mRNA_L-elsbetiae_contig19943.5980.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19943.5980.1
Unique NamemRNA_L-elsbetiae_contig19943.5980.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19943.5980.1 vs. uniprot
Match: A0A6H5L6Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.510e-65
Identity = 144/276 (52.17%), Postives = 182/276 (65.94%), Query Frame = 2 
Query:  254 LERAARGVLLDVQERHGLG-GVT-HGTPIPPPGVLSAGSDFAAQTNTVLGERFQQDPANRLWVCTLSYESALRKLSASGEAVSGKKIARKLAAARLVAGLIESTDPAGTDLAVATDEEASADNTWAKQDESVAEMSEQLSANTGGCGIAVEVDRSEGDTEFDITIDDAHLAAQRCLERAARGVLLNVQERHGLGGVETEHGTPIPPPGVLSAASDFAAQTNAVLKESFQQNPANRLWVCSLSHQSALRKLSASGEAVSGKKIARKLAAVRLVAELL 1075
            LE  ARGVLLDVQ++HGLG GV+ +GTPIPPPGVLSA   F  +T  V+ E F QD  +RLW CTLSY+SALR++ A+GEAVSGKK+ARKLAAARLVA LI +T   GT+        A A     ++D      S   + ++        V+ S        +  D   AA R  E  ARGVLL+VQ +HGLG   + +GTPIPPPGVLSA   F+  T  V+ E+F Q+  +RLW C+LS++SALR++ A+GEAVSGKK+ARKLAA RLVA L+
Sbjct:   52 LEHGARGVLLDVQDKHGLGVGVSPNGTPIPPPGVLSAADLFVEKTMGVVTETFNQDSTSRLWACTLSYKSALREVHATGEAVSGKKVARKLAAARLVASLISAT---GTNELDRGGSAAGAMPDMPEEDGMTGRQSPDTNVDSESSVPRGTVNSSTS------SYGDGGSAALRSFEGGARGVLLDVQNKHGLGVGVSPNGTPIPPPGVLSALHSFSENTMGVVTETFNQDSTSRLWACTLSYKSALREVHATGEAVSGKKVARKLAAARLVASLI 318
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BLAST of mRNA_L-elsbetiae_contig19943.5980.1 vs. uniprot
Match: D7FR00_ECTSI (ATP-dependent RNA helicase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR00_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.920e-65
Identity = 148/279 (53.05%), Postives = 186/279 (66.67%), Query Frame = 2 
Query:  254 LERAARGVLLDVQERHGLG-GVT-HGTPIPPPGVLSAGSDFAAQTNTVLGERFQQDPANRLWVCTLSYESALRKLSASGEAVSGKKIARKLAAARLVAGLIESTDP----AGTDLAVATDEEASADNTWAKQDESVAEMSEQLSANTGGCGIAVEVDRSEGDTEFDITIDDAHLAAQRCLERAARGVLLNVQERHGLGGVETEHGTPIPPPGVLSAASDFAAQTNAVLKESFQQNPANRLWVCSLSHQSALRKLSASGEAVSGKKIARKLAAVRLVAEL 1072
            LE  ARGVLLDVQ++HGLG GV+ +GTPIPPPGVLSA   FA +T  ++ E F QD  +RLW CTLSY+SALR++ ASGEAVSGKK+ARKLAAARLVA LI +T       G+  AVA  EE +   T  +  ++       L + TG          S+GD            AA +  ER AR VLL+VQ++HGLG   + +GTPIPP GVLSA   FA +T  V+ E+F Q+  +RLW C+LS++SALR++ ASGEAVSGK++ARKLAA RLVA L
Sbjct:  570 LEHGARGVLLDVQDKHGLGVGVSPNGTPIPPPGVLSAVHLFAEKTMGIVMETFNQDSTSRLWACTLSYKSALREVHASGEAVSGKKVARKLAAARLVASLISATGTNELHRGSGAAVAMPEEETTAMTGRQPPDANVRSESSLGSGTGNSSTT-----SDGDDGS---------AALQSFERGARAVLLDVQDKHGLGVGVSPNGTPIPPSGVLSAVDIFAEKTMGVVTETFNQDSTSRLWACTLSYKSALREVHASGEAVSGKQMARKLAAARLVASL 834
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19943.5980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Q7_9PHAE1.510e-6552.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR00_ECTSI4.920e-6553.05ATP-dependent RNA helicase, putative n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19943contigL-elsbetiae_contig19943:338..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue2.1e-60
Seed eggNOG ortholog2880.D7FR00
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG1111@1,KOG0354@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionATP-dependent RNA helicase, putative
