prot_L-elsbetiae_contig19859.5941.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig19859.5941.1
Unique Nameprot_L-elsbetiae_contig19859.5941.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length76
Homology
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BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A8J5FX94_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FX94_ZINOF)

HSP 1 Score: 50.1 bits (118), Expect = 3.060e-5
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0 
Query:    2 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 66
            C   K  R   PK   RA SP   +H+D+CG +   S+    Y +  VD+F+R++ TY L RKSDA
Sbjct:  486 CIYRKMHRFPFPKTAWRARSPLELVHVDICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 551
[Close]
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A4Y2K047_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2K047_ARAVE)

HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:    1 PCARVKGRRASVPKKGG-RATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKS 64
            PC   K +R S    G  R+T+P   LHLD+CG L   SI G  Y L+++D++SR + T+ ++RK+
Sbjct:  105 PCRLAKSKRHSFKPIGKIRSTNPLELLHLDVCGPLPSNSIQGHRYFLSIIDDYSRKVTTFPMKRKT 170
[Close]
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A8J5I781_ZINOF (Integrase catalytic domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I781_ZINOF)

HSP 1 Score: 49.3 bits (116), Expect = 5.740e-5
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0 
Query:    2 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 66
            C   K  R   PK   RA SP   +H D+CG +   S+    Y +  VD+F+R++ TY L RKSDA
Sbjct:  513 CIYGKMHRFPFPKTAWRARSPLELVHADICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 578
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J5FX94_ZINOF3.060e-540.91Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A4Y2K047_ARAVE3.680e-540.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5I781_ZINOF5.740e-540.91Integrase catalytic domain-containing protein n=3 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 14..74
e-value: 3.2E-6
score: 28.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 18..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19859contigL-elsbetiae_contig19859:2411..2638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19859.5941.1mRNA_L-elsbetiae_contig19859.5941.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig19859 2411..2638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig19859.5941.1 ID=prot_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
PCARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYPSIAGSIYLLAVVDN
FSRLLLTYGLRRKSDATEGVQLALTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf