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig200 44454..44765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig200.6016.1

>prot_L-elsbetiae_contig200.6016.1 ID=prot_L-elsbetiae_contig200.6016.1|Name=mRNA_L-elsbetiae_contig200.6016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
RSQVFRVAFNLLAVFGQKTTLNAVLGGAKTASPRLFSRLRKRVQQTPLSF
QNATFCYRLKNSGILFLLFYGTESKFLRPHRTRNVPSLTHEGPTFNVSTL
VQT*
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mRNA from alignment at L-elsbetiae_contig200:44454..44814+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig200.6016.1 ID=mRNA_L-elsbetiae_contig200.6016.1|Name=mRNA_L-elsbetiae_contig200.6016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=361bp|location=Sequence derived from alignment at L-elsbetiae_contig200:44454..44814+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTCACAAGTCTTCCGAGTTGCTTTCAATCTCTTGGCTGTCTTCGGGCA
AAAAACTACACTGAACGCAGTACTCGGGGGCGCGAAGACTGCATCCCCCC
GCCTTTTTTCACGACTTCGCAAACGCGTTCAACAAACACCGCTTTCCTTT
CAGAACGCTACATTTTGTTATAGGCTCAAGAATTCTGGCATTCTTTTTCT
ACTCTTCTACGGTACTGAGTCCAAATTTTTGAGACCGCATAGAACACGAA
ACGTACCGTCCCTCACACACGAGGGTCCAACCTTCAATGTCTCCACACTC
GTCCAAACTTGAAGACTCAGCCAACCCGGTACGAAGGTAGCCTCCACCCC
TGTGGGACTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig200:44454..44814+

>mRNA_L-elsbetiae_contig200.6016.1 ID=mRNA_L-elsbetiae_contig200.6016.1|Name=mRNA_L-elsbetiae_contig200.6016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig200:44454..44814+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTCACAAGTCTTCCGAGTTGCTTTCAATCTCTTGGCTGTCTTCGGGCA
AAAAACTACACTGAACGCAGTACTCGGGGGCGCGAAGACTGCATCCCCCC
GCCTTTTTTCACGACTTCGCAAACGCGTTCAACAAACACCGCTTTCCTTT
CAGAACGCTACATTTTGTTATAGGCTCAAGAATTCTGGCATTCTTTTTCT
ACTCTTCTACGGTACTGAGTCCAAATTTTTGAGACCGCATAGAACACGAA
ACGTACCGTCCCTCACACACGAGGGTCCAACCTTCAATGTCTCCACACTC
GTCCAAACTTGAAGGTCACAAGTCTTCCGAGTTGCTTTCAATCTCTTGGC
TGTCTTCGGGCAAAAAACTACACTGAACGCAGTACTCGGGGGCGCGAAGA
CTGCATCCCCCCGCCTTTTTTCACGACTTCGCAAACGCGTTCAACAAACA
CCGCTTTCCTTTCAGAACGCTACATTTTGTTATAGGCTCAAGAATTCTGG
CATTCTTTTTCTACTCTTCTACGGTACTGAGTCCAAATTTTTGAGACCGC
ATAGAACACGAAACGTACCGTCCCTCACACACGAGGGTCCAACCTTCAAT
GTCTCCACACTCGTCCAAACTTGA
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