Ec32 orthologEc-09_003090.1
Exons1
Model size1259
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19943.5980.1prot_L-elsbetiae_contig19943.5980.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19943 438..1430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.765982-UTR-L-elsbetiae_contig19943:337..4371622815824.765982-UTR-L-elsbetiae_contig19943:337..437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19943 338..437 +
1691683127.1134455-UTR-L-elsbetiae_contig19943:337..4371691683127.1134455-UTR-L-elsbetiae_contig19943:337..437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19943 338..437 +
1622815824.7862005-UTR-L-elsbetiae_contig19943:1430..15961622815824.7862005-UTR-L-elsbetiae_contig19943:1430..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19943 1431..1596 +
1691683127.141521-UTR-L-elsbetiae_contig19943:1430..15961691683127.141521-UTR-L-elsbetiae_contig19943:1430..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19943 1431..1596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.7762175-CDS-L-elsbetiae_contig19943:437..14301622815824.7762175-CDS-L-elsbetiae_contig19943:437..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19943 438..1430 +
1691683127.1283529-CDS-L-elsbetiae_contig19943:437..14301691683127.1283529-CDS-L-elsbetiae_contig19943:437..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19943 438..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19943.5980.1

>prot_L-elsbetiae_contig19943.5980.1 ID=prot_L-elsbetiae_contig19943.5980.1|Name=mRNA_L-elsbetiae_contig19943.5980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp
MNREADQDERRPEPRFASIDGRSLYFGLAGNEGDTESDIGTDDAHLTTQL
CLERAARGVLLDVQERHGLGGVTHGTPIPPPGVLSAGSDFAAQTNTVLGE
RFQQDPANRLWVCTLSYESALRKLSASGEAVSGKKIARKLAAARLVAGLI
ESTDPAGTDLAVATDEEASADNTWAKQDESVAEMSEQLSANTGGCGIAVE
VDRSEGDTEFDITIDDAHLAAQRCLERAARGVLLNVQERHGLGGVETEHG
TPIPPPGVLSAASDFAAQTNAVLKESFQQNPANRLWVCSLSHQSALRKLS
ASGEAVSGKKIARKLAAVRLVAELLVLVPA*
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mRNA from alignment at L-elsbetiae_contig19943:338..1596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19943.5980.1 ID=mRNA_L-elsbetiae_contig19943.5980.1|Name=mRNA_L-elsbetiae_contig19943.5980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1259bp|location=Sequence derived from alignment at L-elsbetiae_contig19943:338..1596+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTCTGGAGCTCTGCATCTCTAATACATGTGATAAACTCGATCTCTC
CTTCTCAAGTAAAGGACATAGATATATCGTCAACAGACGACGCGTTTAGC
ATGAACCGAGAGGCCGACCAGGACGAGAGACGGCCGGAGCCACGTTTTGC
CAGCATAGATGGGCGTAGCCTATATTTTGGACTCGCCGGGAATGAAGGGG
ATACCGAGTCTGACATTGGTACCGATGACGCACATTTGACTACACAGCTG
TGTCTTGAACGCGCAGCTCGCGGCGTTCTGCTCGACGTGCAGGAGCGGCA
CGGCCTTGGCGGGGTGACACACGGAACCCCGATCCCCCCTCCCGGAGTGC
TCAGTGCAGGGAGCGACTTCGCAGCGCAGACAAACACTGTTCTCGGGGAG
AGGTTCCAACAGGATCCAGCGAACCGTCTGTGGGTGTGTACCTTGTCGTA
TGAGTCTGCACTGCGCAAGCTGAGCGCGTCAGGGGAGGCGGTGAGCGGCA
AGAAGATTGCGAGAAAGCTGGCAGCGGCCAGGCTTGTCGCAGGTCTCATT
GAAAGTACAGACCCGGCCGGGACGGATTTGGCTGTTGCTACGGACGAAGA
