mRNA_L-elsbetiae_contig19934.5976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19934.5976.1
Unique NamemRNA_L-elsbetiae_contig19934.5976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19934.5976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19934contigL-elsbetiae_contig19934:1026..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19934.5976.1prot_L-elsbetiae_contig19934.5976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19934 1136..2207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.4361503-UTR-L-elsbetiae_contig19934:1025..11351622815824.4361503-UTR-L-elsbetiae_contig19934:1025..1135Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19934 1026..1135 +
1691683126.9153903-UTR-L-elsbetiae_contig19934:1025..11351691683126.9153903-UTR-L-elsbetiae_contig19934:1025..1135Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19934 1026..1135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.4483147-CDS-L-elsbetiae_contig19934:1135..11671622815824.4483147-CDS-L-elsbetiae_contig19934:1135..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19934 1136..1167 +
1691683126.9256968-CDS-L-elsbetiae_contig19934:1135..11671691683126.9256968-CDS-L-elsbetiae_contig19934:1135..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19934 1136..1167 +
1622815824.4600036-CDS-L-elsbetiae_contig19934:1966..22071622815824.4600036-CDS-L-elsbetiae_contig19934:1966..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19934 1967..2207 +
1691683126.933791-CDS-L-elsbetiae_contig19934:1966..22071691683126.933791-CDS-L-elsbetiae_contig19934:1966..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19934 1967..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19934.5976.1

>prot_L-elsbetiae_contig19934.5976.1 ID=prot_L-elsbetiae_contig19934.5976.1|Name=mRNA_L-elsbetiae_contig19934.5976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MPRRKPSNPTRRNVTGDGIGGLPAPAESSSSPARALIGSSSPAASGGGDG
PSCGEIMTEAGAGEESIFAVEDEEEEEEEEEDEGGEQVEVA
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mRNA from alignment at L-elsbetiae_contig19934:1026..2207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19934.5976.1 ID=mRNA_L-elsbetiae_contig19934.5976.1|Name=mRNA_L-elsbetiae_contig19934.5976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig19934:1026..2207+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCCAGCAACTCAGACAGGCCAGCCAAGTGCTGTGCGCTGTGAGTGGCA
GAGCGAGAGAGGACGCGAGACCTAGGGGTACCGACTGAACCTGTTCAGTC
AGTTTCTTGAATGCCTCGCCGTAAGCCTTCAAATCCTACCAGGTGAGTCT
TAATCTTGGACAGTCAGTACGACGGGAAAACAAGACGATGCTGCATCACA
CCAAACGGCAGCCTGCACTTGACCAGTGCACTTGACTGCTGTTACCATGA
CGGAGATATGGGGGCGTTCCTTTGTGGGGGTTTTCGCCATTGTTTGTTTG
TTAATCTTCAGCTGTATGGATATTTAGTGCTCACACCCGTTGCTGCAGAA
CGTCAAGTGGTACCAGGCGCAGATAGCGCTTTGTCTCCGAGCAAACGGCC
TGTGTAACGGTCGGAGGTGTCTCCTATCTGGATATCTATGTAGATAGTGC
ACAGGATACGCGAAGGGGGGAGGAGTTTTACCCCCATGTACCCCTATCGA
ACACGCCGGCTCACGTGGGCTTCAGAGAACCTTTGCATTCGCAAGCTTGA
GTGTGCAGGCTAACATGTCCAGTTGGAATTTAAAAAAAGTGTCCGCACTC
GTGAATAATGTGTAGCTTAAAGATACCATGGTTTACTAGAGTCTAGATAG
ATCCGAAGAGAAAAACAAAATGGCTGCACCTCTCAGACGCCGTCGTTGCT
GTATGTTGTTGCTGGATCGCTCCGCCCGCAGGTTCGTCGTGGCACCCATG
GCCAGCACCTTTTTGCGCTCCACACATGAGCAAGGCTTATTACCCTAGAT
ATGGGCAGTCGCCAATCCTCCCTGGTCCTTTCTTGCGTGAGATGTCCATC
TGTTTTACAATCGTCCAAAGCAGAAGGTTTCCTTCCCCTCTCCCCTTGAC
CAAACAAACCATCTCCGTGTTTTTTTTTTTATCTCTTGCAGGCGAAATGT
CACAGGGGACGGCATCGGCGGGCTCCCCGCCCCCGCCGAATCTTCATCCT
CGCCCGCCCGCGCCTTGATCGGCAGTTCTAGCCCCGCCGCATCCGGCGGC
GGCGACGGCCCAAGCTGTGGCGAGATCATGACAGAGGCGGGGGCAGGGGA
GGAGAGTATTTTCGCCGTGGAAGACGAGGAAGAGGAGGAAGAGGAAGAGG
AGGACGAAGGGGGGGAGCAGGTCGAGGTTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19934:1026..2207+

>mRNA_L-elsbetiae_contig19934.5976.1 ID=mRNA_L-elsbetiae_contig19934.5976.1|Name=mRNA_L-elsbetiae_contig19934.5976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig19934:1026..2207+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGCCGTAAGCCTTCAAATCCTACCAGATGCCTCGCCGTAAGCCT
TCAAATCCTACCAGGCGAAATGTCACAGGGGACGGCATCGGCGGGCTCCC
CGCCCCCGCCGAATCTTCATCCTCGCCCGCCCGCGCCTTGATCGGCAGTT
CTAGCCCCGCCGCATCCGGCGGCGGCGACGGCCCAAGCTGTGGCGAGATC
ATGACAGAGGCGGGGGCAGGGGAGGAGAGTATTTTCGCCGTGGAAGACGA
GGAAGAGGAGGAAGAGGAAGAGGAGGACGAAGGGGGGGAGCAGGTCGAGG
TTGCGGCGAAATGTCACAGGGGACGGCATCGGCGGGCTCCCCGCCCCCGC
CGAATCTTCATCCTCGCCCGCCCGCGCCTTGATCGGCAGTTCTAGCCCCG
CCGCATCCGGCGGCGGCGACGGCCCAAGCTGTGGCGAGATCATGACAGAG
GCGGGGGCAGGGGAGGAGAGTATTTTCGCCGTGGAAGACGAGGAAGAGGA
GGAAGAGGAAGAGGAGGACGAAGGGGGGGAGCAGGTCGAGGTTGCG
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