mRNA_L-elsbetiae_contig19963.5984.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19963.5984.1
Unique NamemRNA_L-elsbetiae_contig19963.5984.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19963.5984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19963contigL-elsbetiae_contig19963:1301..2098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size798
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19963.5984.1prot_L-elsbetiae_contig19963.5984.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19963 1671..2090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9958093-UTR-L-elsbetiae_contig19963:1300..16701622815824.9958093-UTR-L-elsbetiae_contig19963:1300..1670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19963 1301..1670 +
1691683127.2710083-UTR-L-elsbetiae_contig19963:1300..16701691683127.2710083-UTR-L-elsbetiae_contig19963:1300..1670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19963 1301..1670 +
1622815825.024474-UTR-L-elsbetiae_contig19963:2090..20981622815825.024474-UTR-L-elsbetiae_contig19963:2090..2098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19963 2091..2098 +
1691683127.2885356-UTR-L-elsbetiae_contig19963:2090..20981691683127.2885356-UTR-L-elsbetiae_contig19963:2090..2098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19963 2091..2098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.009723-CDS-L-elsbetiae_contig19963:1670..20901622815825.009723-CDS-L-elsbetiae_contig19963:1670..2090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19963 1671..2090 +
1691683127.2800927-CDS-L-elsbetiae_contig19963:1670..20901691683127.2800927-CDS-L-elsbetiae_contig19963:1670..2090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19963 1671..2090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19963.5984.1

>prot_L-elsbetiae_contig19963.5984.1 ID=prot_L-elsbetiae_contig19963.5984.1|Name=mRNA_L-elsbetiae_contig19963.5984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MTYIRAFRVFRNRWGGSVVGQKPRRVTCRFGHYDAELKKRQLGFGDLFFA
IRQKQKGKRCERTHGTRTRTRPVFFHVHFVSRCFFPSAFYFRVLLSTTAL
LCIAAFSEKNVAGFVSLAPSLYSSHTDWYTLKTVVLLLV*
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mRNA from alignment at L-elsbetiae_contig19963:1301..2098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19963.5984.1 ID=mRNA_L-elsbetiae_contig19963.5984.1|Name=mRNA_L-elsbetiae_contig19963.5984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig19963:1301..2098+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCTTTGTAGAAGGAGTACGTGAGATCATTGCCTCGTCTAGCGGGGGGG
GTGGGGGCATTGTACTTTTCGGTTTTTTTTTTGCTCCATGCGTTTTTTCG
ATCATAACGAAAAAAAAAGCTGACGTATATGTACGTATCCGTTGAGCTGG
TTCAATTTCATTATTAATAATTTTTATACGGTTTTGTATAGGCGTGATGG
AGAGTTTTGTTCTTTCACGCCGCCGCCGGTGCCGCTGCCGCTGCCGCCGT
CCGTGCGATGGGCATGCGCTCTGTTCTCCTGCCTTTGTTCTTCGATTTTT
AGTTAATTCTCAAGAGAGCGAGATTTATTGACTTTCCTGATTGTCCTTCC
GAGATATATAGGAGGAGTGCATGACATACATACGAGCGTTCAGGGTTTTC
CGCAATAGGTGGGGGGGGAGTGTCGTCGGGCAAAAGCCGCGCCGTGTAAC
TTGCCGGTTCGGTCATTATGATGCTGAACTAAAAAAACGCCAACTTGGAT
TTGGTGATTTATTTTTTGCGATTCGCCAAAAACAAAAAGGCAAAAGATGT
GAGCGCACGCACGGCACACGCACACGCACCAGACCTGTATTTTTCCATGT
TCATTTTGTTTCCCGGTGTTTTTTTCCATCTGCGTTTTATTTTCGGGTAT
TGTTGTCCACTACTGCTCTGCTCTGTATCGCAGCGTTCAGTGAAAAAAAT
GTAGCGGGTTTTGTTTCTCTTGCGCCCTCTTTATATAGCTCGCACACTGA
TTGGTACACACTCAAGACTGTTGTGCTGTTGTTGGTGTAATGATGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19963:1301..2098+

>mRNA_L-elsbetiae_contig19963.5984.1 ID=mRNA_L-elsbetiae_contig19963.5984.1|Name=mRNA_L-elsbetiae_contig19963.5984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig19963:1301..2098+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACATACATACGAGCGTTCAGGGTTTTCCGCAATAGGTGGGGGGGGAG
TGTCGTCGGGCAAAAGCCGCGCCGTGTAACTTGCCGGTTCGGTCATTATG
ATGCTGAACTAAAAAAACGCCAACTTGGATTTGGTGATTTATTTTTTGCG
ATTCGCCAAAAACAAAAAGGCAAAAGATGTGAGCGCACGCACGGCACACG
CACACGCACCAGACCTGTATTTTTCCATGTTCATTTTGTTTCCCGGTGTT
TTTTTCCATCTGCGTTTTATTTTCGGGTATTGTTGTCCACTACTGCTCTG
CTCTGTATCGCAGCGTTCAGTGAAAAAAATGTAGCGGGTTTTGTTTCTCT
TGCGCCCTCTTTATATAGCTCGCACACTGATTGGTACACACTCAAGACTG
TTGTGCTGTTGTTGGTGTAAATGACATACATACGAGCGTTCAGGGTTTTC
CGCAATAGGTGGGGGGGGAGTGTCGTCGGGCAAAAGCCGCGCCGTGTAAC
TTGCCGGTTCGGTCATTATGATGCTGAACTAAAAAAACGCCAACTTGGAT
TTGGTGATTTATTTTTTGCGATTCGCCAAAAACAAAAAGGCAAAAGATGT
GAGCGCACGCACGGCACACGCACACGCACCAGACCTGTATTTTTCCATGT
TCATTTTGTTTCCCGGTGTTTTTTTCCATCTGCGTTTTATTTTCGGGTAT
TGTTGTCCACTACTGCTCTGCTCTGTATCGCAGCGTTCAGTGAAAAAAAT
GTAGCGGGTTTTGTTTCTCTTGCGCCCTCTTTATATAGCTCGCACACTGA
TTGGTACACACTCAAGACTGTTGTGCTGTTGTTGGTGTAA
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