mRNA_L-elsbetiae_contig19926.5972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19926.5972.1
Unique NamemRNA_L-elsbetiae_contig19926.5972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19926.5972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19926contigL-elsbetiae_contig19926:390..945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000575.1
Exons1
Model size556
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.2515965-CDS-L-elsbetiae_contig19926:389..9441622815824.2515965-CDS-L-elsbetiae_contig19926:389..944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19926 390..944 +
1691683126.8219779-CDS-L-elsbetiae_contig19926:389..9441691683126.8219779-CDS-L-elsbetiae_contig19926:389..944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19926 390..944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19926.5972.1prot_L-elsbetiae_contig19926.5972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19926 390..944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19926.5972.1

>prot_L-elsbetiae_contig19926.5972.1 ID=prot_L-elsbetiae_contig19926.5972.1|Name=mRNA_L-elsbetiae_contig19926.5972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
QDSSGGESGEGGGRQRRPSPPSAAAGNNCDDPTCCSCSPNHMLSEMMSSM
MSSSMSPSTSGMCDVPPEAARMLSTMMASGGAQGFSPMQMMPGAPQSMFA
GFAAGLAGAGGGSGSGGGGGSGSGSGSGRQQWGQGPSSAGPEAGAASGAA
GGSADDDDDKCTEPPPLEPASSSDEGDDDDDDGRG
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mRNA from alignment at L-elsbetiae_contig19926:390..945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19926.5972.1 ID=mRNA_L-elsbetiae_contig19926.5972.1|Name=mRNA_L-elsbetiae_contig19926.5972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=556bp|location=Sequence derived from alignment at L-elsbetiae_contig19926:390..945+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGATTCAAGCGGAGGTGAGAGCGGGGAAGGCGGCGGTCGGCAACGCAG
GCCGTCCCCCCCCTCCGCCGCCGCCGGCAACAACTGCGACGACCCCACCT
GCTGCAGCTGCTCGCCCAACCACATGCTCTCCGAGATGATGTCGAGCATG
ATGAGCTCATCGATGAGCCCGTCCACCTCCGGAATGTGCGACGTGCCTCC
GGAGGCCGCGAGGATGCTGTCCACGATGATGGCCAGCGGCGGCGCCCAAG
GCTTCTCACCGATGCAAATGATGCCGGGAGCCCCGCAGTCCATGTTTGCT
GGGTTTGCCGCGGGATTGGCCGGGGCTGGGGGCGGCAGCGGCAGCGGCGG
TGGCGGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGGCAGCAGTGGGGAC
AAGGACCGTCTTCAGCGGGGCCGGAGGCGGGGGCAGCGTCAGGGGCTGCG
GGCGGCAGTGCCGACGATGACGACGACAAGTGCACTGAGCCCCCGCCGCT
GGAGCCGGCCAGCTCTTCCGACGAAGGGGACGATGATGATGATGATGGCC
GTGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19926:390..945+

>mRNA_L-elsbetiae_contig19926.5972.1 ID=mRNA_L-elsbetiae_contig19926.5972.1|Name=mRNA_L-elsbetiae_contig19926.5972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig19926:390..945+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGATTCAAGCGGAGGTGAGAGCGGGGAAGGCGGCGGTCGGCAACGCAG
GCCGTCCCCCCCCTCCGCCGCCGCCGGCAACAACTGCGACGACCCCACCT
GCTGCAGCTGCTCGCCCAACCACATGCTCTCCGAGATGATGTCGAGCATG
ATGAGCTCATCGATGAGCCCGTCCACCTCCGGAATGTGCGACGTGCCTCC
GGAGGCCGCGAGGATGCTGTCCACGATGATGGCCAGCGGCGGCGCCCAAG
GCTTCTCACCGATGCAAATGATGCCGGGAGCCCCGCAGTCCATGTTTGCT
GGGTTTGCCGCGGGATTGGCCGGGGCTGGGGGCGGCAGCGGCAGCGGCGG
TGGCGGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGGCAGCAGTGGGGAC
AAGGACCGTCTTCAGCGGGGCCGGAGGCGGGGGCAGCGTCAGGGGCTGCG
GGCGGCAGTGCCGACGATGACGACGACAAGTGCACTGAGCCCCCGCCGCT
GGAGCCGGCCAGCTCTTCCGACGAAGGGGACGATGATGATGATGATGGCC
GTGGCCAGGATTCAAGCGGAGGTGAGAGCGGGGAAGGCGGCGGTCGGCAA
CGCAGGCCGTCCCCCCCCTCCGCCGCCGCCGGCAACAACTGCGACGACCC
CACCTGCTGCAGCTGCTCGCCCAACCACATGCTCTCCGAGATGATGTCGA
GCATGATGAGCTCATCGATGAGCCCGTCCACCTCCGGAATGTGCGACGTG
CCTCCGGAGGCCGCGAGGATGCTGTCCACGATGATGGCCAGCGGCGGCGC
CCAAGGCTTCTCACCGATGCAAATGATGCCGGGAGCCCCGCAGTCCATGT
TTGCTGGGTTTGCCGCGGGATTGGCCGGGGCTGGGGGCGGCAGCGGCAGC
GGCGGTGGCGGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGGCAGCAGTG
GGGACAAGGACCGTCTTCAGCGGGGCCGGAGGCGGGGGCAGCGTCAGGGG
CTGCGGGCGGCAGTGCCGACGATGACGACGACAAGTGCACTGAGCCCCCG
CCGCTGGAGCCGGCCAGCTCTTCCGACGAAGGGGACGATGATGATGATGA
TGGCCGTGGC
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