AGCCAGCGCCGACAACACGTGGGCCAAGCAGGATGAAAGTGTGGCGGAAA
TGTCGGAGCAGCTTTCGGCAAACACAGGCGGGTGCGGTATAGCTGTTGAA
GTCGATCGCAGTGAAGGGGATACCGAGTTTGACATTACGATCGATGATGC
GCATTTGGCGGCACAGCGGTGCCTTGAACGCGCAGCTCGCGGCGTTCTGC
TCAATGTGCAGGAGCGGCACGGCCTGGGCGGGGTGGAGACTGAACACGGA
ACGCCGATCCCCCCTCCCGGGGTGCTGAGTGCAGCGAGCGACTTCGCAGC
GCAGACTAACGCTGTTCTCAAGGAGAGCTTCCAACAGAATCCAGCGAACC
GTCTGTGGGTGTGTAGTTTGTCGCACCAGTCTGCGCTGCGCAAGCTGAGC
GCGTCAGGGGAGGCGGTGAGCGGCAAGAAGATTGCGAGAAAGTTGGCAGC
TGTGAGGCTTGTGGCTGAGCTCCTTGTGTTAGTTCCGGCGTGATTTGGCT
GATCGGGCACTTTAGAAATACTTCTATGAAGAAATTGCTTTGTCATGTTT
ATTCTGTGGATACTGTTGTATGTTCTCTCGCTTGAGGCTTTGGCTTGCTG
CGTACCTCAAAGTGATGTTTGTTGACTCTCTTTACTTCTACCGGTGCACA
TTGTTGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19943:338..1596+

>mRNA_L-elsbetiae_contig19943.5980.1 ID=mRNA_L-elsbetiae_contig19943.5980.1|Name=mRNA_L-elsbetiae_contig19943.5980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig19943:338..1596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCGAGAGGCCGACCAGGACGAGAGACGGCCGGAGCCACGTTTTGC
CAGCATAGATGGGCGTAGCCTATATTTTGGACTCGCCGGGAATGAAGGGG
ATACCGAGTCTGACATTGGTACCGATGACGCACATTTGACTACACAGCTG
TGTCTTGAACGCGCAGCTCGCGGCGTTCTGCTCGACGTGCAGGAGCGGCA
CGGCCTTGGCGGGGTGACACACGGAACCCCGATCCCCCCTCCCGGAGTGC
TCAGTGCAGGGAGCGACTTCGCAGCGCAGACAAACACTGTTCTCGGGGAG
AGGTTCCAACAGGATCCAGCGAACCGTCTGTGGGTGTGTACCTTGTCGTA
TGAGTCTGCACTGCGCAAGCTGAGCGCGTCAGGGGAGGCGGTGAGCGGCA
AGAAGATTGCGAGAAAGCTGGCAGCGGCCAGGCTTGTCGCAGGTCTCATT
GAAAGTACAGACCCGGCCGGGACGGATTTGGCTGTTGCTACGGACGAAGA
AGCCAGCGCCGACAACACGTGGGCCAAGCAGGATGAAAGTGTGGCGGAAA
TGTCGGAGCAGCTTTCGGCAAACACAGGCGGGTGCGGTATAGCTGTTGAA
GTCGATCGCAGTGAAGGGGATACCGAGTTTGACATTACGATCGATGATGC
GCATTTGGCGGCACAGCGGTGCCTTGAACGCGCAGCTCGCGGCGTTCTGC
TCAATGTGCAGGAGCGGCACGGCCTGGGCGGGGTGGAGACTGAACACGGA
ACGCCGATCCCCCCTCCCGGGGTGCTGAGTGCAGCGAGCGACTTCGCAGC
GCAGACTAACGCTGTTCTCAAGGAGAGCTTCCAACAGAATCCAGCGAACC
GTCTGTGGGTGTGTAGTTTGTCGCACCAGTCTGCGCTGCGCAAGCTGAGC
GCGTCAGGGGAGGCGGTGAGCGGCAAGAAGATTGCGAGAAAGTTGGCAGC
TGTGAGGCTTGTGGCTGAGCTCCTTGTGTTAGTTCCGGCGTGAATGAACC
GAGAGGCCGACCAGGACGAGAGACGGCCGGAGCCACGTTTTGCCAGCATA
GATGGGCGTAGCCTATATTTTGGACTCGCCGGGAATGAAGGGGATACCGA
GTCTGACATTGGTACCGATGACGCACATTTGACTACACAGCTGTGTCTTG
AACGCGCAGCTCGCGGCGTTCTGCTCGACGTGCAGGAGCGGCACGGCCTT
GGCGGGGTGACACACGGAACCCCGATCCCCCCTCCCGGAGTGCTCAGTGC
AGGGAGCGACTTCGCAGCGCAGACAAACACTGTTCTCGGGGAGAGGTTCC
AACAGGATCCAGCGAACCGTCTGTGGGTGTGTACCTTGTCGTATGAGTCT
GCACTGCGCAAGCTGAGCGCGTCAGGGGAGGCGGTGAGCGGCAAGAAGAT
TGCGAGAAAGCTGGCAGCGGCCAGGCTTGTCGCAGGTCTCATTGAAAGTA
CAGACCCGGCCGGGACGGATTTGGCTGTTGCTACGGACGAAGAAGCCAGC
GCCGACAACACGTGGGCCAAGCAGGATGAAAGTGTGGCGGAAATGTCGGA
GCAGCTTTCGGCAAACACAGGCGGGTGCGGTATAGCTGTTGAAGTCGATC
GCAGTGAAGGGGATACCGAGTTTGACATTACGATCGATGATGCGCATTTG
GCGGCACAGCGGTGCCTTGAACGCGCAGCTCGCGGCGTTCTGCTCAATGT
GCAGGAGCGGCACGGCCTGGGCGGGGTGGAGACTGAACACGGAACGCCGA
TCCCCCCTCCCGGGGTGCTGAGTGCAGCGAGCGACTTCGCAGCGCAGACT
AACGCTGTTCTCAAGGAGAGCTTCCAACAGAATCCAGCGAACCGTCTGTG
GGTGTGTAGTTTGTCGCACCAGTCTGCGCTGCGCAAGCTGAGCGCGTCAG
GGGAGGCGGTGAGCGGCAAGAAGATTGCGAGAAAGTTGGCAGCTGTGAGG
CTTGTGGCTGAGCTCCTTGTGTTAGTTCCGGCGTGA
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