mRNA_L-elsbetiae_contig19924.5971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19924.5971.1
Unique NamemRNA_L-elsbetiae_contig19924.5971.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19924.5971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19924contigL-elsbetiae_contig19924:39..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.199063-CDS-L-elsbetiae_contig19924:38..921622815824.199063-CDS-L-elsbetiae_contig19924:38..92Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19924 39..92 +
1691683126.7979956-CDS-L-elsbetiae_contig19924:38..921691683126.7979956-CDS-L-elsbetiae_contig19924:38..92Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19924 39..92 +
1622815824.2153037-CDS-L-elsbetiae_contig19924:1254..14071622815824.2153037-CDS-L-elsbetiae_contig19924:1254..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19924 1255..1407 +
1691683126.807468-CDS-L-elsbetiae_contig19924:1254..14071691683126.807468-CDS-L-elsbetiae_contig19924:1254..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19924 1255..1407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19924.5971.1prot_L-elsbetiae_contig19924.5971.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19924 39..1407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19924.5971.1

>prot_L-elsbetiae_contig19924.5971.1 ID=prot_L-elsbetiae_contig19924.5971.1|Name=mRNA_L-elsbetiae_contig19924.5971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
KDGRKRRGAGLGNRGSCKANYRRKQEKARSYGSSSETILAIRCCLRHRAY
RRARALRSAASRCWGDTI*
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mRNA from alignment at L-elsbetiae_contig19924:39..1407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19924.5971.1 ID=mRNA_L-elsbetiae_contig19924.5971.1|Name=mRNA_L-elsbetiae_contig19924.5971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1369bp|location=Sequence derived from alignment at L-elsbetiae_contig19924:39..1407+ (Laminarionema elsbetiae ELsaHSoW15)
AAAGATGGAAGAAAGCGCCGTGGCGCCGGCCTTGGGAACCGCGGAAGCTG
TAAGGTACGTTGCAAAATGTGAAAAGCCTTTTGACACGGTAGTCGCACAA
ATCTGTTGAATTGTATCATTGGTGCATTGATTGCTGTTTGTCACATTAGC
TCTCTAGTCCAAAGCATCCATGGGGGCCCGTGGTCACAAAGACAGGGCAA
ACTCAACGCTGCAAAATAAATCAATCAGTCAAAAGTATGGACATCGCCCC
GGTGGTCTAGTGGTTTACTTTGCAGGTGAAATCGATAAAAAAAGATGAAA
AGCTCGTGAGTACCAAACTTCGACGTAAACACGTTGACGAGGGAAAGGGA
TAGCTGAACCCTTCTCGCGATAAAAGGCAAGAACCGCAGGAGGAAAAGGT
GGGGCAAAAAAAGAAAATAGAAAAGAAGAAAAAGCCCCAGTGTTCACCTC
CTCCTGTGTGACCCCGGTTGGTTCTAGTTGTGCAGAAAATTGCGCTGCAA
ATAGTAGTACCTCTAAGTACACCGCAAGGTGTAGTACACGTCTTCACTTG
GGGGAAATGTCGCCAAAATAAATGGGAAGGATACACACACACACACATGG
TACATACGCGTCCGGTGATACTAAACTGAGCCCCAAAGGGGTCTTGCGTC
TCGTGCACACTAAATGCCAGAAGCTACATATCTAGGGTACATACCACGCA
GAAGATAAAAAAAAGAAAGACAGAAAAACAGAAGCTGTATCACGCCATGT
AGGGGAAGAGAGCTACGGAGAGCCGAACGAAGTGCATTGTCACACACTGC
GCTGTTTATTGGCCGGCTGCGTTCCACAGCAAGCATATACTACCCCGATG
AATATTGGTGGAGAGATTTTCGGTTCTTCTTCTGTAGCCTGAGAGCAATA
GGTCTGCACCGTTGGACATGATGTTGCCGGTGGGGCGTGCTCCTGATCGT
GGCGTCGCTTGGAGGCCCAAAGAAACAGTACAGGTTCTGCCCAGGAAAAG
CAGCTGTATCGGTGTCTATATATTCAATTCCATCTGATTGCACGTCGTGA
CTTTTACGCTACGACCACGGCTTGCCCACGCGGTCCTGCTCTCGGAGAAA
ACTGACCGTCGATTCTCCATCTCCATCCAAGAATGTATGTTCCTCCTTCA
TCTACAGCAATGCCCCCCGCTTACCCTTGGAAGGCTTGCTTCGTGTCGTG
ATTTGCGGCCATCCAGGCGAACTACAGGCGGAAACAAGAGAAGGCGCGGT
CGTACGGGAGCAGCAGCGAAACGATTCTAGCAATTCGTTGTTGCTTGAGG
CATAGGGCGTATCGCAGAGCGCGGGCATTGCGGAGTGCAGCATCGCGATG
TTGGGGTGATACCATATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19924:39..1407+

>mRNA_L-elsbetiae_contig19924.5971.1 ID=mRNA_L-elsbetiae_contig19924.5971.1|Name=mRNA_L-elsbetiae_contig19924.5971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig19924:39..1407+ (Laminarionema elsbetiae ELsaHSoW15)
AAAGATGGAAGAAAGCGCCGTGGCGCCGGCCTTGGGAACCGCGGAAGCTG
TAAGAAAGATGGAAGAAAGCGCCGTGGCGCCGGCCTTGGGAACCGCGGAA
GCTGTAAGGCGAACTACAGGCGGAAACAAGAGAAGGCGCGGTCGTACGGG
AGCAGCAGCGAAACGATTCTAGCAATTCGTTGTTGCTTGAGGCATAGGGC
GTATCGCAGAGCGCGGGCATTGCGGAGTGCAGCATCGCGATGTTGGGGTG
ATACCATATAGGCGAACTACAGGCGGAAACAAGAGAAGGCGCGGTCGTAC
GGGAGCAGCAGCGAAACGATTCTAGCAATTCGTTGTTGCTTGAGGCATAG
GGCGTATCGCAGAGCGCGGGCATTGCGGAGTGCAGCATCGCGATGTTGGG
GTGATACCATATAG
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